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* docs: turn README into an index and move reference detail to docs/guide The README had grown to 393 KB because every change appended its notes there. The text moves verbatim into 18 topic guides under docs/guide/; only headings are re-leveled and relative links re-pointed. The README keeps the introduction, a quick start and a guide index. Contributor test notes move to CONTRIBUTING.md. * docs: send user docs to topic guides and budget the root README The rule 'update README.md for user-facing changes' is what grew the README. Guidance now points to docs/guide/, and check_agent_guidance.py fails when the root README exceeds 16 KiB (AG003). * chore: remove unreferenced screenshots and finished plan notes pr-build/ holds two PR screenshots (3 MB) from #1986. plans/ holds the plan for the merged #4049. docs/SKILL_NAME_CONFLICT_FIX.md is a February change note. Nothing references them. * docs: route always-loaded AGENTS.md files to scoped guides * docs(agents): cut scoped guides to scope, verify, traps, decisions Each AGENTS.md keeps four kinds of content: the scope of the directory, the verification commands, traps a local test run does not show, and decisions the code cannot state. Values, field lists, function inventories, test names, issue numbers and history are deleted, because the code, the tests and git state them. Search and fetch providers share one community guide. Four guides with no remaining content are removed. The size check now allows 6 KiB per file (hard limit 8 KiB) and 24 KiB per chain (hard limit 32 KiB). * style: format frontend guide table and guidance test imports --------- Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
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Orchestration scripts (scripts/)
Scripts behind the root Makefile: local start and stop (serve.sh), Docker
development (docker.sh), production deployment (deploy.sh), setup and
diagnosis (setup_wizard.py, doctor.py, support_bundle.py), static analysis
and repository checks. Each script documents its own flags; run it with --help
or read its header.
Verify
cd backend
python -m pytest tests -q -k "serve or deploy or compose or doctor or dotenv or script or wizard or support_bundle"
The shell suites run the real scripts against stub docker and uv binaries.
Cases marked for real Compose run only when a docker CLI is installed.
Portability
- Make recipes call
.shfiles throughRUN_SHELL_SCRIPT, and a script that calls a sibling script prefixes it withbash. A source archive,core.fileMode=falseor a non-POSIX filesystem does not keep executable bits. - Host pnpm calls go through
scripts/pnpm.py. It chooses the launcher by Python'sos.name, not by the invoking shell, so native Windows, MSYS and POSIX each get the right one. - Shell filters stay compatible with GNU and BSD sed, because macOS ships
the BSD tools.
sandbox-mode.shuses Bash and awk only. - Lookups that run before the environment exists use the standard library
only. Config detection, label checks and the dotenv helpers run before
uv sync. - Python entry points guard their stream encoding. Windows consoles and
redirected CI logs are not UTF-8 by default, and embedded or captured streams
have no
reconfigure. Read config and credential JSON with or without a BOM, as the runtime loader does.
Config and dotenv
- Act on the file the Gateway would load.
doctor.pyandconfig-upgrade.shask the harness for the resolved config path. A fixedconfig.yamlpath diagnoses or upgrades the wrong file when an override is set. - Never source a dotenv file. Parse it and quote path arguments. A dotenv value overrides nothing that the shell exported, including an exported empty value.
deploy.shlets Compose parse.env. Compose accepts forms that aKEY=VALUEgrep misses, so the script asksdocker compose configwhat a key resolves to. Do not export a value the script read from.env: that shadows Compose's own parsing, andmake upthen replaces the operator's secret with a generated one.- Secrets resolve shell, then
.env, then the persisted file, then a new value. A failing probe stops the script; it does not guess. - One dotenv selection per deployment.
DEER_FLOW_COMPOSE_ENV_FILEis resolved once, and Compose interpolation, service env files, secret probes and extras detection all use that path. - Do not seed production
.envfrom the examples..env.exampleholds placeholder API keys that the production Gateway would receive. Both compose files mark the env files optional so a fresh checkout still starts and stops. - Support bundles export no secrets and show an external runtime home as
{DEER_FLOW_HOME}.
Start, stop, clean
- Validate before you stop anything.
serve.shresolves the bind host and config first, so a bad value cannot tear down a running stack. downskips secret and permission checks. Permission damage in the runtime home must not prevent teardown.make cleandeletes the runtime home, which the compose stacks mount. It refuses while the Gateway container runs, and it stops sandbox containers before the delete because their thread mounts live in that tree.- Match container names exactly. Docker's
name=filter is a substring match.cleanup-containers.shverifies the anchored prefix afterwards, so it cannot remove another project's container. - Runtime commands use
uv run --no-sync, which keeps installed extras such as database drivers. - Browser sessions need a single Gateway worker process. They are
process-local, so launchers keep
WEB_CONCURRENCYunset or1. - The multi-instance dev harness keeps IM channels disabled unless asked. Credentials saved through the UI could otherwise connect a real bot later.
Checks and analysis
- Skill review waivers take effect from the base revision only. The head manifest is validated but cannot authorize a finding in its own pull request. Blockers are never waivable.
detect-blocking-iois a static approximation. It resolves calls by name inside one file and over-reports on purpose. The strict gate is the runtime suitemake test-blocking-io;scan_changed_blocking_io.pylimits the static findings to a diff.detect-thread-boundaries --runtime-configimports configured tools and models. It does not call models or external services.