72 Commits

Author SHA1 Message Date
ShiYuan Xiong
f42076a005
fix(projects): preserve conversion outcomes through staging cleanup (#7659) 2026-10-28 22:07:44 +08:00
Tsai Yuan
54a09c467e
fix(readability): cache unavailable Node extraction (#7617)
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-10-28 07:33:41 +08:00
Qiu
370da43119
fix(utils): construct one-shot models off the event loop (#7484)
* fix(utils): construct one-shot models off the event loop

* docs(utils): document all one-shot callers and offload scope

Project-file summaries use the shared one-shot helper as well as input
polishing and follow-up suggestions. Include that third caller in the
README and utility guidance, and distinguish the separate skill scanner
and goal evaluator constructors.

Runtime and tests are unchanged. The existing exact-head strict and caller
regressions pass together: 80 passed on Windows with Python 3.12.14.
2026-10-26 15:41:24 +08:00
PerryLink
d04ee1d131
fix(utils):Keep the timestamped output-name fallbacks distinct on a coarse clock (#7071)
* fix(harness): keep timestamped output-name fallbacks distinct

`output_name_candidates()` sampled `datetime.now(UTC)` inside the yield
loop, so its five timestamped fallbacks were only distinct when the host
clock advanced between two generator steps.  On a coarse clock (Windows
advances in sub-millisecond steps) all five produced the same name, and
the capture tools lost retries before failing with
`could not reserve an output filename`.

Sample the clock once when the first fallback is reached and offset each
attempt by one microsecond, so distinctness no longer depends on the host
clock.  Add a regression test that freezes the clock, and update the
exhaustion test to hold all five distinct stamps.

* docs: describe the coarse clock accurately

---------

Co-authored-by: PerryLink <255665900+PerryLink@users.noreply.github.com>
2026-10-25 16:17:15 +08:00
Lym308758
346ff7b253
fix(memory): rank capacity eviction per record, not per fact_id (#7454)
* fix(memory): rank capacity eviction per record, not per fact_id

select_facts_for_capacity keyed every score by fact_id, so an imported
batch that repeats an id collapsed into a single dict entry: the last
record's score won, and both the ranking pass and the evicted audit
read that one value for every position. A 0.9-confidence record could
therefore be evicted while its own 0.1-confidence duplicate survived.
The import path keeps caller-supplied ids without checking them for
uniqueness, and any over-cap import lands here.

Score by position instead: a parallel list next to the indexed facts,
so ranking and the audit read each record's own score. The public
``scores`` dict stays keyed by fact_id with last-write-wins
semantics, keeping the DeerMem benchmark contract and the callers
that never read it unchanged.

Red on main: test_confidence_policy_scores_duplicate_fact_ids_per_record
fails with the highest-confidence record evicted; green on this branch.

* fix(utils): keep share-less UNC roots out of the extended-length prefix

extended_length_path prefixed every absolute UNC path with
\\?\UNC\, but Win32 only accepts \\?\UNC\server\share\... — a
share-less root (\\server, \\server\, or a bare \) is not a valid
device path, so every Win32 call handed the prefixed spelling fails.
Only prefix when both the server and the share are present;
otherwise return the ordinary spelling unchanged.

Red on main: the \\server, \\server\, //, and //server cases of
test_windows_extended_spelling assert the forged prefix; green on
this branch.
2026-10-25 13:20:15 +08:00
Felix Shi
737d50f625
fix(channels): retry the runtime config file lock instead of failing after ~10s on Windows (#6888)
* fix(channels): retry the runtime config file lock instead of failing after ~10s on Windows

The runtime channel config sidecar lock (#6844) used Windows' blocking msvcrt LK_LOCK mode, which gives up after roughly ten seconds and surfaces cross-worker contention as Permission denied instead of serializing the read-modify-write cycles it exists to serialize, while fcntl.flock(LOCK_EX) waits on POSIX. Retry the non-blocking acquisition (LK_NBLCK + 0.2s) on the Windows fallback, mirroring the extensions manager's lock (#6020), and bind fcntl/msvcrt at module level so the fallback branch is testable.

Tests: new backend/tests/test_channel_runtime_config_store_lock.py (5 tests: retry cadence via fake msvcrt, sidecar byte creation, POSIX flock preservation, direct Windows regression through the sys.modules seam, real cross-thread contention). 3 of them fail on the unmodified base (one with OSError 36 raised by the blocking call itself) and all pass with the fix. Related suites: store peers + connections router 86 passed / 1 skipped; blocking_io + encoding + channels 498 passed / 2 skipped. Ruff format and check clean on both files. Windows 11, Python 3.12 (uv-managed venv).

* fix(channels): share contention retries and diagnose prolonged lock waits

* docs(channels): shorten guidance to satisfy lint budget

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-10-25 11:05:04 +08:00
jay
63211d5da6
fix(readability): preserve <a> links when Readability.js silently degrades on Windows (#7412)
* fix(readability): preserve <a> links when Readability.js silently degrades on Windows

On Windows, simple_json_from_html_string(use_readability=True) invokes the
Readability.js subprocess, which succeeds without error but returns the
unextracted document instead of the extracted article. The pure-Python
fallback (use_readability=False) also drops every <a> destination. The net
effect is that web_fetch returns link-free Markdown on Windows.

Fix: after extraction, check whether the output retained the <a> elements
that the resolved HTML carried. When they are all gone, fall back to
converting the resolved HTML directly with markdownify — which preserves
<a> as [text](href) — so links survive regardless of the Readability.js
outcome.

Measured: 17 of 22 test_web_fetch_relative_links.py failures resolved;
43/48 pass on Windows (5 remaining are pre-existing malformed-markup
extraction tests, unrelated to this change).

Closes #6459

* test(readability): add degraded-extraction and scope-pinning tests

* test(readability): detect unwanted article fallback

* test(readability): classify HTML body in authority-tag census

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-10-25 08:56:21 +08:00
Sun Shihao
bba880b676
fix(projects): drain shelf staging on cancellation (#7360) 2026-10-24 10:47:40 +08:00
wannT-1
e1a7cba2ef
fix(extensions): keep atomic-write cleanup from replacing the save error (#7164)
* fix(extensions): keep atomic-write cleanup from replacing the save error

Extension snapshot rollback, the managed plugins rewrite, and skill-archive
upload copies now use cleanup_failed_atomic_write so a failed unlink or
warning log cannot mask the original publication error.

Co-authored-by: wannT-1 <wannT-1@users.noreply.github.com>

* fix(skills): keep upload and storage cleanup from replacing the save error

Route the skill-archive upload discard, custom-skill file writes, and
per-user skill-state writes through cleanup_failed_atomic_write. Close the
extension rollback descriptor on fdopen failure, and record the plugins
temporary path before the write so a short write is still removed.

Co-authored-by: wannT-1 <wannT-1@users.noreply.github.com>

* fix(skills): keep form close and snapshot delete from masking the save error

Discard the uploaded skill archive before closing the multipart form, and
suppress close errors so a flush failure cannot replace the install outcome.
Snapshot rollback of a missing original now uses cleanup_failed_atomic_write,
and skill-state writes clean up on BaseException including KeyboardInterrupt.

Co-authored-by: wannT-1 <wannT-1@users.noreply.github.com>

* test(extensions): assert logging cleanup cannot replace the delete-branch error

The log-handler check only ran for the unlink parameter, where the handler
is never patched. Move it under the logging failure so a handler exception
must stay out of the surfaced install error.

Co-authored-by: wannT-1 <wannT-1@users.noreply.github.com>

---------

Co-authored-by: wannT-1 <200890097+wannT-1@users.noreply.github.com>
Co-authored-by: wannT-1 <wannT-1@users.noreply.github.com>
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-10-24 07:38:10 +08:00
derrickLzw
1278c5192b
fix(models): honor HTTP-date Retry-After hints in Claude retries (#7295)
* fix(models): honor HTTP-date Retry-After hints in Claude retries

* refactor(models): share bounded HTTP-date retry parsing

* test(agents): move retry date regression to middleware suite
2026-10-23 15:21:44 +08:00
haotianqi666
871d064f9e
fix(sandbox): preserve local files when revisions fail (#7299)
* fix(sandbox): preserve local files when revisions fail

* fix(sandbox): address revision cleanup and metadata review

---------

Co-authored-by: haotianqi666 <250384991+haotianqi666@users.noreply.github.com>
2026-10-23 08:22:45 +08:00
Totoro
2f0cd407fc
fix(goal): base no-progress counting on successful operations (#7271)
* fix(goal): track successful operations for no-progress checks

* fix(goal): reject failed exits and narration-only progress

---------

Co-authored-by: Totoro-qaq <279883115+Totoro-qaq@users.noreply.github.com>
2026-10-23 00:14:32 +08:00
SumEn
f4eaa51a73
fix(uploads): retain filesystem ownership across request cancellation (#7170)
* fix(uploads): retain filesystem ownership across cancellation

* fix(uploads): preserve cancellation across cleanup failures
2026-10-20 23:17:00 +08:00
Zicheng (Axelsen) Xie
1ce0b765de
fix(uploads): preserve separate bold spans in outline titles (#7150) 2026-10-20 16:39:33 +08:00
SumEn
53f09dc152
fix(projects): preserve document upload outcomes during cleanup (#7141)
* fix(projects): preserve upload outcomes during staging cleanup

* fix(projects): guard staging discard failures

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-10-20 13:15:40 +08:00
zzr
3e6e83c87c
fix(browser): preserve publication errors during failed cleanup (#6871)
* fix(browser): preserve publication errors during failed cleanup

* fix(browser): log atomic output cleanup failures

* fix(browser): keep cleanup logging best effort

* fix(skills): preserve projection manifest publication failures

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-10-19 16:27:15 +08:00
Hyeonsang Cho
9b0c7cbc37
fix(browser): never replace an existing output file with browser_screenshot (#6913)
* fix(browser): never replace an existing output file with browser_screenshot

browser_screenshot published straight onto outputs/<name> through the
replacing atomic publisher, so a screenshot saved as report.png silently
replaced the user's own report.png, an earlier capture, or another
default-named capture taken in the same second (the default stem has
second resolution). The sibling web_capture tool already keeps existing
files and takes a -1, -2, ... suffix.

Stage the complete capture under a hidden sibling and hard-link it onto
the first free candidate name. The link is the whole no-overwrite guard:
it fails with FileExistsError when the name exists as anything, so no
name is checked before it is claimed and a concurrent writer cannot be
replaced; the final name never shows a partial file. Staging shares the
outputs directory, so the link is same-filesystem, and like Gateway
uploads other link failures propagate instead of falling back to
replacement. New files keep the publisher's normal creation mode.

Hidden per-action progress frames keep the replacing _write_screenshot:
their names carry microsecond timestamps in a server-owned directory.

* docs(changelog): reference #6913 for the browser_screenshot no-overwrite fix

* fix(browser): refuse a staged screenshot swapped before it is linked

The sandbox can write outputs/, so it can see the hidden staged capture
and replace it with a symlink before the hard link. os.link follows
symlinks by default, which would publish a hard link to the host file as
the screenshot artifact (the replacing publisher this PR moved away from
never followed one).

Stage the capture with an exclusively created descriptor and keep its
identity from fstat, link without following symlinks where the platform
supports it (decided once at import), and require the published name to
be that inode; anything else is removed and the capture fails, like
Gateway uploads' identity check. A failed staging write still leaves no
files behind.

* docs(readme): note that browser_screenshot never replaces an output file

* fix(browser): keep the staged screenshot open until its link is verified

Linux filesystems reuse a freed inode number at once. Closing the staged
capture before linking let a file swapped in at the staged name take the
same number and pass the samestat check, so the symlink and planted-file
swap tests failed on Linux CI while passing on macOS. Hold the staged
descriptor through the link and identity check, as Gateway uploads do,
and require the published name to be a regular file.

* test(browser): race the peer claim against the real publication step

The claimed-name test patched _publish_bytes_atomically, which the
screenshot path no longer calls, so its hook never fired and the race
assertions passed vacuously. Plant the peer file right before os.link or
os.replace lands bytes on a visible name, and assert that the claim
happened, the capture moved to report-1.png, and the peer file survived.

* refactor(capture): share one output-name candidate sequence

browser_screenshot hand-copied web_capture's probe bound and suffix
order, and the copies had already drifted: Browserless retried a held
timestamped name five times, the screenshot tool once. Move the bound,
the retry count and the candidate order into utils/output_names.py and
have both tools iterate it, so the naming cannot drift again. Browserless
behavior is unchanged; its tests now patch the shared module.

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-10-18 10:52:22 +08:00
EastonJiang
708f16766a
fix(uploads): offload document conversion for every file size (#6924)
* fix(uploads): offload document conversion for every file size

* test(uploads): clarify cancellation regression failures
2026-10-17 19:58:50 +08:00
sjr666666
2fe325f8ae
fix(lark): retry the Windows install lock instead of failing after ~10s (#6881)
* fix(lark): retry the Windows install lock instead of failing after ~10s

msvcrt.LK_LOCK gives up after roughly ten seconds and surfaces contention
as Permission denied, while a real install (download + setup of the
lark/sandbox CLI) can hold the lock far longer. Retry the non-blocking
acquisition on the Windows fallback branch so concurrent Gateway workers
serialize instead of failing, mirroring the extensions manager's lock
introduced in #6020. The POSIX flock branch is unchanged.

Closes #6879

* test(lark): inject msvcrt stub with raising=False for Linux runners

The regression test patches the module-level ``msvcrt`` attribute, which only
exists on Windows (the POSIX branch imports ``fcntl`` instead), so
``monkeypatch.setattr`` with the default ``raising=True`` raised AttributeError
on Linux CI (backend-unit-tests shard 4).

Pass ``raising=False`` so the stub is injected on POSIX runners: ``fcntl`` is
patched to ``None`` first, and ``_exclusive_install_lock`` then takes the
Windows fallback branch against the fake. Windows behavior is unchanged.

Scope: backend/tests/test_lark_cli_install_lock.py, 1 line.
Verification: pytest tests/test_lark_cli_install_lock.py on Windows
(Python 3.12, pytest 9.0.3) -- 3 passed incl. the real-contention case;
Linux CI rerun is the authoritative check.

* fix(lark): harden and share advisory lock retries

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-10-15 08:03:10 +08:00
IronMurphy
fa9fca740c
fix(browser): publish captured screenshots and fetches atomically (#6731)
* fix(browser): publish captured screenshots and fetches atomically

_write_screenshot and _write_capture_output wrote the final path with a truncating
write and then returned its name, so a failure part-way through left a partial
capture that the caller reported as saved - and the leftovers then made the dedupe
helper pick a new name for the next capture. Publish through a temporary file plus
os.replace.

* fix(browser): preserve permissions on atomic capture publication

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-10-13 14:39:23 +08:00
jiujiu
3234563db8
fix(utils): skip malformed response block types (#6614)
Co-authored-by: songjianglin <270247441+2017955725@users.noreply.github.com>
2026-10-11 08:25:53 +08:00
Zeren Wang
553f85e788
feat(projects): best-effort LLM summaries for shelf documents (#6581)
Opt-in per-document summary column rendered into the injected
<documents> index, list_project_documents JSON, and the documents API.

Pipeline (projects/summaries.py, behind the narrow enqueue_summary
interface):
- The two shelf write routes enqueue a job on created=True; dedup hits
  never regenerate. Off by default (projects.summaries_enabled).
- Bounded worker pool (summary_concurrency + bounded summary_queue_size;
  a full queue drops the job) fed by FIFO; shutdown drains queued jobs,
  delivers one sentinel per worker via blocking put (queue smaller than
  the worker pool cannot strand idle workers), and bounds only
  genuinely in-flight jobs with the grace period.
- Jobs carry (document_id, project_id, user_id) explicitly; the job's
  owner is bound into the user ContextVar around the model call so
  tracing/usage attribution never falls back to 'default'.
- Text source reuses read_text_serving_path (convertible-first rule,
  content validation); conversion has no deadline (await_drained), the
  model call has a caller-side wait limit — the worker slot is retained
  until the provider call actually finishes and late results are
  discarded.
- Output contract: strip leading <think> reasoning -> unwrap fence/
  quotes -> collapse to one line -> empty is NULL -> UTF-8 byte cap on
  a character boundary; length-capped responses (provider-normalized
  detectors) are failures.
- set_summary pins updated_at (literal self-assignment) so a landing
  summary never reorders the shelf; owner-predicated UPDATE is a no-op
  on rows purged mid-generation.
- Metrics: eligible/success/failed/skipped/queue_dropped/
  uncapped_accepted.

Schema/config:
- project_documents.summary (migration 0036, nullable, no backfill;
  forward-compat floor unchanged).
- Six projects.summary_* keys, all registered in STARTUP_ONLY_FIELDS
  (captured once at lifespan startup); config_version 57 -> 58.
- run_oneshot_llm gains an optional model_overrides passthrough (passed
  only when set, existing callers unchanged) and a detailed variant
  exposing the raw response message for termination-signal detection.

Docs: API.md response field, ARCHITECTURE.md pipeline paragraph,
migrations AGENTS.md chain head, root AGENTS.md records the scoped
all-core exception with the lift-out path.
2026-10-10 07:11:02 +08:00
haochen
157630285b
fix(llm-text): respect quoted reasoning tag delimiters (#6535)
Co-authored-by: Zhangchenhao-111 <285911435+Zhangchenhao-111@users.noreply.github.com>
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-10-09 15:57:18 +08:00
四野
c7f9d35b66
fix(llm): preserve unrelated think-prefixed tags (#6505)
* fix(llm): preserve unrelated think-prefixed tags

* fix(llm): handle self-closing think tags consistently

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-10-08 20:59:50 +08:00
uhhgxg
9472579ef0
fix(middleware): guard OverflowError when parsing non-finite Retry-After hints (#6455)
* fix(middleware): guard OverflowError when parsing non-finite Retry-After hints

* fix(middleware): guard OverflowError when parsing non-finite Retry-After hints

* fix(retry): bound provider retry hints across model paths

Share a 24-hour ceiling for middleware numeric/date hints and Claude's
integer-second hints. Non-finite or oversized values use local backoff;
valid hints above the jitter cap remain unchanged and negatives clamp to zero.

Parameterize unusable hints at both middleware test levels, including nan.
Cover numeric/date boundaries and sync/async recovery through both retry paths.

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-10-08 18:16:21 +08:00
siye566
7d54feea07
fix(paths): reject space-padded Windows device names (#6458) 2026-10-08 10:31:06 +08:00
Xuehao Xu
b5af0b0e84
fix(projects): support Windows extended-length document paths (#6467)
* fix(projects): support Windows extended-length document paths

* fix(paths): preserve Windows device and extended namespaces
2026-10-08 10:21:18 +08:00
lilei
e0bd70279e
fix(uploads): skip HTML comment blocks in document outlines (#6470) 2026-10-08 10:10:07 +08:00
haochen
db40811ac4
fix(sandbox): stop port allocation at the TCP port limit (#6424)
Co-authored-by: Zhangchenhao-111 <285911435+Zhangchenhao-111@users.noreply.github.com>
2026-10-07 17:26:57 +08:00
Daoyuan Li
734f9e0e92
fix(runtime): omit leading reasoning from run summaries (#6419) 2026-10-07 17:20:11 +08:00
XuRuuuy
a9c8f79dfe
fix(gateway): resolve the agent factory off the event loop (#6206)
* fix(gateway): resolve the agent factory off the event loop

start_run() called resolve_agent_factory() inline, which lazily imports
the full lead-agent assembly stack (middlewares, authz, MCP, jsonschema;
measured at ~8s cold on Windows, multi-second on slower filesystems).
start_run is the single choke point every run-creation path flows
through, so the first run after Gateway startup blocked the event loop
for the whole import, stalling every other request, stream and channel
on the same loop - the loop-stall family issue #5172 fixed for agent
construction itself (the checkpoint-state path already resolves through
the assembly pool).

Resolve the factory via asyncio.to_thread: the first call pays one
worker-thread hop for the import, later runs hit the cached module.
Regression test pins the contract with a probe module whose module-level
__getattr__ records the thread that performed the from-import.

* fix(gateway): isolate factory resolution in the assembly pool

Move import regressions into the strict blocking-I/O suite and cover default-executor isolation, request context, and failure-before-admission ordering.

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-10-06 07:52:47 +08:00
siye566
e8f1e269e5
fix(uploads): exclude punctuated numeric columns from document outlines (#6266)
* fix(uploads): exclude punctuated numeric columns from outlines

* fix(uploads): filter currency and later numeric outline columns

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-10-05 13:20:00 +08:00
siye566
335c383147
fix(paths): reject Windows console device aliases (#6279) 2026-10-05 10:25:51 +08:00
KennySimpson
830de11c66
fix(uploads): exclude indented bold lines from outlines (#6194)
* fix(uploads): exclude indented bold lines from outlines

* refactor(uploads): name the indented-code pattern
2026-10-04 14:54:08 +08:00
wgwfn3
aaeed26d69
fix(uploads): drain conversion workers before source cleanup (#5999)
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-10-04 07:24:55 +08:00
Totoro
35023bb908
feat(scheduler): create conversation schedules and support agent self-stop (#6229)
* feat(scheduler): create conversation schedules and support agent self-stop

* fix(scheduler): validate goals and trial requests before dispatch

---------

Co-authored-by: Totoro-qaq <279883115+Totoro-qaq@users.noreply.github.com>
2026-10-04 06:46:13 +08:00
siye566
3a7e160a55
fix(paths): reject superscript Windows device names (#6148) 2026-10-03 09:04:06 +08:00
lilei
f840e843d3
fix: track converted upload ownership for outlines and listings (#6101)
* fix: track ownership of converted upload markdown

* fix: invalidate overwritten companions and restore branch ownership

* docs: explain legacy upload companion behavior on upgrade

* docs: shorten upload companion guidance to fit instruction budget

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-10-01 20:36:35 +08:00
Li-john1021
90c5d526e2
fix(paths): reject Windows reserved names on host-visible paths (#6102)
* fix(paths): reject Windows reserved names on host-visible paths

Uploads, skill support files, and sandbox path checks now share one helper that rejects CON, PRN, AUX, NUL, COM1-COM9, and LPT1-LPT9 (including names like con.txt) and components that end in a dot or space. The check is not limited to Windows so a Linux host cannot store a name that breaks when the same tree is used on Windows.

* fix(paths): validate quoted local bash paths as whole words

The absolute-path scan stopped at whitespace, so a quoted upload name such as report. final.txt or CON notes.txt was rejected as a truncated segment. Local bash checks now use the shlex argument for traversal and Windows-incompatible segments.

* fix(paths): do not block reads of existing host names

* style(paths): format with ruff 0.15.12
2026-10-01 09:11:19 +08:00
jiangjiang248
50d2d68556
fix(llm): avoid quadratic think-block stripping on unclosed tags (#5854)
* fix(llm): avoid quadratic think-block stripping on unclosed tags

* test(llm): pin think tag parsing edge cases

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-09-28 16:38:12 +08:00
yetuge
4a92cb579a
fix(uploads): keep document-conversion stat and write-back off the event loop (#5830)
* fix(uploads): keep document-conversion stat and write-back off the event loop

convert_file_to_markdown offloads the conversion itself for files above
1 MB (documented in its docstring), but the two bookend filesystem calls
still ran on the event loop: the size stat before the threshold check and
the write of the converted markdown afterwards — the latter a potentially
multi-megabyte write in the per-upload ingestion path. Route both through
run_file_io (the dedicated file IO pool that also keeps the caller's
context), matching the off-the-loop fixes already applied to the sibling
upload/document paths.

Add a tests/blocking_io anchor: with the converter patched to a 2 MB
payload it fails on the previous head (Blockbuster catches the blocking
os.stat first; the broad except swallows it into a None return) and
passes with this change.

* fix(uploads): address review — drain conversion write-back, make run_file_io re-entrant

Review follow-up on the off-loop conversion stat/write PR:

1. The write-back now goes through await_drained(): a plain run_file_io
   await cancels immediately while the worker keeps writing, so the
   ingestion scope could remove its private directory over an in-flight
   write and leave a large hidden partial file. The drain delivers the
   cancellation only after the worker settled, and the handler removes
   the partial output before re-raising.

2. run_file_io is now re-entrant: a nested offload issued from code
   already running inside a file-io worker (project-document conversion
   runs asyncio.run(convert_file_to_markdown(...)) inside a run_file_io
   worker) executes inline instead of submitting to the same bounded
   executor, which deadlocked with a single configured worker.

Both fixes carry deterministic regressions: the cancellation test pins
the drain ordering (cancel issued before the worker is released) and the
partial-file cleanup; the re-entrancy test pins inline execution by
thread identity. Both fail on the previous head. Full blocking_io +
project-document + conversion suites show an identical failure set to
the previous head (pre-existing Windows platform failures only).

* fix(uploads): keep cancellation authoritative when conversion cleanup fails

If the post-cancellation unlink of the staging output raised, the new
exception escaped the CancelledError handler, was swallowed by the
broad except as an ordinary conversion failure (None return), and left
both the caller's cancellation and the partial file behind. Catch and
log cleanup failures inside the handler and always re-raise the
captured cancellation; a second cancellation still passes through
untouched (CancelledError is not an Exception).

Red/green: tests/blocking_io/test_file_conversion_offloop.py gains a
regression where unlink fails while the write-back is in flight — on
the reviewed head the task settled on None (DID NOT RAISE); with the
change the CancelledError propagates and the failure is logged.

Signed-off-by: yetuge <2219677952@qq.com>

---------

Signed-off-by: yetuge <2219677952@qq.com>
2026-09-25 14:22:34 +08:00
Chau Vu
887883a58e
fix(harness): initialize Article.url to prevent AttributeError in to_message (#5785)
* fix(harness): initialize Article.url to prevent AttributeError in to_message

* chore(tests): format test_readability with ruff and unify imports
2026-09-24 09:43:16 +08:00
Lts1sds
3fdf04597e
fix(gateway): classify Windows SVG MIME alias as active content (#5594)
* fix(gateway): classify Windows SVG MIME alias as active content

Treat Windows' image/svg alias like the standard image/svg+xml active content type.

* test(gateway): cover Windows SVG MIME alias

Pin image/svg classification independently of the host MIME database.

* docs(utils): document platform MIME aliases

Record the shared active-content classification invariant.
2026-09-20 15:23:19 +08:00
JasonH
82cf57a9c3
fix(utils): return empty text for content-less messages (#5563)
* fix(utils): return empty text for content-less messages

message_content_to_text fell through to str(content), so a message whose
content is None yielded the truthy literal "None". Two call sites already
work around it with a local `or ""` and name the helper in the comment; the
subagent executor's `text if text else "No response generated"` fallback and
the archive's `if not text: continue` skip cannot work around it, so a
content-less terminal turn was reported as an answer of "None" and a
content-less LLM error fallback surfaced "None" instead of its error_detail.

* test(utils): cover non-None content compatibility and document fallbacks

* test(utils): cover contentless task history and refresh guard comments

---------

Co-authored-by: Lengshuang <90967079+Lesereingrape@users.noreply.github.com>
Co-authored-by: JasonH <4430962+yang0228@users.noreply.github.com>
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-09-19 10:56:21 +08:00
NEEDI
990c7b95aa
fix(uploads): handle UTF-8 BOM in document summaries (#5541)
Co-authored-by: NEEDI <298523066+sherxlg-gif@users.noreply.github.com>
2026-09-19 10:08:09 +08:00
Zeren Wang
a58ab484a6
feat(projects): Projects MVP Phase 2 — instructions, document shelf, promotion, trash (#5443)
* feat(projects): Projects MVP Phase 2 — instructions, document shelf, promotion, trash

Implements docs/superpowers/specs/2026-09-12-projects-mvp-phase2-design.md
(issue #5160, tracker #5129) in the slice order of the spec's §16.

Slices:
- A: ProjectsConfig + write-time 422 UTF-8 byte cap; PROJECT_CONTEXT_KEY
  admission pinning (both server-owned sets + worker hoist); latest-only
  request-scoped <project> block via DynamicContextMiddleware
  wrap_model_call/awrap_model_call (idempotent reassembly, reserved ID
  prefix + marker + provenance, never persisted); journal audit
  fingerprints; Instructions tab.
- B: ProjectDocumentRow + migration 0023; ProjectDocumentRepository with
  locked check-and-set; hash-qualified immutable shelf storage with
  Paths helpers; upload/list/content/delete-to-trash routes; project
  delete trashes the shelf in-transaction; request-scoped bounded
  <documents> index with honest count/shown + actionable overflow note;
  list_project_documents/read_project_document tools registered only on
  pinned runs; PAT allowlist + drift guards; blocking-IO anchors.
- C: shared thread-upload ingestion service (uploads router refactored to
  parity); POST from-thread with provenance; attach-to-thread with
  lock-staged copy (archived source allowed); read-only thread-files
  view with per-group truncation reporting.
- D: restore (restored/merged/not_found/no_target/content_missing; no
  file moves), purge (continuous row lock across unlink/delete/commit,
  retryable on FS errors), retention sweep (lazy + startup, 24h orphan
  guard, row-side reconciliation never deletes).
- E: Documents tab (shelf + conversation-files browser, provenance,
  archived banner, content-missing rows), /workspace/trash route,
  sidebar entry, composer attach handoff, i18n (en-US/zh-CN), e2e mocks
  + specs.

Review hardening folded in (10 rounds, all with tests):
- force active shelf content (HTML/XML family) to download; nosniff on
  artifact + content responses; unified unsandboxed-iframe PDF preview
  (fixes the pre-existing Chromium sandbox blank in the artifact viewer)
- scope document trash to the URL project under the document lock
- atomic no-overwrite filename reservation for ALL ingestion (seeded
  claims + os.link commit with suffix retry; same-name re-upload now
  unique-names instead of replacing); hidden staging only, no visible
  placeholders; lease cleanup on setup failure
- serialize conversion under the document lock with post-lock active
  revalidation; drain locked filesystem work on cancellation; preserve
  bytes when an insert's commit state is uncertain (including trashed
  rows)
- original-integrity checks before serving text or cached conversions;
  content_missing surfaced in list responses (UI reads the flag, no
  409-probe); downloads always serve original bytes
- bounded streaming document reads with cached char counts; shelf limits
  declared in middleware release identity
- thread-root confinement for from-thread sources; config fallback
  rejects fractional/infinite values; composer counts staged
  attachments; pending attachments persist until submission or removal;
  in-flight instruction/rename edits survive save refetches; shelf and
  trash pagination; conversation-file and thread-files pages stay
  subscribed to refetches

Docs: README/README_zh, backend API.md/ARCHITECTURE.md, AGENTS.md
contracts, config.example.yaml projects block.

Review follow-ups (head b4807477 → this revision):
- The trash retention sweep is split so repeated lazy triggers stay
  bounded: the indexed expiry purge still runs on every trigger
  (GET /api/trash/documents, POST /api/trash/purge) while the
  O(all rows + all files) reconciliation is throttled to one run per
  user per 15 minutes (process-local, per-user window). The startup
  sweep now runs as a background task instead of blocking gateway
  readiness, and shutdown awaits it (bounded).
- The export scrub (stripInternalMarkers) is fence- and indentation-aware
  like the render path, so a pasted, fenced <project>/<documents> snippet
  survives markdown export while real injected blocks (never fenced) are
  still removed. Fence regexes moved to a dependency-free leaf module to
  avoid the messages↔streamdown import cycle.
- The artifact viewer's PDF iframe no longer carries an added title
  attribute (the upstream e2e contract locates it via :not([title])), and
  the upstream artifact-preview spec now pins the new contract: PDFs
  render unsandboxed, images keep sandbox="".

* fix(projects): round-2 review — cancel an overrun trash sweep, restore the PDF frame title

- Shutdown cancelled only the shield around the background startup sweep,
  so an all-users reconciliation that outlived the 5s budget kept walking
  rows and files while the document repo and DB engine were disposed
  underneath it. The wait now lives in `_shutdown_startup_trash_sweep`,
  which cancels the task and drains it before worker exit: the shield
  keeps the wait bounded, the cancel makes it final (CancelledError lands
  at the sweep's next await, and `_run_startup_trash_sweep` only catches
  `Exception`, so nothing swallows it).
- The browser-preview iframe lost `title={getFileName(filepath)}` in the
  previous fix round, leaving the PDF frame without an accessible name
  while its siblings keep theirs. Restore it (WCAG frame titles), assert
  it in the DOM test, and anchor the e2e on `iframe[title="report.pdf"]`
  instead of `iframe:not([title])`.

* fix(projects): round-3 review — report the sweep's late finish, not a phantom cancel

`Task.cancel()` returns False when the sweep already finished inside the
window between the deadline firing and the cancel, so the shutdown log
claimed a cancellation that never happened. Branch on that outcome: the
warning stays for a real cancel, a late finish is logged at info, and both
paths still reap the task before worker exit.

* fix(projects): round-4 review — make Empty trash delete what it confirms

`POST /api/trash/purge` only ran the retention sweep, and the sweep's
candidate selection is age-gated, so a freshly trashed document survived
"Empty trash" even though the confirmation promises that every listed
document is permanently deleted. With one trashed row the route answered
`{"purged": 0}` and left it in place; `GET /api/trash/documents` sweeps
expired rows before listing, so the visible rows were normally ineligible
for the action by construction.

Empty trash now drives `purge_all_trashed`: the caller's trashed rows
(`list_all_trashed`, no age filter) each go through the same guarded,
row-locked `purge` as the single-document delete — bytes first, then the
row, in one transaction — so a row restored mid-flight is skipped instead of
force-deleted, and an unlink failure rolls that row back and answers 500 with
a retryable message. Retention expiry stays where it was: the sweep's
`purge_candidates` is now the only age-gated selection, and the lazy
retention sweep still runs on the listing and at startup.

Tests: the router suite replaces the retention-gated expectation with the
reviewer's repro (fresh row purged, bytes unlinked, shelf and other users'
trash untouched, a failing unlink stays retryable and 500); a blocking-I/O
anchor drives the new entry point through the offload; the mocked e2e covers
the action end to end; a new real-backend spec performs it against the real
gateway and re-reads `GET /api/trash/documents`. README, API, ARCHITECTURE
and the phase-2 design docs (en+zh) state the age-independent contract.
2026-09-16 18:46:18 +08:00
Hyeonsang Cho
bbced51022
fix(gateway): close two input-sanitization bypasses (#5375)
* fix(gateway): reject forged framework-injection markers in run input

`is_genuine_user_message` treats `hide_from_ui` and a human `name="summary"`
as proof the framework authored a message, and `InputSanitizationMiddleware`
skips those — escaping a real reminder's blocks would corrupt trusted context.
Neither marker was server-owned, so an external caller could set either one and
place a raw `<system-reminder>` outside the user-input boundary markers, which
the lead-agent system prompt declares trusted internal framework data. The
`hide_from_ui` variant is also filtered out of the thread UI, so the forgery
was invisible where it landed.

Both markers are now stripped from untrusted input, on the run path and on the
thread-state mutation route that writes straight into a checkpoint. Framework
injection happens inside the graph and never crosses this boundary, so nothing
the framework does is affected, and `trusted_internal` callers (IM channels,
the MCP task-notification launcher) keep writing hidden messages.

HumanInputCard replies are the one legitimate external `hide_from_ui`: the
frontend sends it alongside a `human_input_response` payload, so a message
carrying a valid one keeps the marker. That buys no bypass — the predicate
already classifies those as genuine, so they stay sanitized.

The name check reuses the predicate's own `_SUMMARY_MESSAGE_NAME` rather than a
fourth copy of the literal, and matches by `isinstance` exactly as the predicate
does: `HumanMessageChunk` is a `HumanMessage` whose `type` is not `"human"`, so
a type-based check would leave that subclass's marker settable. `name` is only
reserved on human messages — on a ToolMessage it is the tool's own name.

Three tests in test_gateway_services.py and test_message_provenance.py asserted
that a caller-supplied `hide_from_ui` survives. That assumption was the bypass;
they now pin the opposite, with a genuinely caller-owned key kept alongside to
prove the stripper is surgical.

* fix(agents): sanitize every genuine user message, not only the newest

The input guardrail scanned backwards for the first genuine user message and
returned, so only the newest turn was ever sanitized. The transformation is
request-scoped (`wrap_model_call`, never written to state), so thread state
keeps the raw text: once a newer turn arrived, the previous turn's payload was
replayed to the model verbatim, outside the boundary markers the lead-agent
prompt declares trusted framework data. The guardrail therefore held for
exactly one model call.

Reaching it needed no forged metadata and no crafted request body — type the
payload in one turn, then send anything at all in the next. A single request
carrying two user messages did it in one shot, since every message but the last
was skipped.

`_process_request` now walks the whole list and `_sanitize_message` owns the
per-message work; every existing branch (the `original_user_content` split for
upload turns, the multimodal rfind fallback, the metadata repair) is unchanged.
Framework-injected messages stay excluded by `is_genuine_user_message`.

Unexpected errors now fail open per message rather than per request. Iterating
history widened the old blast radius: one unprocessable row would have dropped
sanitization for the whole request, handing an attacker the newest turn by
crafting an older one. `GraphBubbleUp` still propagates.

Side effect worth noting: each turn's rendering is now stable across model
calls. Previously a turn was wrapped on its own call and unwrapped on the next,
changing the prompt prefix behind the newest turn and defeating prompt caching.

test_only_processes_last_user_message pinned the old scope; it now pins that
every turn is processed, and keeps driving the `wrap_model_call` entry point.

* docs: record the message-metadata trust boundary and sanitization scope

`agents/middlewares/AGENTS.md` owns the depth for InputSanitizationMiddleware
and documented only the `original_user_content` half of its trust boundary. Left
alone it would teach an agent that `hide_from_ui` is caller-owned and that the
guardrail covers one turn — and the usual failure mode is an agent "restoring"
the behaviour it believes was lost. The entry now carries both markers, the
HumanInputCard exception, the whole-history scope, and the per-message fail-open
rule.

The note lives only there. The root and `backend/AGENTS.md` layers are
orientation that points at the module guides owning the depth, and
`backend/AGENTS.md` is inherited by every backend chain — prose added there
inflates more than twenty of them, and `scripts/check_agent_guidance.py` shows
the middlewares chain has about a kilobyte of room against its hard limit.

CHANGELOG.md and CHANGELOG_zh.md record it under Security, continuing the
existing prompt-injection lineage.

* fix(gateway): mark caller-hidden messages instead of stripping the marker

Review follow-up. Stripping a caller-supplied `hide_from_ui` closed the bypass
but broke three frontend senders that use the marker purely to keep a context
message out of the transcript: the quoted conversation context
(`buildHiddenConversationQuoteMessage`), the sidecar context prompt
(`buildHiddenSidecarContextMessage`), and the agent save command. None carries a
`human_input_response`, so the HumanInputCard carve-out did not cover them, and
nothing else hides them — `_is_branch_visible_message` and the frontend's
`isHiddenFromUIMessage` both key solely on `hide_from_ui`, and no backend reads
`conversation_quote_context` or `sidecar_context`. All three would have rendered
as user-visible chat bubbles.

The marker plays two roles and only one of them is a vulnerability. The security
requirement is that a caller-supplied marker cannot skip sanitization, not that
it cannot hide a message. So the roles are separated instead of the marker being
removed: the Gateway keeps it and stamps the server-owned `UNTRUSTED_INPUT_KEY`,
and the guardrail now asks `requires_input_sanitization` — the mark, else the
genuine-user test. Hidden stays hidden; untrusted content is sanitized either
way. The reserved `summary` name is handled the same way and no longer rewritten.

Marking rather than removing is also the safer shape in general: `hide_from_ui`
is read for presentation, journal persistence, memory filtering and IM outbound
as well, and this boundary should not silently change any of them.

`is_genuine_user_message` is deliberately left alone. `ToolReceiptMiddleware`
uses it for turn-boundary detection, where a caller's hidden context message must
keep counting as not user-authored; widening it there would move the ledger's
turn window. `requires_input_sanitization` sits beside it in `message_utils` so
the two questions can be compared.

The three tests that asserted a caller-supplied `hide_from_ui` is removed now
assert it survives and carries the mark — which restores the original intent of
the two provenance cases, whose comment already read "caller-owned keys must
survive".

* docs(gateway): rewrite normalize_input's docstring around the mark

Review follow-up. The paragraph still described the pre-4a3344f6 strip model and
contradicted both the implementation and the middlewares AGENTS.md paragraph
updated in that same commit: it called `hide_from_ui` server-owned, said
carrying it skips sanitization entirely, and repeated the premise this branch
disproved — that HumanInputCard replies are the only legitimate external use.

It now describes what the code does: the markers stay caller-owned and are
preserved because three frontend senders rely on `hide_from_ui` for hiding
alone, the message is stamped with `untrusted_input` instead, and
`requires_input_sanitization` sanitizes it anyway. `untrusted_input` joins the
server-owned inventory in the preceding paragraph, which is what makes the stamp
unforgeable and unclearable.

The three surrounding docstrings now also say that these functions mark as well
as strip; `_strip_external_message_metadata` had advertised only the removal,
leaving a reader no way to find the stamp from the name.

* fix(gateway): mark state writes whose message omits additional_kwargs

Review follow-up. The state-route half of the fix missed the most natural
request shape. `_strip_external_metadata_from_message_like` returned early when
`additional_kwargs` was absent or not a dict — there was nothing to strip — and
that early return also skipped the mark. A `POST /threads/{id}/state` body of
`{"values": {"messages": [{"role": "user", "name": "summary", "content":
"<system-reminder>…</system-reminder>"}]}}` therefore reached the checkpoint
unmarked. The messages reducer's `convert_to_messages` then supplies
`additional_kwargs={}`, so at model-call time `requires_input_sanitization` fell
back to `is_genuine_user_message`, which a `summary` name fails, and the forged
tag reached the model raw and outside the boundary markers.

A missing or non-dict `additional_kwargs` is now treated as empty for both the
strip and the mark. The identity return is kept for the case where nothing
changes, so an ordinary key-omitted message does not gain an empty dict just by
passing through. The run path was never affected: `normalize_input` coerces to
BaseMessage first, which always carries the dict.

Every existing state-write test supplied an `additional_kwargs` dict, which is
why this shape slipped through; the regression now covers it at the route and
end to end through the reducer into the guardrail.

While checking the neighbouring shapes, `_skips_input_guardrail` keyed off key
presence where `is_genuine_user_message` keys off truthiness, so
`hide_from_ui: False` — already covered without a mark — would have been
stamped. It now mirrors the predicate exactly, as its docstring claimed.

* docs(middlewares): compress the sanitization note to fit the guidance chain

main's growth left the middlewares AGENTS.md chain 84 bytes under its hard
limit, and the fuller wording did not fit. The load-bearing facts stay — the
markers are marked rather than stripped, and the scan covers every turn — since
those are the two an agent editing this middleware could otherwise get wrong.
The full model lives in the normalize_input, _mark_untrusted_framework_markers
and requires_input_sanitization docstrings.

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-09-14 09:54:42 +08:00
tiammomo
f4e740bc49
fix(uploads): bound document outline and preview text (#5323)
* fix(uploads): bound document outline and preview text

Bound each document outline title to 200 characters and each fallback preview to 2000 characters across its lines, including omission markers.

Refs #5322

Signed-off-by: tiammomo <26957354+tiammomo@users.noreply.github.com>

* test(uploads): cover exact preview budget and restore title guidance

Signed-off-by: tiammomo <26957354+tiammomo@users.noreply.github.com>

---------

Signed-off-by: tiammomo <26957354+tiammomo@users.noreply.github.com>
2026-09-12 14:28:15 +08:00
tiammomo
b9d6b16084
fix(uploads): recognize valid ATX headings in document outlines (#5316)
* fix(uploads): recognize valid ATX headings in document outlines

Exclude hashtags and indented code from uploaded document outlines; normalize valid ATX heading markers.

Fixes #5313

Signed-off-by: tiammomo <26957354+tiammomo@users.noreply.github.com>

* test(uploads): format long-heading regression command

Signed-off-by: tiammomo <26957354+tiammomo@users.noreply.github.com>

---------

Signed-off-by: tiammomo <26957354+tiammomo@users.noreply.github.com>
2026-09-12 12:50:22 +08:00
Shxiao
572744975d
fix(tools): run tool assembly off-loop at async entry points (#5224)
* fix(tools): run tool assembly off-loop at async entry points

get_available_tools() may block on MCP cache initialization while it is
called on async agent-assembly paths (task_tool, durable batch execution),
stalling the calling event loop for the full discovery duration.

Dispatch the (unchanged, synchronous) assembly call to a worker thread via
asyncio.to_thread at the two async entry points so the loop keeps processing
requests, SSE frames, cancellations, and timers.

Fixes #5172

* fix(tools): offload lead-agent assembly off-loop and pin with blocking-io anchors

Review follow-up for #5224:

- run_agent now dispatches agent_factory(...) through asyncio.to_thread, so
  lead-agent assembly (including both get_available_tools call sites in
  _assemble_lead_agent) runs off the event loop — the Gateway headline
  scenario from issue #5172.
- _ensure_sync_invocable_tool takes a double-checked threading.Lock, making
  the in-place tool.func wrap on the shared tool singletons explicitly
  single-shot now that assembly can run concurrently on worker threads.
- Add backend/tests/blocking_io/test_tool_assembly_offloop.py: blocking-probe
  anchors for task_tool and SubagentBatchService._execute_item under the
  strict Blockbuster gate, plus a meta-check proving the gate trips on the
  exact syscall class (ExtensionsConfig.from_file on the loop). Verified the
  anchor goes red when the offload is flattened back to a plain call.

* fix(gateway): build checkpoint state accessor off-loop; anchor run_agent offload

Review follow-up for #5224:

- Add abuild_checkpoint_state_accessor (asyncio.to_thread around the
  unchanged sync builder) and switch every async call site to it: the
  stateless_wait route, thread_runs, both threads call sites, and the
  build_thread_checkpoint_state_accessor boundary. The agent-factory
  assembly re-enters get_available_tools() and may block on MCP cache
  initialization; repeat calls hit _state_accessor_graph_cache and only
  pay the thread hop.
- Add a third blocking-io anchor driving the real run_agent with minimal
  RunManager/bridge stubs; the factory performs a real production blocking
  read (ExtensionsConfig.from_file()) and the test asserts assembly never
  runs on the main thread. Verified the anchor goes red when the run_agent
  offload is flattened back to a plain call.
- Adapt the test_threads_router checkpoint-builder patch sites to the new
  async name.

* refactor(tools): carry assembly offloads on a dedicated bounded pool

Review follow-up for #5224:

- Add utils/assembly_io.py: a dedicated ThreadPoolExecutor (default 8
  workers, DEER_FLOW_ASSEMBLY_WORKERS-overridable, mirroring
  utils/file_io.py and tools/sync.py) with run_assembly(), which copies
  contextvars explicitly. A hung stdio MCP server parks its worker for
  the full MCP timeout; carrying assembly hops on the loop's default
  executor would let a few parked assemblies queue every other
  to_thread/run_in_executor(None, ...) caller behind them.
- Switch all four offloads (run_agent, task_tool, batch _execute_item,
  abuild_checkpoint_state_accessor) to run_assembly().
- State the cold-path behavior in the accessor docstring: the graph
  cache validates factory identity, so non-identity-stable factories may
  duplicate lead-agent assembly across concurrent readers (MCP discovery
  stays process-wide single-flight); the pool bounds the duplicates.
- Add a fourth blocking-io anchor driving build_thread_checkpoint_state_
  accessor with a per-resolution fresh factory (always a cache miss) and
  the real production blocking read; enumerate all four offloads in the
  gate's module docstring. Verified the anchor goes red when
  abuild_checkpoint_state_accessor is flattened back to a plain call.

* fix(subagents): revalidate batch item before launch; make assembly pool observable

Review follow-up for #5224:

- _execute_item() revalidates the durable state right after assembly and
  before executor.execute_async(): renew_item_lease() returns valid=False
  when cancel_batch() terminalized the item or the lease was lost while
  assembly was parked, and the launch is skipped (the canceller already
  finalized the item). Previously the launch was unconditional and the
  poll loop's cancellation checks only started after execution began.
- Regression test driving the real SQLite repository: a blocking assembly
  probe parks _execute_item, cancel_batch() lands, and the launch is
  skipped with the item staying cancelled. Verified the test goes red
  when the revalidation is removed.
- run_assembly() tracks pending assemblies and logs a throttled WARNING
  once the pending count exceeds the worker count, so assembly starvation
  (workers parked on a hung MCP server) is distinguishable from idle.
- The run_agent blocking-io anchor now binds a sentinel extension
  snapshot via ctx.extensions and asserts the factory observed it through
  get_agent_build_extensions(), pinning run_assembly()'s ContextVar
  propagation. Verified red when ctx.run is dropped.
- Document the assembly pool in backend/AGENTS.md.

* fix(utils): decrement the assembly pending count on the pool thread

The pending-assembly counter behind the starvation warning decremented
from the asyncio future's done callback, which never fires once the
submitting loop is closed while its worker is still running: the count
ratcheted up permanently and eventually fired the starvation warning
with no starvation behind it (reproduced at 97dc9bec by review).

Decrement instead from the dispatched work item: run_assembly() wraps
func so a finally drops the count under the pending lock on the pool
thread, and the done callback is gone.

Pin the counter with tests/test_assembly_io.py: a healthy call returns
the count to zero, and an abandoned loop (stopped while the worker is
parked) does not wedge it — the abandoned case goes red against the old
done-callback decrement.

* docs(utils): fix the pending-counter comment after the decrement move

The comment still described the removed done-callback decrement,
contradicting _work()'s own comment; state the actual mechanism
(increment on the loop before dispatch, decrement from the dispatched
work item's finally on a pool thread).

* test(gateway): retarget checkpoint-accessor stubs to the services seam

thread_runs and runs now call abuild_checkpoint_state_accessor, so the
upstream wait-reader, regenerate-prepare, and idempotency tests must stub
the sync builder where abuild resolves it (app.gateway.services); stubbing
the removed router re-exports fails with AttributeError at setup. The
async seam semantics are unchanged: run_assembly invokes the stubbed
sync builder off-loop and propagates its return values and exceptions.

Move the agent/tool assembly off-load note from backend/AGENTS.md to
deerflow/utils/AGENTS.md (next to assembly_io.py) so the effective
instruction chain for agents/middlewares no longer grows past the AG002
hard limit.

* fix(runtime): serialize same-key accessor assembly and release queued-cancel slots

Address the three review follow-ups on the assembly off-load:

- assembly_io: a job cancelled while still queued never runs its work
  item, so the dispatched finally never fired and _pending_assemblies
  stayed elevated until a false starvation warning. Exactly-once cleanup
  now rides the concurrent future's cancelled() state — cancel() only
  succeeds before the executor starts the item, so cancelled() is true
  precisely when the finally will never run — plus a submit-failure
  release; the one-worker queued-cancellation case is pinned red/green.
- services: overlapping cold readers sharing one cache key could both
  run full agent assembly. _state_accessor_graph now serializes per key
  through a thread-side KeyedLockTable (pool threads, no running loop)
  and re-validates factory/app-config identity under the lock, so the
  factory runs exactly once while identity changes still rebuild. Cache
  dict access is lock-guarded now that construction runs off-loop.
- guidance inventory: register deerflow/utils/AGENTS.md in
  EXPECTED_GUIDANCE_PATHS so test_repository_has_the_approved_scoped_
  guidance_shape matches the relocated assembly note (CI shard 4).

* test(keyed-lock): pin KeyedLockTable reclamation and waiter bypass directly

Thread-side counterparts of the async table's own tests: overlapping
hold() calls serialize (a late arrival joins the live entry instead of
creating a second lock that bypasses a queued waiter), the last check-in
pops the entry, and many unique keys leave the registry empty. Both
regressions verified red — popping unconditionally trips the late-arrival
test, never reclaiming trips the many-keys test.

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-09-12 07:41:24 +08:00