70 Commits

Author SHA1 Message Date
Totoro
0efdf8e7d8
fix(sandbox): cut read_file output at a line boundary and name the next start_line (#5474)
* fix(sandbox): cut read_file output at a line boundary and name the next start_line

read_file head-truncates at a character offset and its marker told the model
to continue with start_line/end_line while reporting only character counts,
so the cut usually fell mid-line and the model had to guess which line to
continue from. The cut now lands on the last line boundary the budget allows,
and the marker reports lines shown of lines total, keeps the character
counts, and names the exact next start_line. When the line at the cut is
longer than 4,096 characters (minified sources, one-line JSON) the cut stays
at the character limit and the marker names the line it fell inside, so a
re-read of that line is the continuation. Reads under the limit are unchanged.

* fix(sandbox): make the read_file continuation hold for ranged reads and long lines

Line numbers in the truncation marker are now file line numbers: read_file_tool
passes start_line - 1 as the line offset, so a ranged read that is itself
truncated names the right next line instead of one relative to its slice. A
ranged read is a provider slice joined with newlines, so the tool also says
so and a trailing newline there counts as an empty last line.

The long-line fallback now names a continuation only when it makes progress:
a read from the cut line when the whole line fits such a read, a single-line
read (start_line = end_line) when only the line alone fits max_chars, and bash
when even that cannot return it; the single-line form names no further line
after the last line of the read. The budget reserves one extra character so a
newline sitting exactly at the limit still counts as a complete line, the
"fits a fresh read" check uses a pessimistic estimate of the follow-up read's
marker, and a budget too small for any marker still returns a marker instead
of a bare prefix.

Adds unit cases for the ranged-read offset, the newline-at-budget edge, the
single-line-read and bash forms, tiny budgets and empty last lines, plus
end-to-end tests that drive read_file_tool with a LocalSandbox and follow the
markers across reads, asserting the kept segments reproduce the file without
gap or overlap.

* fix(sandbox): keep naming the next line after a bounded read's last line

A ranged read with an end_line below the file's length is a slice that stops
mid-file, so the single-line-read continuation must still name the line after
the slice's last line; only a read that reached the end of the file names
nothing further. The tool passes whether the read was bounded by an end_line
separately from the joined-lines hint, because a start_line-only read also
runs to the end of the file.

A blank line and a line past the end both read back as an empty slice; the
tool now tells them apart with a two-line probe, so a continuation named by a
marker that lands on a blank line answers "(empty)" rather than
"(start_line exceeds file length)".

* test(sandbox): adapt upstream continuation checks after rebase

---------

Co-authored-by: Totoro-qaq <279883115+Totoro-qaq@users.noreply.github.com>
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-09-16 23:57:38 +08:00
xiaodu55
49f2197ba1
fix(sandbox): report the line a read_file truncation lands on (#5478)
* fix(sandbox): report the line a read_file truncation lands on

The read_file tool head-truncates at a character offset and tells the
model to continue with start_line/end_line, but the marker reported only
character counts ("showing first N of M chars"), so the model had no way
to know which line the cut fell on — the cut almost always lands mid-line
and read_file output carries no line numbers (#5475).

The marker now also reports the 1-indexed line holding the first hidden
character and the file's total line count, and names the exact resume
point: "... [truncated: showing first N of M chars (cut lands in line L
of T). Use start_line=L — optionally with end_line — to continue without
a gap] ...". Resuming at the reported line is gap-free whether the cut
lands mid-line or exactly after a newline.

The marker length budget accounts for the new fields, so the
len(result) <= max_chars contract still holds.

* fix(sandbox): report absolute lines in ranged-read truncation markers

Review follow-up on #5478: read_file_tool runs the same truncation on
ranged reads (start_line/end_line), where the slice's line 1 is the
requested start_line, not the file's first line. The marker's reported
lines were slice-relative while the model reasons in absolute file lines,
so the resume hint could re-issue the identical start_line forever
(repro: resume at 831 -> "cut lands in line 831 of 5170" -> start_line=831).

_truncate_read_file_output gains a line_offset parameter (the 0-based
absolute line of the slice's first line) and reports absolute lines for
both the cut position and the range end; read_file_tool threads
effective_start - 1 through. Full reads pass the default offset 0 and are
byte-identical.

Regression tests pin the absolute coordinates and that the resume point
strictly advances past the slice start.
2026-09-16 22:24:01 +08:00
Hyeonsang Cho
ed986a10ef
fix(sandbox): report truncated remote glob and grep results (#5427)
* fix(sandbox): report truncated remote glob and grep results

BoxLite, Tenki, E2B, and OpenSandbox run find/grep in the sandbox, cap
the raw output with `| head`, and then filter those lines in Python:
ignored directories such as node_modules are dropped and grep's glob
scope is applied. They reported truncated only when max_results matches
survived the filter. When the capped lines were mostly filtered out, a
search with real matches past the cap came back short or empty with
truncated=False, and glob_tool/grep_tool rendered it as "No files
matched" / "No matches found". With the default max_results=200 and
1,200 files under node_modules, glob("**/*.py") reported no matches for
a workspace that has src/app.py.

remote_search_command now lets one line past its limit through, and
parse_remote_search_output(..., limit=) returns RemoteSearchOutput(text,
truncated): the first `limit` lines and whether the extra line arrived.
Exactly `limit` lines stays a complete result. Each provider passes the
cap it already computed to both calls and returns that truncated from
glob and grep when fewer than max_results results survive filtering.

The glob and grep tools now describe an empty truncated result as
incomplete instead of reporting no matches, which also covers AIO grep's
forwarded truncated flag. Sandbox.glob/grep document truncated as "the
matches may be incomplete".

* docs(changelog): reference #5427 in the remote search truncation entry

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-09-14 15:38:34 +08:00
Shxiao
d5ae3882b6
fix(sandbox): reverse-resolve forward-slash spellings of Windows host paths (#5373)
* fix(sandbox): reverse-resolve forward-slash spellings of Windows host paths

Forward resolution deliberately spells resolved paths with forward
slashes in commands and file content (#3869: backslashes break bash
escapes), but the reverse scanner anchored its matches on the native
backslash base, so on Windows every forward-resolved path that came back
in command output or agent-written files leaked the raw host path
instead of mapping to its container path. Match separator-agnostically
in LocalSandbox like sandbox.tools already does, align the two
regex-cache tests with the documented spellings, and refresh the
path_patterns rationale comments that described the old asymmetry.

* test(sandbox): pin the reverse mask to separator-agnostic matching

The flag is the entire Windows fix but is invisible on POSIX CI, so
assert the routing kwargs in the direct-helper wiring test — the same
pin test_tools_mask_patterns_route_through_the_helper already applies to
the sandbox.tools copy. A revert to separator-exact matching now fails
on every platform instead of silently reintroducing the host-path
leak on Windows.

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-09-14 07:30:34 +08:00
Shxiao
fa89a12526
fix(sandbox): mask output tails into POSIX-style virtual paths (#5247)
* fix(sandbox): mask output tails into POSIX-style virtual paths

The output maskers slice the matched path tail from the original
output. With separator-agnostic matching, a Windows-spelled nested
tail kept its backslashes and was spliced into the POSIX-style virtual
path, so glob results and masked read output showed mixed paths like
/mnt/user-data/workspace/pkg\util.py or
/mnt/skills/integrations/lark-cli\lark-doc\SKILL.md. Virtual paths are
always POSIX-style, so normalize nested tails to forward slashes the
same way depth-1 tails already end up. Depth-1 tails and the callable
replacer (LocalSandbox._reverse_resolve_path) were unaffected.

Pin the nested-tail contract in test_sandbox_path_patterns; the
previously failing glob-tool and skills-masking regressions now pass
on Windows hosts.

* refactor(sandbox): share the mask tail-splicing rule; guard it on Linux CI

Review follow-up for #5247:

- hoist the tail-splicing rule (slice off the base, strip leading
  separators, normalize the rest to "/") into
  path_patterns.normalize_mask_tail and import it at both call sites,
  so the two maskers can only drift in their matching logic, not in
  the splice;
- add test_mask_local_paths_normalizes_windows_spelled_skill_tails,
  which spells the skills host root and the output with Windows-style
  strings so the nested tail keeps backslashes on every platform.
  Reverting the mask_local_paths_in_output-side normalization now goes
  red on Linux CI too, not only on Windows hosts.
2026-09-09 10:09:28 +08:00
gus
47f43f79f4
fix: improve local environment detection guidance (#5111)
Co-authored-by: angus-guo <217034332+angus-guo@users.noreply.github.com>
2026-09-02 21:35:33 +08:00
Aari
9e0fbd60fa
fix(sandbox): isolate concurrent subagent shell sessions (#5134)
* fix(sandbox): isolate concurrent subagent shell sessions

* fix(sandbox): make execution acquire idempotent

* fix(sandbox): close execution lifecycle gaps

* fix(sandbox): serialize retained client lifecycle

* fix(sandbox): close remaining client lifecycle gaps

* fix(sandbox): unwind failed client lookup

* fix(sandbox): protect internal lease identities

* fix(sandbox): make cancellation reconciliation durable

* fix(sandbox): fence cancelled workers and IM uploads
2026-09-02 21:05:23 +08:00
Zeren Wang
a06a6fed7e
feat(harness): deterministic acceptance checklist for subagent delegations (RFC #4651, layer 2) (#5109)
* feat(harness): deterministic acceptance checklist for subagent delegations (RFC #4651, layer 2)

PR4 of RFC #4651: check lead-supplied acceptance_criteria in code when a
subagent completes, so objectively checkable requirements can never be
silently passed by a self-report.

- subagents/acceptance_checks.py: deterministic leaf families —
  file:<path> exists|non-empty and file_written:<path> read through
  read_current_file_content scoped to the shared thread workspace; the
  read uses the sandbox-native virtual path form (the local read
  validator and provider mount tables resolve /mnt/user-data/... paths,
  not host paths); the scope decision canonicalizes with realpath on the
  local sandbox so workspace symlinks cannot escape into uploads; a
  remote provider's "Error: ..." return string is normalized to a
  failed check (provider-typed via is_local_sandbox); a
  UnicodeDecodeError marks a binary deliverable as existing and
  non-empty; out-of-scope paths degrade to UNVERIFIED.
  tests_passed:<command> anchors to a matching recorded bash execution
  with status=success and a test-summary shape; matching is
  shell-structure aware with control-flow attribution (span must end at
  the last segment with provable execution), negating-option values are
  ineligible evidence and a target negated anywhere in the command
  degrades the match, extra flags must be selection-preserving, extra
  positionals widen only after a path-scoped criterion, truncated
  commands degrade via command_truncated, the summary shape is read
  only from output attributable to the matched segment (preceding
  segments provably silent by invocation form), and pass shapes require
  a nonzero passed count. Criterion text is neutralized with
  neutralize_untrusted_tags before storage/rendering. Anything else
  renders UNVERIFIED, never silently passed.
- executor: accumulate bounded bash command/output evidence per streamed
  chunk (merged by tool_call_id, newest-capped) so subagent
  summarization compacting earlier messages cannot erase a recorded
  execution; the recorded status is the actual shell exit status parsed
  from the output's exit marker (signed codes included; the remote
  Command exited with code N form is accepted only as the whole trimmed
  output), falling back to deerflow_tool_meta only when no marker
  exists.
- sandbox providers: e2b/opensandbox/tenki/boxlite append the
  LocalSandbox-style "Exit Code: N" marker on nonzero exit even with
  non-empty output; aio propagates the SDK's structured exit_code on
  both exec paths the same way; local timeouts append Exit Code: 124;
  and _truncate_bash_output always preserves a trailing exit marker
  (signed included) inside its budget, with a 32-char floor raising any
  smaller configured limit, so the actual shell outcome always survives
  in the output text.
- task_tool: run the checklist offloaded (asyncio.to_thread) on the
  completed branch, failure-isolated; stamp the verdict into result
  metadata and render the per-criterion section into the model-visible
  result text.
- status contract: additive subagent_acceptance_verdict transport with
  read-side structural validation.
- delegation ledger: entry carries the verdict and renders a compact
  acceptance segment; gateway strips caller-forged verdicts from both
  ledger entries and message metadata, like the citation verdict.
- blocking-IO anchor pins the offload (teeth proven red->green); leaf
  read errors catch only OSError/SandboxError so unexpected errors reach
  the task-tool-level isolation instead of being mislabeled.

* fix(harness): close acceptance evidence gaps from review (RFC #4651 PR4)

- negating options: overlap with a matched criterion target is now
  checked by path/nodeid prefix, not exact token equality — excluding a
  sub-path of the criterion's selection (pytest tests --deselect
  tests/unit/test_auth.py) degrades to UNVERIFIED instead of holds
- output attribution: any redirection token in the matched final segment
  makes the recorded tail non-attributable (> / >> / 2> are word
  characters to the parser, so redirection was invisible to the matcher)
- silent-source allowlist narrowed from any *activate suffix to the
  */bin/activate shape
- status_contract docstring: restore the shared-fixture sentence and
  note subagent_acceptance_verdict is deliberately outside the fixture
- executor: update_bash_executions publishes [] (stream carried no
  bash-family calls) instead of collapsing it into None, mirroring
  update_tool_receipts

* fix(harness): close acceptance residual gaps from re-review (RFC #4651 PR4)

- tests_passed: add error outcomes to the fail shapes — "4 passed, 1 error"
  and pytest's "ERROR <nodeid>" short summary no longer satisfy the pass
  shape when the exit status is swallowed (|| true) or absent; zero-error
  counts stay clean.
- file leaves: bound the deliverable read — a "wc -c" shell size probe
  answers files above 50k bytes without loading ~2x their size, honoring
  the host-bash kill switch and falling back to the full read on any
  non-integer rendering, so verdicts never get less sound.
- executor: record the exit marker text as status_marker on harvested bash
  evidence; the leaf detail now reports the marker actually seen instead of
  asserting a failure indistinguishable from the command's own trailing text.
- extend the blocking-IO anchor to drive the probe branch inside the
  offload; teeth re-verified red->green.

* fix(harness): close acceptance forgery and bound gaps from P2 re-review (RFC #4651 PR4)

- file leaves: never read unbounded — size is established first (os.stat on
  the validated local host path, so the host-bash-disabled configuration
  needs no shell; a guarded wc -c on remote providers that renders
  missing/unreadable in its own words). Above the 50k cap the leaf answers
  from the size alone, at/below it the full read runs, and an
  unestablishable size degrades to UNVERIFIED instead of an unlimited
  fallback read.
- output attribution: source/. prefixes are never provably silent — a
  crafted */bin/activate path shape says nothing about what the script
  prints, so sourced segments can no longer lend a passing summary.
- executable identity: an explicitly path-spelled criterion now requires
  the same normalized executable path; the basename rule stays only for
  deliberately bare criterion commands.

* fix(harness): run acceptance size probe outside subagent-controlled state (RFC #4651 PR4)

- remote probe no longer runs in the sandbox's persistent shell: a fresh
  env -i /bin/sh with absolute-path stat/realpath (poisoned functions,
  aliases, PATH, exported functions, IFS, locale cannot steer it), plus a
  marker env routing AIO onto a fresh per-call bash.exec session.
- metadata-only: stat never opens content, so a FIFO deliverable cannot
  block the parent for the provider's idle timeout; non-regular files
  (fifo/dir/symlink) degrade to UNVERIFIED.
- containment canonicalized against the literal mount root: a
  final-component symlink or a swapped parent directory (root included)
  cannot redirect the check outside shared storage; unprovable layouts
  degrade to UNVERIFIED.

* fix(harness): canonicalize probe containment against the canonical mount root (RFC #4651 PR4)

Literal-root equality made every remote file leaf permanently UNVERIFIED
on e2b and Tenki, which realize /mnt/user-data as a symlink to the home
dir by default (e2b bootstrap 'sudo ln -sfn', Tenki best-effort symlink).
Containment now compares the file's realpath against the mount root's
realpath — exactly what the provider's own read path resolves, so probe
and read-back stay consistent; final-component symlinks stay rejected by
the non-dereferencing stat, and an intermediate dir-link escape under a
sane root still lands ESCAPED. The inner script is a module constant and
the suite now executes the composed probe for real against on-disk
layouts (real dir, symlinked prefix, final symlink, fifo, missing,
dir-link escape), which the canned-output stub could not see.

* fix(harness): close bare-criterion negation and CDPATH summary channels (RFC #4651 PR4)

- matching: a criterion with no positional selection target (bare pytest,
  make test) stands for the runner's default selection, so ANY negating
  option (--ignore/--deselect/...) makes the recorded run a different
  selection — unprovable. The overlap guard only sees consumed criterion
  tokens, which a bare criterion does not have; scoped criteria keep the
  unrelated-exclusion behavior.
- attribution: cd is no longer blanket-silent — CDPATH makes cd print the
  resolved (subagent-chosen) destination and the pass shapes match as
  substrings, so one mkdir 'all tests passed' plus an export minted a pass
  for any quiet command. A cd argument or CDPATH= value (export or leading
  assignment) carrying any summary shape makes the segment non-silent;
  shape-free cd dir wrappers keep matching.
- docs: _truncate_bash_output states the effective 32-char floor (the
  guarantee previously read as an unconditional max_chars bound).

* fix(harness): close env-assignment and expansion channels in acceptance matching (RFC #4651 PR4)

Self-audit in the shape of the last review rounds — channels the matcher
classified as accounted-for that can change what runs, narrow the
selection, or lend the summary text:

- env assignments are no longer blanket-stripped: only an allowlist of
  inert display/CI knobs (CI, NO_COLOR, PY_COLORS, ...) may prefix a
  matched span, and a non-allowlisted assignment in any preceding segment
  (pure-assignment or export NAME=) is state pollution — PATH redirects
  the executable, LD_PRELOAD/PYTHONPATH/NODE_OPTIONS inject code,
  PYTEST_ADDOPTS/GOFLAGS/MAKEFILES inject selection-changing inputs,
  BASH_ENV runs arbitrary shell startup. All degrade to unprovable.
- runtime expansions: any span token carrying /$( )/backticks, any
  negating-option value carrying an expansion or glob (unknown excluded
  set), and any extra executed token carrying glob metacharacters
  (crafted option-looking filenames narrow invisibly) are unprovable.
  Criterion-side globs stay self-consistent (literal match).
- cd: an argument carrying a runtime expansion or glob is non-silent
  (unknown destination, unknown print); CDPATH= assignments are now
  handled as state pollution at the match layer, subsuming the
  value-shape special case.

* fix(harness): persistent-shell evidence, exact env sets, option-arity scoping (RFC #4651 PR4)

- tests_passed: on a persistent-shell provider (new
  Sandbox.persistent_shell_sessions capability, set by AioSandbox) every
  leaf degrades to UNVERIFIED — any earlier call in the shared session
  could have mutated the state the clean-looking run executed in, and
  only a fresh controlled session (RFC section 6 verifier) can prove
  otherwise. The flag is read from the provider registry without
  acquiring a sandbox.
- env assignments: the allowlist is gone — no variable is provably inert
  across repositories (CI/DEBUG are routinely read by tests). The span's
  assignment prefix must equal the criterion's exactly (values included,
  order-insensitive); any assignment or export NAME= in a preceding
  segment is state pollution.
- scoping: positional targets are now read by option arity, so a path
  embedded in an option (--basetemp=/tmp/p, --junitxml=/tmp/r.xml) never
  counts as a selection target and an extra positional after such a
  criterion narrows the default selection it denotes.

* fix(harness): stamp shell provenance at harvest, close export/unset and arity gaps (RFC #4651 PR4)

* fix(harness): split physical newlines as shell separators in acceptance matching (RFC #4651 PR4)

* fix(harness): scope cd wrappers to thread data roots, pin accepted boundaries (RFC #4651 PR4)

* fix(harness): preserve criterion connectors, prove file_written readable, fail-closed shell capability (RFC #4651 PR4)

* fix(harness): compare only the connector prefix, tolerate trailing criterion semicolons (RFC #4651 PR4)

* fix(harness): preserve continuation-line operators, keep ./-spelled executable identity (RFC #4651 PR4)

* fix(harness): render criteria single-line so a multiline criterion cannot inject a forged checklist line (RFC #4651 PR4)

* fix(harness): reject parent-traversal executable tokens in acceptance matching (RFC #4651 PR4)

* fix(harness): reject parent-traversal negated values in acceptance matching (RFC #4651 PR4)
2026-09-01 16:13:41 +08:00
Aari
cdc886ae85
fix(sandbox): make tool descriptions optional (#4878)
* fix(sandbox): make tool descriptions optional

* fix(sandbox): address optional description review

* test(sandbox): pin optional description contracts
2026-09-01 14:15:26 +08:00
Janlay
45adb8fbb5
perf(runtime): bound gateway memory after terminal runs (#5112)
* fix(runtime): clean up terminal run records

* perf(sandbox): bound local path caches

* perf(runtime): release terminal run cycles

* fix(runtime): address terminal cleanup review

* fix(runtime): clean up after end publish failure

* fix(runtime): guard terminal cleanup from cancellation

* fix(runtime): discard fenced journal buffers

* fix(runtime): harden abort and teardown paths
2026-09-01 10:56:43 +08:00
PeaceMaker-best
137a3cb60d
fix(authz): recheck policy before sandbox reuse (#5006)
* fix(authz): recheck policy before sandbox reuse

* fix(authz): avoid duplicate async sandbox checks

* fix(authz): scope sandbox decision across middleware

* fix(authz): construct async providers on the event loop

* test(authz): avoid cold imports under Blockbuster

---------

Co-authored-by: 嗜鵼 <hy2010hy2010@qq.com>
Co-authored-by: PeaceMaker-best <221849497+PeaceMaker-best@users.noreply.github.com>
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-08-30 15:29:51 +08:00
hataa
cc6a2657e7
feat(authz): enforce sandbox:execute authorization at sandbox acquisition (#4063 Phase 3) (#4911)
Sandbox is an execution environment, not a named resource: multiple tools
(bash, read_file, write_file, glob, grep, ...) depend on it, all funneled
through ensure_sandbox_initialized / ensure_sandbox_initialized_async. Gate
the single acquisition entry point (single source of truth) instead of
maintaining a sandbox-tool-name set in middleware:

- authorize_sandbox_execution helper (authz/sandbox_authz.py) checks
  authorize("sandbox", "execute", target="*") — a binary judgment
  (can this role use the sandbox at all); RBAC allow:"*"/true permits,
  allow:[]/false denies.
- lazy path: ensure_sandbox_initialized (+ async) calls the gate before
  provider.acquire.
- eager path: SandboxMiddleware.before_agent / abefore_agent call the gate
  before _acquire_sandbox.
- deny raises SandboxAuthorizationError (SandboxError subclass) which
  propagates through tool execution as a friendly ToolMessage (RFC §9:
  'not a crash').
- authorization.enabled: false is a no-op everywhere; provider errors
  follow fail_closed (deny) / fail_open (allow).

12 tests in tests/test_sandbox_authorization.py cover disabled/allow/deny/
deny-via-bool/no-policy-unrestricted/provider-error-fail-closed/open/
internal-caller + ensure_sandbox_initialized deny (never acquires) and
allow (acquires) integration paths.
2026-08-24 16:32:06 +08:00
Xinmin Zeng
42fd5aa0b5
fix(sandbox): keep skill reads on provider mappings (#4792) 2026-08-13 21:20:49 +08:00
Minh Vu
904cee4a72
fix(sandbox): push read_file ranges into sandbox reads (#3824)
* fix read_file range validation and passthrough

* chore: format test_aio_sandbox.py

* test: cover e2b sandbox read_file line-range behavior

* fix(boxlite): support ranged file reads

* fix(sandbox): reject non-positive start lines

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-07-30 07:53:10 +08:00
Yufeng He
8eb3be59bd
fix(sandbox): unwrap Overwrite-wrapped state in ensure_sandbox_initialized (#4429)
* fix(sandbox): unwrap Overwrite-wrapped state in ensure_sandbox_initialized

The same fork-restored wrapper that crashed after_agent also reaches the sandbox init path, where sandbox_state.get() on the Overwrite object raises AttributeError. Share the unwrap helper from #4381's follow-up module deerflow/sandbox/overwrite.py and apply it at both init sites.

Signed-off-by: Yufeng He <40085740+he-yufeng@users.noreply.github.com>

* fix(sandbox): note why discarding fork_restored at the reuse sites is safe

* fix(sandbox): unify the Overwrite unwrap helper and pin the fall-through

- middleware.py now imports unwrap_sandbox from overwrite.py instead of
  keeping a second local copy whose docstring had already drifted; the
  shared helper covers both crash forms (subscript TypeError and the
  .get()-form AttributeError)
- test the acquire fall-through: when the fork-restored id is gone from
  the provider, a fresh sandbox is acquired and the stale wrapped state
  is replaced by the plain acquired dict
- the reuse-path test now also asserts runtime.state["sandbox"] stays
  wrapped, pinning the don't-treat-as-owned contract after_agent relies on

Signed-off-by: Yufeng He <40085740+he-yufeng@users.noreply.github.com>

* fix(sandbox): unwrap Overwrite state in the sibling sandbox readers

Signed-off-by: Yufeng He <40085740+he-yufeng@users.noreply.github.com>

---------

Signed-off-by: Yufeng He <40085740+he-yufeng@users.noreply.github.com>
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-07-29 07:04:26 +08:00
Ryker_Feng
aacb99cfd2
feat(lark): sidecar credential broker for sandbox lark-cli (Pattern B) (#4501)
* feat(lark): sidecar credential broker for sandbox lark-cli (Pattern B)

Removes the plaintext Lark credential mounts (appSecret + OAuth tokens)
from the sandbox container. A long-running broker sidecar owns lark-cli
and the per-user config/data dirs and serves the command surface over
Pod loopback; the sandbox gets only a forwarding shim on PATH, so the
raw credential files never exist in the sandbox filesystem.

- lark_broker.py: stdlib-only loopback broker (argv passthrough with
  shell=False, server-injected credential env, bounded I/O) + shim
  script constant + install-shim mode.
- docker/lark-cli-broker: init(install-shim) + serve image.
- provisioner: LARK_CLI_BROKER_IMAGE + provision_lark_cli_broker →
  shim init container + lark-cli-broker sidecar (config/data mounted
  sidecar-only); credentials dropped from the sandbox container;
  /api/capabilities reports lark_cli_broker_image. Broker supersedes
  the Pattern A init-container binary when both are configured.
- gateway: lark_cli_env_overlay(broker=True) omits config/data env;
  sandbox_lark_broker_active() TTL-cached mode resolver; broker added
  to sandbox_runtime_mode / readiness and the settings UI.

Opt-in and off by default (empty LARK_CLI_BROKER_IMAGE ⇒ no change).

Closes #4338

* fix(lark): address Pattern B broker review findings (#4501)

Follow-up to the sidecar credential broker addressing the PR #4501 review:

- shim: split the on-PATH lark-cli into a /bin/sh launcher + Python shim body
  so broker mode fails loudly (exit 127, actionable message) instead of ENOEXEC
  when the sandbox image ships no python3; interpreter pinnable via
  DEERFLOW_LARK_BROKER_PYTHON. Launcher bakes in the shim's absolute path since
  $0 is the bare command name when run off PATH.
- broker: drop the dead cwd payload field (broker can't see the sandbox FS) and
  document the command-surface-only / no-file-IO limitation.
- broker: return a structured 500 JSON on unexpected exec errors so the shim
  gets a meaningful message, not an opaque transport failure; set a handler
  socket timeout to bound slow/stuck connections.
- broker: add an opt-in DEERFLOW_LARK_BROKER_DENY_SUBCOMMANDS denylist that
  refuses secret-dumping subcommands before spawning the binary, forwarded from
  the provisioner sidecar.
- gateway: tighten the per-bash-call broker probe timeout (1.5s) and cache
  negatives longer (300s) so non-broker remote-provisioner users don't pay a
  latency hit; guard the mode cache with a lock; drop the dead
  _probe_provisioner_lark_cli_init_image wrapper.
- docs: remove the broken design-doc link from the broker README.

Adds tests for launcher python resolution, cwd omission, denylist enforcement,
500-on-error, hot-path probe timeout + negative caching, and provisioner
denylist-env wiring.
2026-07-28 22:54:44 +08:00
Aari
d455a1815e
fix(sandbox): allow grep to search a single file (#4512) 2026-07-28 07:49:13 +08:00
Ryker_Feng
7aa314b4c1
feat: add Lark CLI integration (#3971)
* feat: add lark cli integration

* fix: polish lark integration actions

* feat: support lark incremental permissions

* fix: detect lark authorization completion

* fix: harden lark integration install

* feat: expand lark auth scopes and reuse host auth in sandbox

Default lark auth to least-privilege (recommend=false, base sign-in only)
and expose the full set of lark-cli --domain business domains as native
--domain grants instead of a 4-domain read-only mapping. Resolve the
skill pack from the latest larksuite/cli GitHub release at install time
with content-hash integrity, and surface version/runtime drift in status.

Share the per-user lark-cli config/data profile between the Gateway
Settings auth flow and agent conversations by mounting the integration
dirs into the AIO sandbox and injecting the matching env for lark-cli
commands, with an allowlisted extra_mounts path in the provisioner/K8s
backend and traversal guards on integration paths.

* style: fix lint issues from ruff and prettier

Sort imports in the provisioner PVC test and re-wrap two long i18n
description strings to satisfy backend ruff and frontend prettier CI.

* fix(lark): address managed integration review feedback

* fix(frontend): stabilize integrations settings e2e

* test(sandbox): isolate remote backend legacy visibility check

* test: fix backend unit failures after merge

* Harden Lark integration review fixes

* Format Lark integration E2E test

* fix(lark): harden sandbox credential exposure and status disclosure

Address willem_bd's security review on PR #3971:

- Mount the per-user lark-cli config dir (long-lived appSecret) read-only
  into the AIO sandbox; only the refreshable-token data dir stays writable.
- Redact host filesystem paths (install_path, cli.path) from
  GET /lark/status and the config/auth complete responses for non-admin
  callers, fail-closed on any auth error.
- Document the npm postinstall trade-off (--ignore-scripts is not viable
  because @larksuite/cli fetches its platform binary in postinstall).
- Document the sandbox credential trust boundary in AGENTS.md and README,
  pointing at the sidecar-broker follow-up (#4338).

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-07-26 08:09:17 +08:00
Andrew Chen
ae510cb2e8
fix(sandbox): make an empty old_str a no-op in str_replace on any file (#4256)
str_replace guards the replacement with `if old_str not in content`, which
cannot reject an empty old_str -- `"" in content` is always true. So an
empty old_str reached `str.replace("", new_str)`, which inserts new_str at
every character boundary, and the tool rewrote the file while still
returning "OK":

    old_str='', new_str='# H\n'          -> OK, file silently prepended
    old_str='', new_str='X', replace_all -> OK, 'XdXeXfX XmXaXiXnX(X)X:X\nX...'

The empty-file branch above it already handles this case (`if not content:
if not old_str: return "OK"`), and the existing test states the intent
directly: "An empty old_str is a no-op edit and remains a benign OK". That
contract just never held once the file had content.

The tool is registered by default (config.example.yaml) and its schema
declares old_str as a plain string with no minLength, so a model can emit
"" legitimately; read-before-write only compares a hash and lets it past.

Check old_str first so the no-op holds whatever the file contains. The
empty-file case folds into the same not-found branch, which keeps its
message and behaviour.

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-07-22 09:20:54 +08:00
hataa
10890e10a8
feat(authz): propagate trusted authorization principal context (#4203) 2026-07-17 14:49:51 +08:00
Aari
bcee5a9061
refactor(sandbox): give the host→virtual output-mask regex a single owner (#4108)
* refactor(sandbox): give the host→virtual output-mask regex a single owner

Two call sites rewrite host paths back to their virtual form in text that
reaches the model — LocalSandbox._reverse_output_patterns (bash output) and
sandbox.tools._compiled_mask_patterns (glob/grep/ls results) — and each built
the same `escape(base) + boundary + tail` rule from its own copy.

That duplication has already produced two bugs: #4035 added the segment
boundary to the reverse patterns and missed the masking patterns, and #4053
had to add the same boundary to the other copy. Extract the rule into
sandbox/path_patterns.py so a third copy cannot silently disagree.

The extraction is not a pure move: the two sites disagree on the base. tools.py
derives bases from _path_variants (which yields Windows spellings) and matches
them against output whose separators it does not control, so it relaxes the
separators inside the base; LocalSandbox resolves its bases from the running
platform and must not be widened. That difference is now an explicit
`separator_agnostic` parameter rather than an accident of two implementations.
The boundary and tail constants are private: build_output_mask_pattern is the
only supported spelling, so a third site cannot import the pieces and hand-roll
a variant.

Behavior is unchanged at both sites — pinned by tests that reproduce each
pre-extraction expression byte-for-byte.

* test(sandbox): pin the base the helper must not normalize

Review notes on #4108.

The committed snapshot compares the helper against hand-copied literals of the
pre-extraction expressions, so its red-ness rests on those literals, not on the
length of _BASES -- both sides compute the same expression, and 5k fuzzed bases
produce zero byte-differences. Mutating the helper one clause at a time (12
mutations over the boundary, the tail and the escape/replace) shows the seven
committed bases catch 11: the miss is a helper that normalizes its input by
rstripping a trailing separator. Only a trailing-slash base or a Windows drive
root catches that, and Path.resolve() / str(Path(...)) strip trailing slashes,
so neither call site can produce the former. C:\ survives resolve() with its
separator intact, so that is the one base worth adding.

Also point local_sandbox's comment at path_patterns, the owner, instead of
citing _content_pattern as the class reference, and drop the rationale it now
duplicates from the owner's docstring -- a second copy of the explanation drifts
the same way the second copy of the regex did. The site-specific half stays.

Comments and test data only; no behavior change.
2026-07-13 18:34:41 +08:00
Aari
c82fba41d9
fix(sandbox): guard the command path-translation regex with a segment boundary (#4110)
replace_virtual_paths_in_command matches the virtual root with no
segment-boundary lookahead:

    re.compile(rf"{re.escape(VIRTUAL_PATH_PREFIX)}(/[^\s\"';&|<>()]*)?")

The trailing group needs a "/" to consume anything, so when the character after
/mnt/user-data is "-", ".", "_", a digit or a letter, the group matches empty
and the bare root still matches. The substitution then rewrites it to the
thread's host user-data directory and the rest of the sibling name rides along,
so a command naming a prefix sibling of the mount root is pointed at a real host
directory outside the mount contract:

    cat /mnt/user-data-backup/secret.txt  ->  cat <host>/user-data-backup/secret.txt

which reads the host file. This is the same defect as #4035 (reverse patterns)
and #4053 (masking patterns), mirrored into the virtual->host direction; it is
the last unguarded member of that family.

The boundary class mirrors LocalSandbox._content_pattern's rather than
_command_pattern's: a virtual root can legitimately be followed by ":"
(PATH-style concatenation) or ",", which the shell-oriented class rejects, so
narrowing to it would stop translating paths that translate today. "$" covers a
command ending exactly at the root.
2026-07-12 23:42:58 +08:00
明年我18
0542d3c5f3
fix(sandbox): allow bash after cwd setup failure (#4051) 2026-07-12 23:40:52 +08:00
黄云龙
d2ab5bb819
fix(sandbox): str_replace on empty file only returns OK when old_str is empty (#4079)
str_replace returned "OK" whenever the target file was empty, silently
reporting success even when the model asked to replace a non-empty string
that could not possibly be present. Only short-circuit to "OK" when old_str
is also empty; otherwise return the standard not-found error.
2026-07-12 23:04:59 +08:00
Aari
97e2268d52
fix(sandbox): stop glob/grep/ls from surfacing disabled skills' files (#4096)
* fix(sandbox): stop glob/grep/ls from surfacing disabled skills' files

The disabled-skill gate checks the path a tool is given, but ls, glob and
grep all descend from it and return other paths, so a root above a disabled
skill still serves its files. glob and grep never called the gate at all;
ls called it only on its own argument and still leaked from a category root.

Add the entry gate to glob/grep, and filter what all three return through
the existing fail-closed _is_disabled_skill_path. The verdict is memoized per
skill because ExtensionsConfig.from_file() is uncached, so a per-match check
would turn a 100-match grep into 100 config reads.

* fix(sandbox): normalize trailing slashes in the disabled-skill path check

Review follow-ups on the disabled-skill gate:

- _extract_skill_name_from_skills_path returned "" instead of None for a
  category directory carrying a trailing slash. LocalSandbox.list_dir appends
  "/" to directories, so `ls /mnt/skills` yields "/mnt/skills/public/", giving
  parts ["public", ""]. The empty name skipped the `skill_name is None`
  short-circuit and fell through to a config read, landing on the right outcome
  only because unknown skills default to enabled. Drop empty segments so a
  trailing-slash category root takes the existing category-root branch.

- ls_tool resolved the runtime user id twice per call; hoist it into a local,
  matching glob_tool/grep_tool.

- Cover the CUSTOM path: custom/legacy skills resolve their enabled state
  through the per-user _skill_states.json, a different store from the public
  skills' extensions_config.json, and no automated test exercised it.
2026-07-12 11:32:41 +08:00
Aari
1df9abc924
fix(sandbox): guard the output-masking regex with a segment boundary (#4053)
* fix(sandbox): guard the output-masking regex with a segment boundary

`_compiled_mask_patterns` builds the same class of host→virtual matcher as
`LocalSandbox._reverse_output_patterns`, but without the segment-boundary
lookahead that one carries. The trailing group needs a separator to consume
anything, so when the character after a host base is `-`, `.`, `_`, a digit or
a letter, the group matches empty and the regex still matches the bare base.

`replace_match` then takes its `matched_path == base` branch and rewrites the
sibling: with `/mnt/skills` mounted at `.../skills`, output naming a sibling
`.../skills-extra/data.txt` is handed to the model as `/mnt/skills-extra/data.txt`
— a container path forward resolution explicitly refuses to map back, so
reading it raises FileNotFoundError.

This is the sibling site of #4035, which fixed the identical bug in
`local_sandbox.py`. That PR's scope argument enumerated the prefix matchers in
that file and missed this one; `mask_local_paths_in_output` runs on every
glob/grep match and on local bash output.

The boundary class mirrors `_content_pattern`'s, not `_command_pattern`'s: this
runs over arbitrary command output, where a base can legitimately be followed
by `,`, `:` or `\`, all of which the shell-oriented class rejects.

* test(sandbox): anchor the sibling boundary at the ACP source too

The sibling-rejection cases only fed the skills source. `_compiled_mask_patterns`
builds every source's matcher in one loop, so the ACP workspace carried the same
defect: nothing maps its parent, and `/mnt/acp-workspace-backup/hello.py` is
unresolvable in both directions.

User-data is the exception and is now pinned as such: `_thread_virtual_to_actual_mappings`
also maps the virtual root `/mnt/user-data` to the three dirs' common parent, so a
sibling of `outputs` is still inside a mount and has a real virtual path — the output
is byte-identical with and without the boundary. That test is green on main; it guards
the boundary from being narrowed into one that stops translating a mapped path.

Reverting only `boundary` turns the 5 skills + 4 ACP cases red and leaves the 3
user-data cases green.
2026-07-11 23:32:11 +08:00
黄云龙
08fdf61516
fix(sandbox): handle one-sided line ranges in read_file (#4078)
* fix(sandbox): honor single-bound line ranges in read_file

read_file only sliced content when BOTH start_line and end_line were
provided, so read_file(path, start_line=100) or read_file(path,
end_line=50) silently returned the whole file. Handle one-sided ranges:
default the missing bound (start->1, end->EOF), clamp start to 1, and
return clear messages when start_line exceeds the file length or start_line
> end_line.

* address review: guard one-sided end_line <= 0 in read_file

Add symmetric end_line guard and run the inverted-range check regardless
of which bounds are explicit, so a lone end_line<=0 returns a clean
error instead of a negative-index slice. Per @willem-bd review on #4078.

Co-Authored-By: Claude <noreply@anthropic.com>

---------

Co-authored-by: Claude <noreply@anthropic.com>
2026-07-11 23:20:53 +08:00
Zheng Feng
dcb2e687d5
feat(channels): add GitHub as a webhook-driven channel (#3754)
* feat(channels): add GitHub event-driven agents (#3754)

Add a webhook-driven GitHub channel with fail-closed webhook routing, deterministic per-agent PR/issue threads, mention-gated trigger fan-out, GitHub App token injection for sandboxed gh/git commands, and backend/AGENTS.md documentation.

* fix(llm-middleware): classify bare IndexError as transient

Upstream chat providers occasionally return 200 OK with an empty
generations list (observed against Volces "coding" on
ark.cn-beijing.volces.com). When that happens,
langchain_core.language_models.chat_models.ainvoke raises
``IndexError: list index out of range`` at
``llm_result.generations[0][0].message`` and kills the run.

Treat a bare IndexError reaching the middleware as a transient
upstream-payload glitch and route it through the existing
retry/backoff path instead of failing the whole agent run. The
retry budget and backoff schedule are unchanged.

Adds three regression tests covering the classifier and both the
recover-on-retry and exhausted-retries paths.

* fix(runtime): ignore stale LLM fallback markers from prior runs

When a run on a thread ends with the LLM-error-handling middleware emitting
a `deerflow_error_fallback`-marked AIMessage (e.g. after the IndexError
empty-generations classification fix lands), that message is persisted to
the thread's checkpoint as part of the messages channel. LangGraph replays
the full message history in `stream_mode="values"` chunks, so every
subsequent run on the same thread re-streams the stale fallback marker —
and the worker's chunk scanner faithfully picks it up, flipping
`RunStatus.success` to `RunStatus.error` for runs that themselves had
no LLM failure at all.

Snapshot the set of pre-existing message ids from the pre-run checkpoint
and thread it through `_extract_llm_error_fallback_message` /
`_try_extract_from_message` as a filter. Markers on history messages are
ignored; markers on fresh messages produced during this run still trip
the error path. Falls back to an empty set when the checkpointer is
absent or the snapshot can't be captured, preserving the prior behavior
on first-run / no-state paths.

Adds unit tests for the new filter (helper-level and `_collect_pre_existing_message_ids`)
plus an integration test exercising the full `run_agent` path with a stale
history checkpointer.

* fix(channels): make github channel fire-and-forget to avoid httpx.ReadTimeout on long runs

GitHub agent runs (clone -> edit -> test -> push -> PR) routinely exceed
the langgraph_sdk default 300s read deadline. The manager's runs.wait
call kept an HTTP stream open for the entire run lifetime, so the long
run blew up with httpx.ReadTimeout and the outer except branch then
released the dedupe key and emitted a false 'internal error' outbound.

The GitHub channel's outbound send is log-only by design: agents post to
the issue/PR via the gh CLI in the sandbox when they choose to comment
or create a PR. There is nothing for the manager to ferry back, so the
long-poll was pure overhead.

This change adds ChannelRunPolicy.fire_and_forget (default False) and
sets it True for the github channel. When fire_and_forget is True,
_handle_chat dispatches via client.runs.create (short POST, returns
once the run is pending) instead of client.runs.wait, and skips the
response-extraction + outbound-publish block. ConflictError on a busy
thread still trips the standard THREAD_BUSY_MESSAGE path so behavior on
the busy case is preserved for any future non-github fire-and-forget
channel.

Other (non-github) channels are unchanged: their policy defaults
fire_and_forget=False and they continue to dispatch via runs.wait.

Adds 6 regression tests in tests/test_channels.py::TestGithubFireAndForget:
- Default ChannelRunPolicy.fire_and_forget is False.
- The github policy registers fire_and_forget=True.
- github inbound calls runs.create, not runs.wait, with the right kwargs.
- github inbound publishes no outbound on success.
- ConflictError from runs.create still emits THREAD_BUSY_MESSAGE.
- Non-github channels (slack) still dispatch via runs.wait.

* test(lead-agent): accept user_id kwarg in skill-policy test stubs

The two GitHub-channel tests added in #3754 stubbed
_load_enabled_skills_for_tool_policy with a lambda that only accepted
`available_skills` and `app_config`, but the real function (and its call
site in agent.py) also passes `user_id`. This raised TypeError on every
run, failing backend-unit-tests.

Add `user_id=None` to match the three sibling stubs in the same file.

* refactor(gateway): disambiguate context-key set names

The two frozensets _INTERNAL_ONLY_CONTEXT_KEYS and _CONTEXT_ONLY_KEYS
shared a confusable "CONTEXT_ONLY" token in different orders, and the
first broke the _CONTEXT_<X>_KEYS pattern of its sibling
_CONTEXT_CONFIGURABLE_KEYS. Rename to make the distinct axes explicit:

  _CONTEXT_INTERNAL_CALLER_KEYS  - WHO: internal callers (scheduler) only
  _CONTEXT_RUNTIME_ONLY_KEYS     - WHERE: runtime context only, never configurable

Pure rename, no behavior change.
2026-07-04 22:56:24 +08:00
Xinmin Zeng
576577bd32
feat(channels): expose IM channel_user_id to sandbox commands as DEERFLOW_CHANNEL_USER_ID (#3926)
* feat(channels): expose channel_user_id to sandbox commands as DEERFLOW_CHANNEL_USER_ID

IM-channel skills need the sender's platform identity (Feishu open_id,
Slack Uxxx, ...). The channel manager already writes channel_user_id into
body.context, but the Gateway whitelist dropped it. Forward it into the
runtime context only (never configurable, which is checkpointed), and have
bash_tool export it as a fixed env var through a shell-quoted command
prefix.

The identity deliberately does not ride execute_command(env=...): that
channel is reserved for request-scoped secrets, and a non-empty env
switches AioSandbox onto the bash.exec path (fresh session per call,
image >= 1.9.3 required), which would have broken every IM bash command
on older sandbox images and abandoned persistent-shell semantics on new
ones. A command-string export keeps the legacy path, stays visible in
audit logs (it is an identifier, not a secret), and gives per-call
correctness in group chats where one thread and sandbox are shared by
senders with different platform ids.

Skipped on the Windows local sandbox, whose PowerShell/cmd.exe fallback
has no POSIX export.

Part of #3914

* feat(channels): propagate channel_user_id to subagents; cap value length

Review findings from the pre-PR verification pass:

- Subagent delegation dropped the sender identity: task_tool now captures
  channel_user_id from the parent runtime context and the executor
  forwards it into the subagent's context, mirroring the guardrail
  attribution fields (user_role/oauth_*/run_id). Without this, bash
  commands delegated via task lost the group-chat sender's id.
- body.context is client-writable on web requests, so values over 256
  chars are ignored instead of bloating every command string sent to the
  sandbox.

* fix(channels): set-or-unset channel_user_id so identity is per-call regardless of AIO session persistence

Review (willem-bd): the identity export could leak across senders in a
shared group-chat AIO sandbox. The AIO no-env path reuses a persistent
shell session (the class-lock reason, #1433), and the 256-char/type guard
made some commands carry no prefix — so a dropped-id command could resolve
the id a previous sender exported.

Make per-call correctness independent of session semantics: an IM-channel
command (channel_user_id present in context) now always carries an explicit
prefix — export VAR=<quoted> for a valid id, or unset VAR for an unusable
one (empty / non-str / over the cap). Non-IM runs (no key) are untouched.
A prefix unset has none of the '& ; unset' suffix hazard raised earlier.

Verified on a real AIO 1.11.0 container: the no-id shell path auto-creates
a session per call (does not persist today), but an explicit shared session
DOES persist (export stale-A -> readback [stale-A]); the unset prefix
clears it (-> []). So the fix holds even on an image whose no-id path
persists. Regression tests cover the dropped-id group-chat window and the
non-IM passthrough.

Part of #3914

* test(channels): align channel_user_id task test with new Command return shape

The merge from main changed task_tool to return a Command(update=...)
instead of a plain string; update the assertion to extract the tool
message via the existing _task_tool_message helper, matching the sibling
tests. Fixes the CI backend-unit-tests failure introduced by the merge.
2026-07-04 21:18:11 +08:00
Zhipeng Zheng
53a80d3ad1
feat(skills): per-user custom skill isolation with sandbox mounting (#3889)
* feat(skills): per-user skill isolation (#2905)

Implement user-scoped skill storage that isolates custom skills between
users while sharing public skills globally.

Key changes:
- Add UserScopedSkillStorage class for per-user custom skill directories
- Introduce get_or_new_user_skill_storage() factory with user_id context
- Auth middleware sets effective_user_id for request-scoped storage
- Agent/prompt/middleware now use user-scoped storage and prompt cache
- Sandbox mounts user-scoped skill directories for search/read tools
- Add validate_skill_file_path() to SkillStorage for path security
- Migration script supports --all-users bulk migration
- Frontend: add editable field to Skill type, error check in enableSkill
- All skill categories can be toggled (custom skills default to enabled)
- Update skill-creator SKILL.md with isolation-aware instructions

Tests:
- Add test_user_scoped_skill_storage.py (new)
- Update all existing skill tests for user-scoped storage
- Update sandbox, client, and router tests

* fix(skills): address second-round PR review feedback (#3889)

- P1-1: restrict legacy skill mount to users without custom skills
- P1-2: fail-closed for _is_disabled_skill_path (OSError → return True)
- P2-1: AND-merge global extensions_config skill disabled state
- P2-2: atomic write for _skill_states.json (mkstemp + replace)
- P2-3: normalize X-DeerFlow-Owner-User-Id in trusted boundary
- P2-4: LRU-bounded _enabled_skills_by_config_cache (OrderedDict, maxsize=256)
- P2-5: clear global prompt cache on PUBLIC skill toggle
- P2-6: invalidate skill caches on client.update_skill

* fix(tests): correct tool policy test after merge

* fix(skills): use DEFAULT_SKILLS_CONTAINER_PATH in UserScopedSkillStorage

The "/mnt/skills" literal in UserScopedSkillStorage.__init__ triggers
test_skill_container_path_defaults::test_mnt_skills_literal_is_owned_by_skill_constants_module
on CI. Migrate the default to the existing deerflow.constants constant,
matching the pattern already used by LocalSkillStorage, SkillStorage, and
the durable/tool_error middlewares.

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-07-04 13:54:04 +08:00
AochenShen99
66b9e7f212
feat: emit structured runtime metadata (follow-up#3887) (#3906)
* feat: emit structured runtime metadata

* fix: avoid subagent import cycle in replay gateway

* fix: preserve legacy subtask result parsing

* refactor: tighten runtime metadata contracts

* fix(middleware): keep recovery hint on task exception wrapper content

The structured-metadata stamp overwrote the wrapper text with the bare
task-failure message, dropping the model-facing 'Continue with available
context, or choose an alternative tool.' guidance that every other tool
exception keeps. Append the shared hint after the formatted message.

* fix(subagents): require lowercase hex for result_sha256 reader

Length-only validation accepted any 64-char string; a faulty serializer
or relaying wrapper could store a non-digest value in the delegation
ledger. Enforce the producer's hexdigest shape with a fullmatch.

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-07-04 11:27:19 +08:00
Nan Gao
b81334ccfe
feat(middlewares): deterministic read-before-write version gate for file tools (#3911) (#3912)
* docs(specs): read-before-write gate design for issue #3857 output layer

* docs(plans): read-before-write gate implementation plan (#3857)

* refactor(sandbox): extract read_current_file_content helper (#3857)

* feat(middlewares): read-before-write version gate for file tools (#3857)

* test(middlewares): pin async read-before-write gate paths (#3857)

* feat(config): wire ReadBeforeWriteMiddleware into runtime chain, default on (#3857)

* docs(sandbox): document read-before-write gate in tool docstrings and AGENTS.md (#3857)

* docs(plans): align plan doc with landed config_version (17) and drop machine-specific paths

Addresses Copilot review comments on #3912.

* fix(middlewares): read-before-write gate — error-string sandboxes fail open; serialize gate+execution per path (#3912 review)

- AIO/E2B read_file reports failures (incl. missing files) as 'Error: ...'
  strings instead of raising; the gate treated that string as existing file
  content and blocked first-write creation. Error-string reads now count as
  uninspectable: gate fails open, no mark is stamped.
- LangGraph runs one AIMessage's tool calls concurrently, so two same-turn
  writes could both pass on one stale mark before either mutation landed
  (and a read mark could hash a version the model never saw). Gate check +
  tool execution (and read + mark stamping) now share a per-(thread, path)
  critical section, separate from the tool-internal file_operation_lock.
2026-07-03 17:21:04 +08:00
bjtolo
cd982d6751
fix(sandbox): normalize Windows backslash paths to forward slashes in bash commands (#3869)
* fix(sandbox): normalize Windows backslash paths to forward slashes in bash commands

On Windows, `replace_virtual_paths_in_command()` and
`LocalSandbox._resolve_paths_in_command()` resolve virtual paths
(/mnt/skills, /mnt/user-data, /mnt/acp-workspace, custom mounts) to
host paths with backslashes (C:\Users\admin\...). Bash interprets
\U, \a, \d, \s, \n, \t as escape sequences, mangling the path.

Fix: add `.replace("\\", "/")` to all path resolution callbacks so
resolved paths use forward slashes, which bash handles correctly on
all platforms and Windows APIs/Python's open() accept natively.

Fixes #3865

* test(sandbox): regression tests for Windows backslash path normalization

Covers replace_virtual_paths_in_command and LocalSandbox._resolve_paths_in_command
with Windows-style backslash paths, asserting no backslashes survive in output.

Closes #3865

* test(sandbox): fix ACP test failure, keep 6 passing regression tests

Removed test_acp_workspace_no_backslash which triggered path traversal
validation. Remaining 6 tests cover user-data (3), skills (1), and
LocalSandbox custom-mount (2) paths — all with Windows backslash paths.

* test(sandbox): restore ACP Windows path normalization coverage
2026-07-03 11:09:26 +08:00
Xinmin Zeng
09988caf95
feat(skills): request-scoped secrets for skills (closes #3861) (#3871)
* feat(sandbox): per-call env injection + platform-secret scrubbing for skills

Add an env parameter to Sandbox.execute_command (abstract + local + AIO) so request-scoped secrets can be injected into skill subprocesses, and scrub platform credentials (*KEY*/*SECRET*/*TOKEN*/*PASSWORD*/*CREDENTIAL*) from the inherited environment by default so scoped injection is not security theatre. LocalSandbox always passes an explicit scrubbed env; AioSandbox routes env-bearing commands through bash.exec(env=) on a fresh session and leaves the legacy persistent-shell path unchanged. Part of #3861. BEHAVIOR CHANGE: execute_command no longer inherits the full os.environ; Windows encoding tests updated to assert the scrubbed dict.

* feat(skills): parse required-secrets frontmatter declaration

Add SecretRequirement and Skill.required_secrets, and parse the required-secrets SKILL.md frontmatter field (a string list or {name, optional} mappings), dropping malformed entries with a warning so one bad declaration does not invalidate the skill. The declared name is both the context.secrets key and the env var injected at activation. Part of #3861.

* feat(runtime): request-scoped secret carrier (context.secrets)

Add SECRETS_CONTEXT_KEY + extract_request_secrets, centralising the context.secrets carrier contract. The existing context passthrough (build_run_config -> _build_runtime_context) already carries the sub-key to runtime.context without mirroring it into configurable; characterization tests lock that behaviour. Part of #3861.

* feat(skills): inject declared secrets at slash-activation into bash env

Binding point A: when a skill is slash-activated, SkillActivationMiddleware resolves its declared required-secrets against the request's context.secrets and writes the per-run injection set to runtime.context. The bash tool forwards that set to execute_command(env=). A skill cannot harvest a host platform credential (is_host_platform_secret guard, cf. GHSA-rhgp-j443-p4rf), and injected values are redacted from bash output (mask_secret_values) so an echoed secret never re-enters the prompt/trace. Part of #3861.

* test(skills): lock the five secret leak surfaces + add trace redaction helper

Regression tests assert the secret value is absent from all five surfaces: prompt (activation message), checkpoint (graph state vs context separation), audit (journal records names only), trace (metadata builder never copies context; never mirrored to configurable), and stdout (mask_secret_values). Add redact_secret_context_keys as a defensive helper for any context serialization. Part of #3861.

* docs(backend): document request-scoped secrets for skills

Add Request-Scoped Secrets subsection (Skills) + env policy note (Sandbox) and the execute_command(env=) signature change, per the doc-sync policy. Part of #3861.

* fix(skills): close gaps found by end-to-end verification of request-scoped secrets

Real-gateway e2e + independent review of #3861 surfaced three defects, now fixed:

1. Slash activation never fired in the live chain. InputSanitizationMiddleware
   wraps user input in BEGIN/END markers before SkillActivationMiddleware sees it,
   and the original text was only preserved when an upload or IM channel set it.
   For a plain text message the slash command became undetectable, so no secret
   was ever resolved. Fix: the sanitizer now setdefaults the pre-wrap text into
   ORIGINAL_USER_CONTENT_KEY (additive; sanitization behaviour unchanged), so
   slash activation works for all messages. Pre-existing latent bug surfaced here.

2. The raw request config (with context.secrets) was persisted to runs.kwargs_json
   and echoed by the run API (RunResponse.kwargs). Fix: redact_config_secrets()
   strips secret-bearing context keys from the persisted/echoed copy in start_run;
   the live config that drives the run keeps them. build_run_config now also sets
   configurable.thread_id on the context path (the checkpointer requires it).

3. Connection-string credentials (DATABASE_URL, REDIS_URL, SENTRY_DSN, GH_PAT, ...)
   were not scrubbed from the inherited sandbox env. Fix: env_policy adds a *DSN*
   pattern plus an explicit connection-string denylist (no blanket *URL* — benign
   service URLs stay readable).

Verified end-to-end via a real gateway run (real LLM + skill activation + bash):
the secret reaches the sandbox subprocess and appears in NONE of prompt, trace,
checkpoint, audit, stdout, runs.kwargs_json, or the run API. Part of #3861.

* docs(backend): document the env scrub, persistence redaction, and sanitizer interaction

Sync the Request-Scoped Secrets section with the verification-driven fixes: inherited-env scrub (incl. connection-string denylist), run-record/run-API redaction as the 6th sealed leak surface, and the sanitizer preserving original content so slash activation fires. Part of #3861.

* fix(skills): inject caller secret over scrubbed host value; drop redundant host-name guard

A real-world demo (a skill calling a third-party cloud API with a request-scoped
key) exposed that the is_host_platform_secret guard was both wrong and harmful:
it refused to inject a caller-supplied secret whenever a same-named variable
existed in the Gateway env — which is exactly the #3861 use case (a per-user key
overriding a shared platform key). The guard was also redundant: build_sandbox_env
already scrubs secret-looking names from the inherited env before injection, so a
skill can never read a host credential — it only ever receives the caller's value.

Remove the guard; the injected (caller) value simply wins over the scrubbed host
value. Verified end-to-end: the agent called the real cloud API successfully with
the caller's key, the host's same-named key was scrubbed and never used, and the
caller's key leaked to none of the surfaces. Part of #3861.

* fix(skills): address review on request-scoped secrets (#3861)

Review fixes from PR #3871:

- E2BSandbox.execute_command now accepts env/timeout and routes them to
  commands.run(envs=, timeout=). The bash tool passes env= unconditionally,
  so the prior signature (command only) raised TypeError on every e2b bash
  call and broke e2b deployments entirely. env=None stays backward-compatible.
- SkillActivationMiddleware clears the active-secret set before resolving each
  activation, so a later skill in the same run never inherits an earlier
  skill's injection set (the #3861 contract: a skill only receives what the
  caller supplied AND that skill declared).
- AioSandbox env path uses a dedicated _DEFAULT_HARD_TIMEOUT — bash.exec exposes
  no idle/no-change timeout, so the prior reuse of the legacy idle constant
  conflated wall-clock vs idle semantics. The env path also retries on the
  ErrorObservation signature now, sharing the legacy persistent-shell recovery
  contract.
- mask_secret_values skips values below a minimum length floor so a short
  declared secret (e.g. "42") cannot shred unrelated bytes (exit codes,
  timestamps, sizes) of tool output. The secret is still injected into the
  subprocess; only the output mask skips it.

session_id reuse on the env path is intentionally NOT added: a shared session
could let request-scoped secrets ride the session env into later commands,
which the SDK does not contractually forbid. The fresh-session choice matches
the LocalSandbox model (each call is a fresh subprocess); the trade-off
(consecutive env-bearing calls do not share cwd/venv/exports) is documented on
_execute_with_env.
2026-07-03 07:51:22 +08:00
DanielWalnut
fe82552023
fix(sandbox): stop blocking bash commands (e.g. servers) from hanging the turn (#3864)
* fix(sandbox): stop blocking bash commands from hanging the turn

Starting a server through the host bash tool (e.g. `python -m http.server`)
could hang the whole turn for the full 600s timeout. `LocalSandbox.execute_command`
used `subprocess.run(capture_output=True)`, whose captured pipes are inherited
by any process the command spawns — so a backgrounded long-lived process
(`server &`) keeps the read end open and blocks `communicate()` until the
timeout fires, even though the foreground command already returned. Commands
that read stdin blocked the same way, and on timeout only the direct child was
killed, leaving orphaned process groups.

Rework the POSIX path to capture stdout/stderr via temp files instead of pipes,
take stdin from /dev/null, and run the command in its own session/process group:

- Backgrounded long-lived processes (servers) now return immediately while the
  process keeps running.
- A command reading stdin gets immediate EOF instead of blocking.
- A genuinely blocking foreground command is bounded by a configurable
  wall-clock timeout; on timeout the whole process group is killed and the agent
  gets an explanatory notice telling it to background long-lived processes.

The timeout is configurable via `sandbox.bash_command_timeout` (default 600).
The Windows path is unchanged. Adds focused regression tests and updates docs.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(sandbox): instruct the agent to background long-lived processes

The code fix bounds a foreground server with a timeout, but the turn still
waits the full timeout before the run continues. Add the prompt-side half:
the bash tool description now tells the model to ALWAYS start long-lived
processes (e.g. web servers) in the background with output redirected, so the
tool returns immediately. The timeout notice points at the same readable
workspace log path. Pins the guidance with a test.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(sandbox): make fallback-kill exception explicit and observable

Address automated review: the inner `except OSError: pass` in
_terminate_process_group silently swallowed the case where the direct-child
fallback kill found the process already gone. Make the intent explicit with a
comment and a debug log instead of a bare pass.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(sandbox): address bash timeout review feedback

* fix(sandbox): document fd cleanup races

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-06-30 14:55:31 +08:00
Eilen Shin
67dd75db62
chore: remove unused private helper functions (dead code) (#3749)
These three module-private helpers have no callers anywhere in the repo
(verified by a repo-wide identifier scan + direct greps; each appears only
at its own definition):

- agents/memory/updater.py: _create_empty_memory (a no-caller wrapper around
  storage.create_empty_memory, which is used directly elsewhere)
- runtime/runs/worker.py: _extract_human_message (also drops the now-unused
  HumanMessage TYPE_CHECKING import and TYPE_CHECKING from typing)
- sandbox/tools.py: _looks_like_unsafe_cwd_target (cwd safety is enforced via
  _is_allowed_local_bash_absolute_path)

Underscore-prefixed = module-internal, so zero references is conclusive.
Route handlers and @compiles-registered functions were excluded as false
positives. Public-surface candidates are noted in the issue, not touched here.

Fixes #3748.
2026-06-24 09:21:50 +08:00
Huixin615
4f192cb469
fix: align sandbox artifact mounts with channel user (#3729)
* fix: align sandbox artifact mounts with channel user

* fix: clean up sandbox user-scoped ids
2026-06-23 23:13:12 +08:00
Eilen Shin
f7f2a500d1
perf(sandbox): cache local-path masking patterns instead of recompiling per match (#3713)
mask_local_paths_in_output runs once per glob/grep match (tools.py:1540,
:1625) and once per bash/ls output, and each call rebuilt every skills /
ACP / user-data masking regex from scratch — Path.resolve() syscalls +
re.escape + re.compile. A grep returning up to 100 matches recompiled the
same patterns 100x.

Compile the host->virtual patterns once per ordered source set via
functools.lru_cache (keyed on the config-stable + per-thread (host,
virtual) pairs, so it self-invalidates when they change) and collapse the
three byte-identical replacer blocks into one applier. Behavior is
unchanged: same patterns, same application order, same per-thread mappings.

Verified behavior-preserving with an equivalence harness (original vs
refactored logic over 54 inputs incl. slash-style variants, base-only
matches, subpaths, overlapping mappings, missing skills/ACP, thread_data
None) -> 0 mismatches. Added cache/consistency tests alongside the
existing masking tests.

Fixes #3712.
2026-06-23 08:32:51 +08:00
Xinmin Zeng
97dd9ecf73
fix(sandbox): stop flagging string-literal path fragments as unsafe absolute paths (#3623)
* fix(sandbox): stop flagging string-literal path fragments as unsafe paths

The host-bash absolute-path guard scans the raw command string, so /segment
sequences inside string literals, f-strings, and templates were treated as
absolute path arguments and rejected — e.g. python -c "print(f'/端口{port}')"
or a REST template /devices/{id}/port. Whether a fragment tripped the guard
depended on the character right before the slash (a word char suppressed the
match), so the same literal could pass or fail unpredictably, pushing the model
into retry loops that bloat context and wall-clock time.

Exempt matches carrying non-ASCII characters or format braces: real host paths
a command would open contain neither, so these are text, not paths. The guard
is best-effort (not a security boundary), and plain ASCII host paths like
/etc/passwd — including ones written inside a code string such as
open('/etc/passwd') — stay rejected.

* fix(sandbox): only exempt identifier-template braces, not bash brace expansion

The literal-fragment exemption exempted any path fragment containing { or },
which let bash brace expansion (cat /etc/{passwd,shadow}) and ${VAR} expansion
reconstitute real host paths past validate_local_bash_command_paths. Tighten
the brace branch to only exempt fragments where every {...} block is a single
identifier-like placeholder (/devices/{id}/port, f-string /{port}); reject
${VAR} shell-variable expansion. Add parametrized regression tests for the
brace-expansion and shell-var bypasses.
2026-06-18 09:27:05 +08:00
Xinmin Zeng
6a4a30fa2b
fix(sandbox): return actionable hint when read_file hits a binary file (#3624)
read_file decodes with UTF-8. Binary uploads (.xlsx, images, ...) raise
UnicodeDecodeError in the sandbox layer. UnicodeDecodeError is a ValueError
subclass, not an OSError, so it bypassed the typed handlers and fell through
to the generic except, surfacing a vague "Unexpected error reading file"
message. The model could not tell the file was binary, so it retried
read_file instead of switching to bash + pandas/openpyxl, burning LLM
round-trips and bloating context with repeated failures.

Add a dedicated UnicodeDecodeError handler that tells the model the file is
binary and to use bash with a suitable library (or view_image for images).
2026-06-17 21:11:44 +08:00
Huixin615
88e36d9686
fix(#3189): prevent write_file streaming timeout on long reports (#3195)
* fix(#3189): prevent write_file streaming timeout on long reports

Adds a layered defense against StreamChunkTimeoutError caused by oversized
single-shot write_file tool calls:

- factory: default stream_chunk_timeout to 240s for OpenAI-compatible
  clients (overridable via ModelConfig.stream_chunk_timeout in config.yaml)
- sandbox/tools: server-side 80 KB length guard on non-append write_file
  calls (configurable via DEERFLOW_WRITE_FILE_MAX_BYTES env var, 0 disables);
  rejects oversized payloads with a structured error pointing the model at
  str_replace or append=True
- middleware: classify StreamChunkTimeoutError as transient but cap retries
  at 1 via per-exception _RETRY_BUDGET_OVERRIDES (same-payload retry on a
  chunk-gap timeout buffers the same way upstream; full 3-attempt loop
  would stack 6-12 min of dead air)
- middleware: surface an actionable user-facing message for stream-drop
  exceptions instead of leaking the raw langchain stack
- prompts: add a routing-style File Editing Workflow hint to both lead_agent
  and general_purpose subagent prompts, pointing the model at str_replace
  for incremental edits (mirrors Claude Code's Edit / Codex's apply_patch)
- tests: behavioural coverage for size guard, retry budget override,
  stream-drop user message, factory default injection

Refs #3189

* fix(#3189): drop stream_chunk_timeout for non-OpenAI providers

Address CR feedback on PR #3195:

- factory: pop `stream_chunk_timeout` from kwargs for any model_use_path other than `langchain_openai:ChatOpenAI` instead of returning early. `ModelConfig.stream_chunk_timeout` is part of the shared schema, so a user-supplied value on a non-OpenAI provider would otherwise be forwarded to its constructor and raise `TypeError: unexpected keyword argument`.

- factory: rewrite docstring to describe the actual `exclude_none=True` behaviour (explicit null is excluded and falls back to the default) instead of the misleading "None falling out via exclude_none=True keeps its value".

- tests: add regression coverage asserting the kwarg is stripped before reaching a non-OpenAI provider's constructor.

Refs: bytedance#3189

* fix(#3189): restrict stream-drop user copy to StreamChunkTimeoutError only

Per CR on #3195: narrow _STREAM_DROP_EXCEPTIONS to StreamChunkTimeoutError. Generic httpx RemoteProtocolError / ReadError fall back to the standard 'temporarily unavailable' copy, since they routinely fire on transient network blips where the 'split the output' guidance is misleading. Retry/backoff classification is unchanged — both remain transient/retriable. Tests updated to reflect new copy, plus a symmetric regression test for ReadError.

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-06-07 17:47:11 +08:00
Lawrance_YXLiao
1c5c585741
fix(runtime): bound write_file execution-failure observations (#3133)
* fix(runtime): bound write_file execution-failure observations

* fix(runtime): preserve write_file error prefixes

* test(runtime): trim write_file prefix assertions

* refactor(runtime): drop redundant exception suffix for permission/directory write errors

Address Copilot review on #3133: the PermissionError and IsADirectoryError
branches now return self-contained, non-redundant messages (e.g.
"Error: Permission denied writing to file: /mnt/...") via direct
truncation, instead of going through _format_write_file_error which
appended a duplicate ": PermissionError: permission denied" suffix.

OSError, SandboxError and the generic Exception branches keep the
unified "Failed to write file '{path}': {ExceptionType}: {detail}"
format so the model still sees a stable, machine-readable error class.

Removes the now-unused message= parameter from _format_write_file_error,
keeping a single code path. Truncation contract (<= 2000 chars) and
host-path sanitization unchanged.

* fix(runtime): handle write_file sandbox init errors

Initialize the requested path before sandbox setup so early sandbox failures can still return a bounded write_file error.

Add a regression test for sandbox initialization failures.

* style(test): format sandbox security tests
2026-05-21 20:35:46 +08:00
AochenShen99
8b697245eb
fix(sandbox): avoid blocking sandbox readiness polling (#2822)
* fix(sandbox): offload async sandbox acquisition

Run blocking sandbox provider acquisition through the async provider hook so eager sandbox setup does not stall the event loop.

* fix(sandbox): add async readiness polling

Introduce an async sandbox readiness poller using httpx and asyncio.sleep while preserving the existing synchronous API.

* test(sandbox): cover async readiness polling

Lock in non-blocking readiness behavior so the async helper does not regress to requests.get or time.sleep.

* fix(sandbox): allow anonymous backend creation

* fix(sandbox): use async readiness in provider acquisition

* fix(sandbox): use async acquisition for lazy tools

* test(sandbox): cover anonymous remote creation

* fix(sandbox): clamp async readiness timeout budget

* fix(sandbox): offload async lock file handling

* fix(sandbox): delegate async middleware fallthrough

* docs(sandbox): document async acquisition path

* fix(sandbox): offload async sandbox release

* docs(sandbox): mention async release hook

* fix(sandbox): address async lock review

Reduce duplicate sync/async sandbox acquisition state handling and move async thread-lock waits onto a dedicated executor with cancellation-safe cleanup.

* chore: retrigger ci

Retrigger GitHub Actions after upstream main fixed the stale PR merge lint failure.

* test(sandbox): sync backend unit fixtures

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-05-21 14:44:34 +08:00
Xinmin Zeng
380255f722
fix(sandbox): uphold /mnt/user-data contract at Sandbox API boundary (#2873) (#2881)
* fix(sandbox): uphold /mnt/user-data contract at Sandbox API boundary (#2873)

LocalSandboxProvider used a process-wide singleton with no /mnt/user-data
mapping, forcing every caller to translate virtual paths via tools.py
before invoking the public Sandbox API. AIO already exposes /mnt/user-data
natively (per-thread bind mounts), so the same code path behaved
differently across implementations — and direct callers like
uploads.py:282 / feishu.py:389 only worked thanks to the
`uses_thread_data_mounts` workaround flag.

Switch the provider to a dual-track cache: keep the `"local"` singleton
for legacy acquire(None) callers (backward-compat for existing tests and
scripts), and create a per-thread LocalSandbox with id `"local:{tid}"`
for acquire(thread_id). Each per-thread instance carries PathMapping
entries for /mnt/user-data, its three subdirs, and /mnt/acp-workspace,
mirroring how AioSandboxProvider mounts those paths into its container.

is_local_sandbox() now recognises both id formats. `_agent_written_paths`
becomes per-thread (it was a process-wide set that leaked across
threads — a latent isolation bug also fixed by this change).

Verified via TDD: a new contract test suite hits the public Sandbox API
directly (write/read/list/exec/glob/grep/update + per-thread isolation +
lifecycle). 3212 backend tests still pass, ruff is clean.

* fix(sandbox): address Copilot review on #2881

Three follow-ups from Copilot's review of the LocalSandboxProvider refactor:

1. Synchronisation: ``acquire`` / ``get`` / ``reset`` mutated the cache without
   any lock, so concurrent acquire of the same ``thread_id`` could create two
   ``LocalSandbox`` instances and lose one's ``_agent_written_paths`` state.
   Add a provider-wide ``threading.Lock`` (matching ``AioSandboxProvider``) and
   build per-thread mappings outside the lock to avoid holding it during the
   ``ensure_thread_dirs`` filesystem touch.

2. Memory bound: ``_thread_sandboxes`` grew monotonically. Replace the plain
   dict with an ``OrderedDict`` LRU capped at
   ``DEFAULT_MAX_CACHED_THREAD_SANDBOXES`` (256, configurable per provider
   instance). ``get`` promotes touched threads to the MRU end so an active
   thread isn't evicted under load. Eviction is graceful: the next ``acquire``
   rebuilds a fresh sandbox; only ``_agent_written_paths`` (reverse-resolve
   hint) is lost.

3. Docs: update ``CLAUDE.md`` to reflect the new per-thread architecture, the
   LRU cap, and that ``is_local_sandbox`` recognises both id formats.

New regression tests:
- Concurrent ``acquire("alpha")`` from 8 threads yields a single instance
  (slow-init injection forces the race window wide open).
- Concurrent ``acquire`` of distinct thread_ids yields distinct instances.
- The cache evicts the least-recently-used thread once the cap is exceeded.
- ``get`` promotes recency so a polled thread survives a later acquire-storm.
2026-05-17 08:26:04 +08:00
Maz Benoscar
30a5846219
fix(tools): make write_file append discoverable in model-facing schema (#2843)
* fix: make tool argument behavior discoverable

The write_file tool already supported append=false by default with append=true for end-of-file writes, but the parsed docstring did not describe append in the model-facing schema. This records the overwrite default and append path in the tool description, adds resilient schema regression coverage, and keeps backend sandbox docs aligned.

The regression now also checks that every public parameter in the existing tool schema test matrix has a description. Enabling docstring parsing on setup_agent and update_agent fills the two existing gaps with their existing Args docs instead of duplicating descriptions elsewhere.

Constraint: Issue #2831 asks for a small docstring/schema discoverability fix without changing runtime file-writing behavior
Rejected: Changing write_file defaults | would alter existing overwrite semantics and broaden the fix beyond schema discoverability
Rejected: Exact phrase assertions | too brittle for future docstring rewording while testing the same behavior
Confidence: high
Scope-risk: narrow
Directive: Keep model-facing tool parameters documented through parsed docstrings or equivalent schema descriptions
Tested: cd backend && uv run pytest tests/test_setup_agent_tool.py tests/test_update_agent_tool.py tests/test_tool_args_schema_no_pydantic_warning.py tests/test_sandbox_tools_security.py::test_str_replace_and_append_on_same_path_should_preserve_both_updates -q
Tested: cd backend && uv run ruff check packages/harness/deerflow/sandbox/tools.py packages/harness/deerflow/tools/builtins/setup_agent_tool.py packages/harness/deerflow/tools/builtins/update_agent_tool.py tests/test_tool_args_schema_no_pydantic_warning.py
Not-tested: Full backend test suite
Co-authored-by: OmX <omx@oh-my-codex.dev>

* Fix the lint error

---------

Co-authored-by: OmX <omx@oh-my-codex.dev>
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-05-10 23:09:03 +08:00
He Wang
7de9b5828b
fix(tools): introduce Runtime type alias to eliminate Pydantic serialization warning (#2774)
* fix(tools): introduce Runtime type alias to eliminate Pydantic serialization warning

Add deerflow/tools/types.py with:

    Runtime = ToolRuntime[dict[str, Any], ThreadState]

Replace every runtime: ToolRuntime[ContextT, ThreadState] and
runtime: ToolRuntime[dict[str, Any], ThreadState] annotation in
sandbox/tools.py, present_file_tool.py, task_tool.py, view_image_tool.py,
and skill_manage_tool.py with the new Runtime alias.

The unbound ContextT TypeVar (default None) caused
PydanticSerializationUnexpectedValue warnings on every tool call because
LangChain's BaseTool._parse_input calls model_dump() on the auto-generated
args_schema while DeerFlow passes a dict as runtime context.
Binding the context to dict[str, Any] aligns Pydantic's serialization
expectations with reality and removes the noise from all run modes.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(tools): extend Runtime alias to setup_agent and update_agent tools

Replace bare ToolRuntime annotations in setup_agent_tool.py and
update_agent_tool.py with the shared Runtime alias introduced in the
previous commit, and add both tools to the Pydantic serialization
warning regression test (13 cases total).

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(tools): loosen Pydantic warning filter to avoid version-specific format

Replace the brittle "field_name='context'" substring check with a looser
"context" match so the assertion stays valid if Pydantic changes its
internal warning format across versions.

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(tools): simplify warning filter and clean up docstring

Remove the "context" substring condition from the Pydantic warning
filter — asserting that no PydanticSerializationUnexpectedValue fires
at all is both simpler and more comprehensive, since the test payload
contains only the tool's own args plus runtime.

Also update the module docstring to remove the version-specific warning
format example that was inconsistent with the looser filter.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
2026-05-08 14:50:33 +08:00
Willem Jiang
844ad8e528
Merge branch 'main' into release/2.0-rc 2026-04-28 15:44:02 +08:00
DanielWalnut
6bd88fe14c
fix(sandbox): block host bash traversal escapes (#2560)
* fix(sandbox): block host bash traversal escapes

Fixes #2535

* fix(sandbox): harden local bash path guards

* fix(sandbox): avoid bash cd argument false positives

* Fix the lint error

Add function to resolve and validate user data path.

* Fix the lint error

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-04-28 12:18:41 +08:00
DanielWalnut
af8c0cfb78
fix(harness): constrain view_image to thread data paths (#2557)
* fix(harness): constrain view_image to thread data paths

Fixes #2530

* fix(harness): address view_image review findings

* style(harness): format view_image changes

* fix(harness): address view_image review comments
2026-04-28 11:13:17 +08:00
rayhpeng
2e05f380c4 feat(persistence): per-user filesystem isolation, run-scoped APIs, and state/history simplification (#2153)
* feat(persistence): add unified persistence layer with event store, token tracking, and feedback (#1930)

* feat(persistence): add SQLAlchemy 2.0 async ORM scaffold

Introduce a unified database configuration (DatabaseConfig) that
controls both the LangGraph checkpointer and the DeerFlow application
persistence layer from a single `database:` config section.

New modules:
- deerflow.config.database_config — Pydantic config with memory/sqlite/postgres backends
- deerflow.persistence — async engine lifecycle, DeclarativeBase with to_dict mixin, Alembic skeleton
- deerflow.runtime.runs.store — RunStore ABC + MemoryRunStore implementation

Gateway integration initializes/tears down the persistence engine in
the existing langgraph_runtime() context manager. Legacy checkpointer
config is preserved for backward compatibility.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(persistence): add RunEventStore ABC + MemoryRunEventStore

Phase 2-A prerequisite for event storage: adds the unified run event
stream interface (RunEventStore) with an in-memory implementation,
RunEventsConfig, gateway integration, and comprehensive tests (27 cases).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(persistence): add ORM models, repositories, DB/JSONL event stores, RunJournal, and API endpoints

Phase 2-B: run persistence + event storage + token tracking.

- ORM models: RunRow (with token fields), ThreadMetaRow, RunEventRow
- RunRepository implements RunStore ABC via SQLAlchemy ORM
- ThreadMetaRepository with owner access control
- DbRunEventStore with trace content truncation and cursor pagination
- JsonlRunEventStore with per-run files and seq recovery from disk
- RunJournal (BaseCallbackHandler) captures LLM/tool/lifecycle events,
  accumulates token usage by caller type, buffers and flushes to store
- RunManager now accepts optional RunStore for persistent backing
- Worker creates RunJournal, writes human_message, injects callbacks
- Gateway deps use factory functions (RunRepository when DB available)
- New endpoints: messages, run messages, run events, token-usage
- ThreadCreateRequest gains assistant_id field
- 92 tests pass (33 new), zero regressions

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(persistence): add user feedback + follow-up run association

Phase 2-C: feedback and follow-up tracking.

- FeedbackRow ORM model (rating +1/-1, optional message_id, comment)
- FeedbackRepository with CRUD, list_by_run/thread, aggregate stats
- Feedback API endpoints: create, list, stats, delete
- follow_up_to_run_id in RunCreateRequest (explicit or auto-detected
  from latest successful run on the thread)
- Worker writes follow_up_to_run_id into human_message event metadata
- Gateway deps: feedback_repo factory + getter
- 17 new tests (14 FeedbackRepository + 3 follow-up association)
- 109 total tests pass, zero regressions

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* test+config: comprehensive Phase 2 test coverage + deprecate checkpointer config

- config.example.yaml: deprecate standalone checkpointer section, activate
  unified database:sqlite as default (drives both checkpointer + app data)
- New: test_thread_meta_repo.py (14 tests) — full ThreadMetaRepository coverage
  including check_access owner logic, list_by_owner pagination
- Extended test_run_repository.py (+4 tests) — completion preserves fields,
  list ordering desc, limit, owner_none returns all
- Extended test_run_journal.py (+8 tests) — on_chain_error, track_tokens=false,
  middleware no ai_message, unknown caller tokens, convenience fields,
  tool_error, non-summarization custom event
- Extended test_run_event_store.py (+7 tests) — DB batch seq continuity,
  make_run_event_store factory (memory/db/jsonl/fallback/unknown)
- Extended test_phase2b_integration.py (+4 tests) — create_or_reject persists,
  follow-up metadata, summarization in history, full DB-backed lifecycle
- Fixed DB integration test to use proper fake objects (not MagicMock)
  for JSON-serializable metadata
- 157 total Phase 2 tests pass, zero regressions

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* config: move default sqlite_dir to .deer-flow/data

Keep SQLite databases alongside other DeerFlow-managed data
(threads, memory) under the .deer-flow/ directory instead of a
top-level ./data folder.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(persistence): remove UTFJSON, use engine-level json_serializer + datetime.now()

- Replace custom UTFJSON type with standard sqlalchemy.JSON in all ORM
  models. Add json_serializer=json.dumps(ensure_ascii=False) to all
  create_async_engine calls so non-ASCII text (Chinese etc.) is stored
  as-is in both SQLite and Postgres.
- Change ORM datetime defaults from datetime.now(UTC) to datetime.now(),
  remove UTC imports.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(gateway): simplify deps.py with getter factory + inline repos

- Replace 6 identical getter functions with _require() factory.
- Inline 3 _make_*_repo() factories into langgraph_runtime(), call
  get_session_factory() once instead of 3 times.
- Add thread_meta upsert in start_run (services.py).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(docker): add UV_EXTRAS build arg for optional dependencies

Support installing optional dependency groups (e.g. postgres) at
Docker build time via UV_EXTRAS build arg:
  UV_EXTRAS=postgres docker compose build

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(journal): fix flush, token tracking, and consolidate tests

RunJournal fixes:
- _flush_sync: retain events in buffer when no event loop instead of
  dropping them; worker's finally block flushes via async flush().
- on_llm_end: add tool_calls filter and caller=="lead_agent" guard for
  ai_message events; mark message IDs for dedup with record_llm_usage.
- worker.py: persist completion data (tokens, message count) to RunStore
  in finally block.

Model factory:
- Auto-inject stream_usage=True for BaseChatOpenAI subclasses with
  custom api_base, so usage_metadata is populated in streaming responses.

Test consolidation:
- Delete test_phase2b_integration.py (redundant with existing tests).
- Move DB-backed lifecycle test into test_run_journal.py.
- Add tests for stream_usage injection in test_model_factory.py.
- Clean up executor/task_tool dead journal references.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(events): widen content type to str|dict in all store backends

Allow event content to be a dict (for structured OpenAI-format messages)
in addition to plain strings. Dict values are JSON-serialized for the DB
backend and deserialized on read; memory and JSONL backends handle dicts
natively. Trace truncation now serializes dicts to JSON before measuring.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(events): use metadata flag instead of heuristic for dict content detection

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(converters): add LangChain-to-OpenAI message format converters

Pure functions langchain_to_openai_message, langchain_to_openai_completion,
langchain_messages_to_openai, and _infer_finish_reason for converting
LangChain BaseMessage objects to OpenAI Chat Completions format, used by
RunJournal for event storage. 15 unit tests added.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(converters): handle empty list content as null, clean up test

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(events): human_message content uses OpenAI user message format

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(events): ai_message uses OpenAI format, add ai_tool_call message event

- ai_message content now uses {"role": "assistant", "content": "..."} format
- New ai_tool_call message event emitted when lead_agent LLM responds with tool_calls
- ai_tool_call uses langchain_to_openai_message converter for consistent format
- Both events include finish_reason in metadata ("stop" or "tool_calls")

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(events): add tool_result message event with OpenAI tool message format

Cache tool_call_id from on_tool_start keyed by run_id as fallback for on_tool_end,
then emit a tool_result message event (role=tool, tool_call_id, content) after each
successful tool completion.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(events): summary content uses OpenAI system message format

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(events): replace llm_start/llm_end with llm_request/llm_response in OpenAI format

Add on_chat_model_start to capture structured prompt messages as llm_request events.
Replace llm_end trace events with llm_response using OpenAI Chat Completions format.
Track llm_call_index to pair request/response events.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(events): add record_middleware method for middleware trace events

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* test(events): add full run sequence integration test for OpenAI content format

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(events): align message events with checkpoint format and add middleware tag injection

- Message events (ai_message, ai_tool_call, tool_result, human_message) now use
  BaseMessage.model_dump() format, matching LangGraph checkpoint values.messages
- on_tool_end extracts tool_call_id/name/status from ToolMessage objects
- on_tool_error now emits tool_result message events with error status
- record_middleware uses middleware:{tag} event_type and middleware category
- Summarization custom events use middleware:summarize category
- TitleMiddleware injects middleware:title tag via get_config() inheritance
- SummarizationMiddleware model bound with middleware:summarize tag
- Worker writes human_message using HumanMessage.model_dump()

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(threads): switch search endpoint to threads_meta table and sync title

- POST /api/threads/search now queries threads_meta table directly,
  removing the two-phase Store + Checkpointer scan approach
- Add ThreadMetaRepository.search() with metadata/status filters
- Add ThreadMetaRepository.update_display_name() for title sync
- Worker syncs checkpoint title to threads_meta.display_name on run completion
- Map display_name to values.title in search response for API compatibility

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(threads): history endpoint reads messages from event store

- POST /api/threads/{thread_id}/history now combines two data sources:
  checkpointer for checkpoint_id, metadata, title, thread_data;
  event store for messages (complete history, not truncated by summarization)
- Strip internal LangGraph metadata keys from response
- Remove full channel_values serialization in favor of selective fields

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix: remove duplicate optional-dependencies header in pyproject.toml

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(middleware): pass tagged config to TitleMiddleware ainvoke call

Without the config, the middleware:title tag was not injected,
causing the LLM response to be recorded as a lead_agent ai_message
in run_events.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix: resolve merge conflict in .env.example

Keep both DATABASE_URL (from persistence-scaffold) and WECOM
credentials (from main) after the merge.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(persistence): address review feedback on PR #1851

- Fix naive datetime.now() → datetime.now(UTC) in all ORM models
- Fix seq race condition in DbRunEventStore.put() with FOR UPDATE
  and UNIQUE(thread_id, seq) constraint
- Encapsulate _store access in RunManager.update_run_completion()
- Deduplicate _store.put() logic in RunManager via _persist_to_store()
- Add update_run_completion to RunStore ABC + MemoryRunStore
- Wire follow_up_to_run_id through the full create path
- Add error recovery to RunJournal._flush_sync() lost-event scenario
- Add migration note for search_threads breaking change
- Fix test_checkpointer_none_fix mock to set database=None

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* chore: update uv.lock

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(persistence): address 22 review comments from CodeQL, Copilot, and Code Quality

Bug fixes:
- Sanitize log params to prevent log injection (CodeQL)
- Reset threads_meta.status to idle/error when run completes
- Attach messages only to latest checkpoint in /history response
- Write threads_meta on POST /threads so new threads appear in search

Lint fixes:
- Remove unused imports (journal.py, migrations/env.py, test_converters.py)
- Convert lambda to named function (engine.py, Ruff E731)
- Remove unused logger definitions in repos (Ruff F841)
- Add logging to JSONL decode errors and empty except blocks
- Separate assert side-effects in tests (CodeQL)
- Remove unused local variables in tests (Ruff F841)
- Fix max_trace_content truncation to use byte length, not char length

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* style: apply ruff format to persistence and runtime files

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* Potential fix for pull request finding 'Statement has no effect'

Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com>

* refactor(runtime): introduce RunContext to reduce run_agent parameter bloat

Extract checkpointer, store, event_store, run_events_config, thread_meta_repo,
and follow_up_to_run_id into a frozen RunContext dataclass. Add get_run_context()
in deps.py to build the base context from app.state singletons. start_run() uses
dataclasses.replace() to enrich per-run fields before passing ctx to run_agent.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(gateway): move sanitize_log_param to app/gateway/utils.py

Extract the log-injection sanitizer from routers/threads.py into a shared
utils module and rename to sanitize_log_param (public API). Eliminates the
reverse service → router import in services.py.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* perf: use SQL aggregation for feedback stats and thread token usage

Replace Python-side counting in FeedbackRepository.aggregate_by_run with
a single SELECT COUNT/SUM query. Add RunStore.aggregate_tokens_by_thread
abstract method with SQL GROUP BY implementation in RunRepository and
Python fallback in MemoryRunStore. Simplify the thread_token_usage
endpoint to delegate to the new method, eliminating the limit=10000
truncation risk.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* docs: annotate DbRunEventStore.put() as low-frequency path

Add docstring clarifying that put() opens a per-call transaction with
FOR UPDATE and should only be used for infrequent writes (currently
just the initial human_message event). High-throughput callers should
use put_batch() instead.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(threads): fall back to Store search when ThreadMetaRepository is unavailable

When database.backend=memory (default) or no SQL session factory is
configured, search_threads now queries the LangGraph Store instead of
returning 503. Returns empty list if neither Store nor repo is available.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(persistence): introduce ThreadMetaStore ABC for backend-agnostic thread metadata

Add ThreadMetaStore abstract base class with create/get/search/update/delete
interface. ThreadMetaRepository (SQL) now inherits from it. New
MemoryThreadMetaStore wraps LangGraph BaseStore for memory-mode deployments.

deps.py now always provides a non-None thread_meta_repo, eliminating all
`if thread_meta_repo is not None` guards in services.py, worker.py, and
routers/threads.py. search_threads no longer needs a Store fallback branch.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(history): read messages from checkpointer instead of RunEventStore

The /history endpoint now reads messages directly from the
checkpointer's channel_values (the authoritative source) instead of
querying RunEventStore.list_messages(). The RunEventStore API is
preserved for other consumers.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(persistence): address new Copilot review comments

- feedback.py: validate thread_id/run_id before deleting feedback
- jsonl.py: add path traversal protection with ID validation
- run_repo.py: parse `before` to datetime for PostgreSQL compat
- thread_meta_repo.py: fix pagination when metadata filter is active
- database_config.py: use resolve_path for sqlite_dir consistency

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* Implement skill self-evolution and skill_manage flow (#1874)

* chore: ignore .worktrees directory

* Add skill_manage self-evolution flow

* Fix CI regressions for skill_manage

* Address PR review feedback for skill evolution

* fix(skill-evolution): preserve history on delete

* fix(skill-evolution): tighten scanner fallbacks

* docs: add skill_manage e2e evidence screenshot

* fix(skill-manage): avoid blocking fs ops in session runtime

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>

* fix(config): resolve sqlite_dir relative to CWD, not Paths.base_dir

resolve_path() resolves relative to Paths.base_dir (.deer-flow),
which double-nested the path to .deer-flow/.deer-flow/data/app.db.
Use Path.resolve() (CWD-relative) instead.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* Feature/feishu receive file (#1608)

* feat(feishu): add channel file materialization hook for inbound messages

- Introduce Channel.receive_file(msg, thread_id) as a base method for file materialization; default is no-op.
- Implement FeishuChannel.receive_file to download files/images from Feishu messages, save to sandbox, and inject virtual paths into msg.text.
- Update ChannelManager to call receive_file for any channel if msg.files is present, enabling downstream model access to user-uploaded files.
- No impact on Slack/Telegram or other channels (they inherit the default no-op).

* style(backend): format code with ruff for lint compliance

- Auto-formatted packages/harness/deerflow/agents/factory.py and tests/test_create_deerflow_agent.py using `ruff format`
- Ensured both files conform to project linting standards
- Fixes CI lint check failures caused by code style issues

* fix(feishu): handle file write operation asynchronously to prevent blocking

* fix(feishu): rename GetMessageResourceRequest to _GetMessageResourceRequest and remove redundant code

* test(feishu): add tests for receive_file method and placeholder replacement

* fix(manager): remove unnecessary type casting for channel retrieval

* fix(feishu): update logging messages to reflect resource handling instead of image

* fix(feishu): sanitize filename by replacing invalid characters in file uploads

* fix(feishu): improve filename sanitization and reorder image key handling in message processing

* fix(feishu): add thread lock to prevent filename conflicts during file downloads

* fix(test): correct bad merge in test_feishu_parser.py

* chore: run ruff and apply formatting cleanup
fix(feishu): preserve rich-text attachment order and improve fallback filename handling

* fix(docker): restore gateway env vars and fix langgraph empty arg issue (#1915)

Two production docker-compose.yaml bugs prevent `make up` from working:

1. Gateway missing DEER_FLOW_CONFIG_PATH and DEER_FLOW_EXTENSIONS_CONFIG_PATH
   environment overrides. Added in fb2d99f (#1836) but accidentally reverted
   by ca2fb95 (#1847). Without them, gateway reads host paths from .env via
   env_file, causing FileNotFoundError inside the container.

2. Langgraph command fails when LANGGRAPH_ALLOW_BLOCKING is unset (default).
   Empty $${allow_blocking} inserts a bare space between flags, causing
   ' --no-reload' to be parsed as unexpected extra argument. Fix by building
   args string first and conditionally appending --allow-blocking.

Co-authored-by: cooper <cooperfu@tencent.com>

* fix(frontend): resolve invalid HTML nesting and tabnabbing vulnerabilities (#1904)

* fix(frontend): resolve invalid HTML nesting and tabnabbing vulnerabilities

Fix `<button>` inside `<a>` invalid HTML in artifact components and add
missing `noopener,noreferrer` to `window.open` calls to prevent reverse
tabnabbing.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix(frontend): address Copilot review on tabnabbing and double-tab-open

Remove redundant parent onClick on web_fetch ChainOfThoughtStep to
prevent opening two tabs on link click, and explicitly null out
window.opener after window.open() for defensive tabnabbing hardening.

---------

Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>

* refactor(persistence): organize entities into per-entity directories

Restructure the persistence layer from horizontal "models/ + repositories/"
split into vertical entity-aligned directories. Each entity (thread_meta,
run, feedback) now owns its ORM model, abstract interface (where applicable),
and concrete implementations under a single directory with an aggregating
__init__.py for one-line imports.

Layout:
  persistence/thread_meta/{base,model,sql,memory}.py
  persistence/run/{model,sql}.py
  persistence/feedback/{model,sql}.py

models/__init__.py is kept as a facade so Alembic autogenerate continues to
discover all ORM tables via Base.metadata. RunEventRow remains under
models/run_event.py because its storage implementation lives in
runtime/events/store/db.py and has no matching repository directory.

The repositories/ directory is removed entirely. All call sites in
gateway/deps.py and tests are updated to import from the new entity
packages, e.g.:

    from deerflow.persistence.thread_meta import ThreadMetaRepository
    from deerflow.persistence.run import RunRepository
    from deerflow.persistence.feedback import FeedbackRepository

Full test suite passes (1690 passed, 14 skipped).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(gateway): sync thread rename and delete through ThreadMetaStore

The POST /threads/{id}/state endpoint previously synced title changes
only to the LangGraph Store via _store_upsert. In sqlite mode the search
endpoint reads from the ThreadMetaRepository SQL table, so renames never
appeared in /threads/search until the next agent run completed (worker.py
syncs title from checkpoint to thread_meta in its finally block).

Likewise the DELETE /threads/{id} endpoint cleaned up the filesystem,
Store, and checkpointer but left the threads_meta row orphaned in sqlite,
so deleted threads kept appearing in /threads/search.

Fix both endpoints by routing through the ThreadMetaStore abstraction
which already has the correct sqlite/memory implementations wired up by
deps.py. The rename path now calls update_display_name() and the delete
path calls delete() — both work uniformly across backends.

Verified end-to-end with curl in gateway mode against sqlite backend.
Existing test suite (1690 passed) and focused router/repo tests pass.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(gateway): route all thread metadata access through ThreadMetaStore

Following the rename/delete bug fix in PR1, migrate the remaining direct
LangGraph Store reads/writes in the threads router and services to the
ThreadMetaStore abstraction so that the sqlite and memory backends behave
identically and the legacy dual-write paths can be removed.

Migrated endpoints (threads.py):
- create_thread: idempotency check + write now use thread_meta_repo.get/create
  instead of dual-writing the LangGraph Store and the SQL row.
- get_thread: reads from thread_meta_repo.get; the checkpoint-only fallback
  for legacy threads is preserved.
- patch_thread: replaced _store_get/_store_put with thread_meta_repo.update_metadata.
- delete_thread_data: dropped the legacy store.adelete; thread_meta_repo.delete
  already covers it.

Removed dead code (services.py):
- _upsert_thread_in_store — redundant with the immediately following
  thread_meta_repo.create() call.
- _sync_thread_title_after_run — worker.py's finally block already syncs
  the title via thread_meta_repo.update_display_name() after each run.

Removed dead code (threads.py):
- _store_get / _store_put / _store_upsert helpers (no remaining callers).
- THREADS_NS constant.
- get_store import (router no longer touches the LangGraph Store directly).

New abstract method:
- ThreadMetaStore.update_metadata(thread_id, metadata) merges metadata into
  the thread's metadata field. Implemented in both ThreadMetaRepository (SQL,
  read-modify-write inside one session) and MemoryThreadMetaStore. Three new
  unit tests cover merge / empty / nonexistent behaviour.

Net change: -134 lines. Full test suite: 1693 passed, 14 skipped.
Verified end-to-end with curl in gateway mode against sqlite backend
(create / patch / get / rename / search / delete).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com>
Co-authored-by: DanielWalnut <45447813+hetaoBackend@users.noreply.github.com>
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
Co-authored-by: JilongSun <965640067@qq.com>
Co-authored-by: jie <49781832+stan-fu@users.noreply.github.com>
Co-authored-by: cooper <cooperfu@tencent.com>
Co-authored-by: yangzheli <43645580+yangzheli@users.noreply.github.com>

* feat(auth): release-validation pass for 2.0-rc — 12 blockers + simplify follow-ups (#2008)

* feat(auth): introduce backend auth module

Port RFC-001 authentication core from PR #1728:
- JWT token handling (create_access_token, decode_token, TokenPayload)
- Password hashing (bcrypt) with verify_password
- SQLite UserRepository with base interface
- Provider Factory pattern (LocalAuthProvider)
- CLI reset_admin tool
- Auth-specific errors (AuthErrorCode, TokenError, AuthErrorResponse)

Deps:
- bcrypt>=4.0.0
- pyjwt>=2.9.0
- email-validator>=2.0.0
- backend/uv.toml pins public PyPI index

Tests: 12 pure unit tests (test_auth_config.py, test_auth_errors.py).

Scope note: authz.py, test_auth.py, and test_auth_type_system.py are
deferred to commit 2 because they depend on middleware and deps wiring
that is not yet in place. Commit 1 stays "pure new files only" as the
spec mandates.

* feat(auth): wire auth end-to-end (middleware + frontend replacement)

Backend:
- Port auth_middleware, csrf_middleware, langgraph_auth, routers/auth
- Port authz decorator (owner_filter_key defaults to 'owner_id')
- Merge app.py: register AuthMiddleware + CSRFMiddleware + CORS, add
  _ensure_admin_user lifespan hook, _migrate_orphaned_threads helper,
  register auth router
- Merge deps.py: add get_local_provider, get_current_user_from_request,
  get_optional_user_from_request; keep get_current_user as thin str|None
  adapter for feedback router
- langgraph.json: add auth path pointing to langgraph_auth.py:auth
- Rename metadata['user_id'] -> metadata['owner_id'] in langgraph_auth
  (both metadata write and LangGraph filter dict) + test fixtures

Frontend:
- Delete better-auth library and api catch-all route
- Remove better-auth npm dependency and env vars (BETTER_AUTH_SECRET,
  BETTER_AUTH_GITHUB_*) from env.js
- Port frontend/src/core/auth/* (AuthProvider, gateway-config,
  proxy-policy, server-side getServerSideUser, types)
- Port frontend/src/core/api/fetcher.ts
- Port (auth)/layout, (auth)/login, (auth)/setup pages
- Rewrite workspace/layout.tsx as server component that calls
  getServerSideUser and wraps in AuthProvider
- Port workspace/workspace-content.tsx for the client-side sidebar logic

Tests:
- Port 5 auth test files (test_auth, test_auth_middleware,
  test_auth_type_system, test_ensure_admin, test_langgraph_auth)
- 176 auth tests PASS

After this commit: login/logout/registration flow works, but persistence
layer does not yet filter by owner_id. Commit 4 closes that gap.

* feat(auth): account settings page + i18n

- Port account-settings-page.tsx (change password, change email, logout)
- Wire into settings-dialog.tsx as new "account" section with UserIcon,
  rendered first in the section list
- Add i18n keys:
  - en-US/zh-CN: settings.sections.account ("Account" / "账号")
  - en-US/zh-CN: button.logout ("Log out" / "退出登录")
  - types.ts: matching type declarations

* feat(auth): enforce owner_id across 2.0-rc persistence layer

Add request-scoped contextvar-based owner filtering to threads_meta,
runs, run_events, and feedback repositories. Router code is unchanged
— isolation is enforced at the storage layer so that any caller that
forgets to pass owner_id still gets filtered results, and new routes
cannot accidentally leak data.

Core infrastructure
-------------------
- deerflow/runtime/user_context.py (new):
  - ContextVar[CurrentUser | None] with default None
  - runtime_checkable CurrentUser Protocol (structural subtype with .id)
  - set/reset/get/require helpers
  - AUTO sentinel + resolve_owner_id(value, method_name) for sentinel
    three-state resolution: AUTO reads contextvar, explicit str
    overrides, explicit None bypasses the filter (for migration/CLI)

Repository changes
------------------
- ThreadMetaRepository: create/get/search/update_*/delete gain
  owner_id=AUTO kwarg; read paths filter by owner, writes stamp it,
  mutations check ownership before applying
- RunRepository: put/get/list_by_thread/delete gain owner_id=AUTO kwarg
- FeedbackRepository: create/get/list_by_run/list_by_thread/delete
  gain owner_id=AUTO kwarg
- DbRunEventStore: list_messages/list_events/list_messages_by_run/
  count_messages/delete_by_thread/delete_by_run gain owner_id=AUTO
  kwarg. Write paths (put/put_batch) read contextvar softly: when a
  request-scoped user is available, owner_id is stamped; background
  worker writes without a user context pass None which is valid
  (orphan row to be bound by migration)

Schema
------
- persistence/models/run_event.py: RunEventRow.owner_id = Mapped[
  str | None] = mapped_column(String(64), nullable=True, index=True)
- No alembic migration needed: 2.0 ships fresh, Base.metadata.create_all
  picks up the new column automatically

Middleware
----------
- auth_middleware.py: after cookie check, call get_optional_user_from_
  request to load the real User, stamp it into request.state.user AND
  the contextvar via set_current_user, reset in a try/finally. Public
  paths and unauthenticated requests continue without contextvar, and
  @require_auth handles the strict 401 path

Test infrastructure
-------------------
- tests/conftest.py: @pytest.fixture(autouse=True) _auto_user_context
  sets a default SimpleNamespace(id="test-user-autouse") on every test
  unless marked @pytest.mark.no_auto_user. Keeps existing 20+
  persistence tests passing without modification
- pyproject.toml [tool.pytest.ini_options]: register no_auto_user
  marker so pytest does not emit warnings for opt-out tests
- tests/test_user_context.py: 6 tests covering three-state semantics,
  Protocol duck typing, and require/optional APIs
- tests/test_thread_meta_repo.py: one test updated to pass owner_id=
  None explicitly where it was previously relying on the old default

Test results
------------
- test_user_context.py: 6 passed
- test_auth*.py + test_langgraph_auth.py + test_ensure_admin.py: 127
- test_run_event_store / test_run_repository / test_thread_meta_repo
  / test_feedback: 92 passed
- Full backend suite: 1905 passed, 2 failed (both @requires_llm flaky
  integration tests unrelated to auth), 1 skipped

* feat(auth): extend orphan migration to 2.0-rc persistence tables

_ensure_admin_user now runs a three-step pipeline on every boot:

  Step 1 (fatal):     admin user exists / is created / password is reset
  Step 2 (non-fatal): LangGraph store orphan threads → admin
  Step 3 (non-fatal): SQL persistence tables → admin
    - threads_meta
    - runs
    - run_events
    - feedback

Each step is idempotent. The fatal/non-fatal split mirrors PR #1728's
original philosophy: admin creation failure blocks startup (the system
is unusable without an admin), whereas migration failures log a warning
and let the service proceed (a partial migration is recoverable; a
missing admin is not).

Key helpers
-----------
- _iter_store_items(store, namespace, *, page_size=500):
  async generator that cursor-paginates across LangGraph store pages.
  Fixes PR #1728's hardcoded limit=1000 bug that would silently lose
  orphans beyond the first page.

- _migrate_orphaned_threads(store, admin_user_id):
  Rewritten to use _iter_store_items. Returns the migrated count so the
  caller can log it; raises only on unhandled exceptions.

- _migrate_orphan_sql_tables(admin_user_id):
  Imports the 4 ORM models lazily, grabs the shared session factory,
  runs one UPDATE per table in a single transaction, commits once.
  No-op when no persistence backend is configured (in-memory dev).

Tests: test_ensure_admin.py (8 passed)

* test(auth): port AUTH test plan docs + lint/format pass

- Port backend/docs/AUTH_TEST_PLAN.md and AUTH_UPGRADE.md from PR #1728
- Rename metadata.user_id → metadata.owner_id in AUTH_TEST_PLAN.md
  (4 occurrences from the original PR doc)
- ruff auto-fix UP037 in sentinel type annotations: drop quotes around
  "str | None | _AutoSentinel" now that from __future__ import
  annotations makes them implicit string forms
- ruff format: 2 files (app/gateway/app.py, runtime/user_context.py)

Note on test coverage additions:
- conftest.py autouse fixture was already added in commit 4 (had to
  be co-located with the repository changes to keep pre-existing
  persistence tests passing)
- cross-user isolation E2E tests (test_owner_isolation.py) deferred
  — enforcement is already proven by the 98-test repository suite
  via the autouse fixture + explicit _AUTO sentinel exercises
- New test cases (TC-API-17..20, TC-ATK-13, TC-MIG-01..07) listed
  in AUTH_TEST_PLAN.md are deferred to a follow-up PR — they are
  manual-QA test cases rather than pytest code, and the spec-level
  coverage is already met by test_user_context.py + the 98-test
  repository suite.

Final test results:
- Auth suite (test_auth*, test_langgraph_auth, test_ensure_admin,
  test_user_context): 186 passed
- Persistence suite (test_run_event_store, test_run_repository,
  test_thread_meta_repo, test_feedback): 98 passed
- Lint: ruff check + ruff format both clean

* test(auth): add cross-user isolation test suite

10 tests exercising the storage-layer owner filter by manually
switching the user_context contextvar between two users. Verifies
the safety invariant:

  After a repository write with owner_id=A, a subsequent read with
  owner_id=B must not return the row, and vice versa.

Covers all 4 tables that own user-scoped data:

TC-API-17  threads_meta  — read, search, update, delete cross-user
TC-API-18  runs          — get, list_by_thread, delete cross-user
TC-API-19  run_events    — list_messages, list_events, count_messages,
                           delete_by_thread (CRITICAL: raw conversation
                           content leak vector)
TC-API-20  feedback      — get, list_by_run, delete cross-user

Plus two meta-tests verifying the sentinel pattern itself:
- AUTO + unset contextvar raises RuntimeError
- explicit owner_id=None bypasses the filter (migration escape hatch)

Architecture note
-----------------
These tests bypass the HTTP layer by design. The full chain
(cookie → middleware → contextvar → repository) is covered piecewise:

- test_auth_middleware.py: middleware sets contextvar from cookies
- test_owner_isolation.py: repositories enforce isolation when
  contextvar is set to different users

Together they prove the end-to-end safety property without the
ceremony of spinning up a full TestClient + in-memory DB for every
router endpoint.

Tests pass: 231 (full auth + persistence + isolation suite)
Lint: clean

* refactor(auth): migrate user repository to SQLAlchemy ORM

Move the users table into the shared persistence engine so auth
matches the pattern of threads_meta, runs, run_events, and feedback —
one engine, one session factory, one schema init codepath.

New files
---------
- persistence/user/__init__.py, persistence/user/model.py: UserRow
  ORM class with partial unique index on (oauth_provider, oauth_id)
- Registered in persistence/models/__init__.py so
  Base.metadata.create_all() picks it up

Modified
--------
- auth/repositories/sqlite.py: rewritten as async SQLAlchemy,
  identical constructor pattern to the other four repositories
  (def __init__(self, session_factory) + self._sf = session_factory)
- auth/config.py: drop users_db_path field — storage is configured
  through config.database like every other table
- deps.py/get_local_provider: construct SQLiteUserRepository with
  the shared session factory, fail fast if engine is not initialised
- tests/test_auth.py: rewrite test_sqlite_round_trip_new_fields to
  use the shared engine (init_engine + close_engine in a tempdir)
- tests/test_auth_type_system.py: add per-test autouse fixture that
  spins up a scratch engine and resets deps._cached_* singletons

* refactor(auth): remove SQL orphan migration (unused in supported scenarios)

The _migrate_orphan_sql_tables helper existed to bind NULL owner_id
rows in threads_meta, runs, run_events, and feedback to the admin on
first boot. But in every supported upgrade path, it's a no-op:

  1. Fresh install: create_all builds fresh tables, no legacy rows
  2. No-auth → with-auth (no existing persistence DB): persistence
     tables are created fresh by create_all, no legacy rows
  3. No-auth → with-auth (has existing persistence DB from #1930):
     NOT a supported upgrade path — "有 DB 到有 DB" schema evolution
     is out of scope; users wipe DB or run manual ALTER

So the SQL orphan migration never has anything to do in the
supported matrix. Delete the function, simplify _ensure_admin_user
from a 3-step pipeline to a 2-step one (admin creation + LangGraph
store orphan migration only).

LangGraph store orphan migration stays: it serves the real
"no-auth → with-auth" upgrade path where a user's existing LangGraph
thread metadata has no owner_id field and needs to be stamped with
the newly-created admin's id.

Tests: 284 passed (auth + persistence + isolation)
Lint: clean

* security(auth): write initial admin password to 0600 file instead of logs

CodeQL py/clear-text-logging-sensitive-data flagged 3 call sites that
logged the auto-generated admin password to stdout via logger.info().
Production log aggregators (ELK/Splunk/etc) would have captured those
cleartext secrets. Replace with a shared helper that writes to
.deer-flow/admin_initial_credentials.txt with mode 0600, and log only
the path.

New file
--------
- app/gateway/auth/credential_file.py: write_initial_credentials()
  helper. Takes email, password, and a "initial"/"reset" label.
  Creates .deer-flow/ if missing, writes a header comment plus the
  email+password, chmods 0o600, returns the absolute Path.

Modified
--------
- app/gateway/app.py: both _ensure_admin_user paths (fresh creation
  + needs_setup password reset) now write to file and log the path
- app/gateway/auth/reset_admin.py: rewritten to use the shared ORM
  repo (SQLiteUserRepository with session_factory) and the
  credential_file helper. The previous implementation was broken
  after the earlier ORM refactor — it still imported _get_users_conn
  and constructed SQLiteUserRepository() without a session factory.

No tests changed — the three password-log sites are all exercised
via existing test_ensure_admin.py which checks that startup
succeeds, not that a specific string appears in logs.

CodeQL alerts 272, 283, 284: all resolved.

* security(auth): strict JWT validation in middleware (fix junk cookie bypass)

AUTH_TEST_PLAN test 7.5.8 expects junk cookies to be rejected with
401. The previous middleware behaviour was "presence-only": check
that some access_token cookie exists, then pass through. In
combination with my Task-12 decision to skip @require_auth
decorators on routes, this created a gap where a request with any
cookie-shaped string (e.g. access_token=not-a-jwt) would bypass
authentication on routes that do not touch the repository
(/api/models, /api/mcp/config, /api/memory, /api/skills, …).

Fix: middleware now calls get_current_user_from_request() strictly
and catches the resulting HTTPException to render a 401 with the
proper fine-grained error code (token_invalid, token_expired,
user_not_found, …). On success it stamps request.state.user and
the contextvar so repository-layer owner filters work downstream.

The 4 old "_with_cookie_passes" tests in test_auth_middleware.py
were written for the presence-only behaviour; they asserted that
a junk cookie would make the handler return 200. They are renamed
to "_with_junk_cookie_rejected" and their assertions flipped to
401. The negative path (no cookie → 401 not_authenticated)
is unchanged.

Verified:
  no cookie       → 401 not_authenticated
  junk cookie     → 401 token_invalid     (the fixed bug)
  expired cookie  → 401 token_expired

Tests: 284 passed (auth + persistence + isolation)
Lint: clean

* security(auth): wire @require_permission(owner_check=True) on isolation routes

Apply the require_permission decorator to all 28 routes that take a
{thread_id} path parameter. Combined with the strict middleware
(previous commit), this gives the double-layer protection that
AUTH_TEST_PLAN test 7.5.9 documents:

  Layer 1 (AuthMiddleware): cookie + JWT validation, rejects junk
                            cookies and stamps request.state.user
  Layer 2 (@require_permission with owner_check=True): per-resource
                            ownership verification via
                            ThreadMetaStore.check_access — returns
                            404 if a different user owns the thread

The decorator's owner_check branch is rewritten to use the SQL
thread_meta_repo (the 2.0-rc persistence layer) instead of the
LangGraph store path that PR #1728 used (_store_get / get_store
in routers/threads.py). The inject_record convenience is dropped
— no caller in 2.0 needs the LangGraph blob, and the SQL repo has
a different shape.

Routes decorated (28 total):
- threads.py: delete, patch, get, get-state, post-state, post-history
- thread_runs.py: post-runs, post-runs-stream, post-runs-wait,
  list_runs, get_run, cancel_run, join_run, stream_existing_run,
  list_thread_messages, list_run_messages, list_run_events,
  thread_token_usage
- feedback.py: create, list, stats, delete
- uploads.py: upload (added Request param), list, delete
- artifacts.py: get_artifact
- suggestions.py: generate (renamed body parameter to avoid
  conflict with FastAPI Request)

Test fixes:
- test_suggestions_router.py: bypass the decorator via __wrapped__
  (the unit tests cover parsing logic, not auth — no point spinning
  up a thread_meta_repo just to test JSON unwrapping)
- test_auth_middleware.py 4 fake-cookie tests: already updated in
  the previous commit (745bf432)

Tests: 293 passed (auth + persistence + isolation + suggestions)
Lint: clean

* security(auth): defense-in-depth fixes from release validation pass

Eight findings caught while running the AUTH_TEST_PLAN end-to-end against
the deployed sg_dev stack. Each is a pre-condition for shipping
release/2.0-rc that the previous PRs missed.

Backend hardening
- routers/auth.py: rate limiter X-Real-IP now requires AUTH_TRUSTED_PROXIES
  whitelist (CIDR/IP allowlist). Without nginx in front, the previous code
  honored arbitrary X-Real-IP, letting an attacker rotate the header to
  fully bypass the per-IP login lockout.
- routers/auth.py: 36-entry common-password blocklist via Pydantic
  field_validator on RegisterRequest + ChangePasswordRequest. The shared
  _validate_strong_password helper keeps the constraint in one place.
- routers/threads.py: ThreadCreateRequest + ThreadPatchRequest strip
  server-reserved metadata keys (owner_id, user_id) via Pydantic
  field_validator so a forged value can never round-trip back to other
  clients reading the same thread. The actual ownership invariant stays
  on the threads_meta row; this closes the metadata-blob echo gap.
- authz.py + thread_meta/sql.py: require_permission gains a require_existing
  flag plumbed through check_access(require_existing=True). Destructive
  routes (DELETE/PATCH/state-update/runs/feedback) now treat a missing
  thread_meta row as 404 instead of "untracked legacy thread, allow",
  closing the cross-user delete-idempotence gap where any user could
  successfully DELETE another user's deleted thread.
- repositories/sqlite.py + base.py: update_user raises UserNotFoundError
  on a vanished row instead of silently returning the input. Concurrent
  delete during password reset can no longer look like a successful update.
- runtime/user_context.py: resolve_owner_id() coerces User.id (UUID) to
  str at the contextvar boundary so SQLAlchemy String(64) columns can
  bind it. The whole 2.0-rc isolation pipeline was previously broken
  end-to-end (POST /api/threads → 500 "type 'UUID' is not supported").
- persistence/engine.py: SQLAlchemy listener enables PRAGMA journal_mode=WAL,
  synchronous=NORMAL, foreign_keys=ON on every new SQLite connection.
  TC-UPG-06 in the test plan expects WAL; previous code shipped with the
  default 'delete' journal.
- auth_middleware.py: stamp request.state.auth = AuthContext(...) so
  @require_permission's short-circuit fires; previously every isolation
  request did a duplicate JWT decode + users SELECT. Also unifies the
  401 payload through AuthErrorResponse(...).model_dump().
- app.py: _ensure_admin_user restructure removes the noqa F821 scoping
  bug where 'password' was referenced outside the branch that defined it.
  New _announce_credentials helper absorbs the duplicate log block in
  the fresh-admin and reset-admin branches.

* fix(frontend+nginx): rollout CSRF on every state-changing client path

The frontend was 100% broken in gateway-pro mode for any user trying to
open a specific chat thread. Three cumulative bugs each silently
masked the next.

LangGraph SDK CSRF gap (api-client.ts)
- The Client constructor took only apiUrl, no defaultHeaders, no fetch
  interceptor. The SDK's internal fetch never sent X-CSRF-Token, so
  every state-changing /api/langgraph-compat/* call (runs/stream,
  threads/search, threads/{tid}/history, ...) hit CSRFMiddleware and
  got 403 before reaching the auth check. UI symptom: empty thread page
  with no error message; the SPA's hooks swallowed the rejection.
- Fix: pass an onRequest hook that injects X-CSRF-Token from the
  csrf_token cookie per request. Reading the cookie per call (not at
  construction time) handles login / logout / password-change cookie
  rotation transparently. The SDK's prepareFetchOptions calls
  onRequest for both regular requests AND streaming/SSE/reconnect, so
  the same hook covers runs.stream and runs.joinStream.

Raw fetch CSRF gap (7 files)
- Audit: 11 frontend fetch sites, only 2 included CSRF (login/setup +
  account-settings change-password). The other 7 routed through raw
  fetch() with no header — suggestions, memory, agents, mcp, skills,
  uploads, and the local thread cleanup hook all 403'd silently.
- Fix: enhance fetcher.ts:fetchWithAuth to auto-inject X-CSRF-Token on
  POST/PUT/DELETE/PATCH from a single shared readCsrfCookie() helper.
  Convert all 7 raw fetch() callers to fetchWithAuth so the contract
  is centrally enforced. api-client.ts and fetcher.ts share
  readCsrfCookie + STATE_CHANGING_METHODS to avoid drift.

nginx routing + buffering (nginx.local.conf)
- The auth feature shipped without updating the nginx config: per-API
  explicit location blocks but no /api/v1/auth/, /api/feedback, /api/runs.
  The frontend's client-side fetches to /api/v1/auth/login/local 404'd
  from the Next.js side because nginx routed /api/* to the frontend.
- Fix: add catch-all `location /api/` that proxies to the gateway.
  nginx longest-prefix matching keeps the explicit blocks (/api/models,
  /api/threads regex, /api/langgraph/, ...) winning for their paths.
- Fix: disable proxy_buffering + proxy_request_buffering for the
  frontend `location /` block. Without it, nginx tries to spool large
  Next.js chunks into /var/lib/nginx/proxy (root-owned) and fails with
  Permission denied → ERR_INCOMPLETE_CHUNKED_ENCODING → ChunkLoadError.

* test(auth): release-validation test infra and new coverage

Test fixtures and unit tests added during the validation pass.

Router test helpers (NEW: tests/_router_auth_helpers.py)
- make_authed_test_app(): builds a FastAPI test app with a stub
  middleware that stamps request.state.user + request.state.auth and a
  permissive thread_meta_repo mock. TestClient-based router tests
  (test_artifacts_router, test_threads_router) use it instead of bare
  FastAPI() so the new @require_permission(owner_check=True) decorators
  short-circuit cleanly.
- call_unwrapped(): walks the __wrapped__ chain to invoke the underlying
  handler without going through the authz wrappers. Direct-call tests
  (test_uploads_router) use it. Typed with ParamSpec so the wrapped
  signature flows through.

Backend test additions
- test_auth.py: 7 tests for the new _get_client_ip trust model (no
  proxy / trusted proxy / untrusted peer / XFF rejection / invalid
  CIDR / no client). 5 tests for the password blocklist (literal,
  case-insensitive, strong password accepted, change-password binding,
  short-password length-check still fires before blocklist).
  test_update_user_raises_when_row_concurrently_deleted: closes a
  shipped-without-coverage gap on the new UserNotFoundError contract.
- test_thread_meta_repo.py: 4 tests for check_access(require_existing=True)
  — strict missing-row denial, strict owner match, strict owner mismatch,
  strict null-owner still allowed (shared rows survive the tightening).
- test_ensure_admin.py: 3 tests for _migrate_orphaned_threads /
  _iter_store_items pagination, covering the TC-UPG-02 upgrade story
  end-to-end via mock store. Closes the gap where the cursor pagination
  was untested even though the previous PR rewrote it.
- test_threads_router.py: 5 tests for _strip_reserved_metadata
  (owner_id removal, user_id removal, safe-keys passthrough, empty
  input, both-stripped).
- test_auth_type_system.py: replace "password123" fixtures with
  Tr0ub4dor3a / AnotherStr0ngPwd! so the new password blocklist
  doesn't reject the test data.

* docs(auth): refresh TC-DOCKER-05 + document Docker validation gap

- AUTH_TEST_PLAN.md TC-DOCKER-05: the previous expectation
  ("admin password visible in docker logs") was stale after the simplify
  pass that moved credentials to a 0600 file. The grep "Password:" check
  would have silently failed and given a false sense of coverage. New
  expectation matches the actual file-based path: 0600 file in
  DEER_FLOW_HOME, log shows the path (not the secret), reverse-grep
  asserts no leaked password in container logs.
- NEW: docs/AUTH_TEST_DOCKER_GAP.md documents the only un-executed
  block in the test plan (TC-DOCKER-01..06). Reason: sg_dev validation
  host has no Docker daemon installed. The doc maps each Docker case
  to an already-validated bare-metal equivalent (TC-1.1, TC-REENT-01,
  TC-API-02 etc.) so the gap is auditable, and includes pre-flight
  reproduction steps for whoever has Docker available.

---------

Co-authored-by: greatmengqi <chenmengqi.0376@bytedance.com>

* refactor(persistence): unify SQLite to single deerflow.db and move checkpointer to runtime

Merge checkpoints.db and app.db into a single deerflow.db file (WAL mode
handles concurrent access safely). Move checkpointer module from
agents/checkpointer to runtime/checkpointer to better reflect its role
as a runtime infrastructure concern.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(persistence): rename owner_id to user_id and thread_meta_repo to thread_store

Rename owner_id to user_id across all persistence models, repositories,
stores, routers, and tests for clearer semantics. Rename thread_meta_repo
to thread_store for consistency with run_store/run_event_store naming.
Add ThreadMetaStore return type annotation to get_thread_store().

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(persistence): unify ThreadMetaStore interface with user isolation and factory

Add user_id parameter to all ThreadMetaStore abstract methods. Implement
owner isolation in MemoryThreadMetaStore with _get_owned_record helper.
Add check_access to base class and memory implementation. Add
make_thread_store factory to simplify deps.py initialization. Add
memory-backend isolation tests.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(feedback): add UNIQUE(thread_id, run_id, user_id) constraint

Add UNIQUE constraint to FeedbackRow to enforce one feedback per user per run,
enabling upsert behavior in Task 2. Update tests to use distinct user_ids for
multiple feedback records per run, and pass user_id=None to list_by_run for
admin-style queries that bypass user isolation.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(feedback): add upsert() method with UNIQUE enforcement

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(feedback): add delete_by_run() and list_by_thread_grouped()

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(feedback): add PUT upsert and DELETE-by-run endpoints

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(feedback): enrich messages endpoint with per-run feedback data

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(feedback): add frontend feedback API client

Adds upsertFeedback and deleteFeedback API functions backed by
fetchWithAuth, targeting the /api/threads/{id}/runs/{id}/feedback
endpoint.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(feedback): wire feedback data into message rendering for history echo

Adds useThreadFeedback hook that fetches run-level feedback from the
messages API and builds a runId->FeedbackData map. MessageList now calls
this hook and passes feedback and runId to each MessageListItem so
previously-submitted thumbs are pre-filled when revisiting a thread.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(feedback): correct run_id mapping for feedback echo

The feedbackMap was keyed by run_id but looked up by LangGraph message ID.
Fixed by tracking AI message ordinal index to correlate event store
run_ids with LangGraph SDK messages.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(feedback): use real threadId and refresh after stream

- Pass threadId prop to MessageListItem instead of reading "new" from URL params
- Invalidate thread-feedback query on stream finish so buttons appear immediately
- Show feedback buttons always visible, copy button on hover only

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* style(feedback): group copy and feedback buttons together on the left

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* style(feedback): always show toolbar buttons without hover

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(persistence): stream hang when run_events.backend=db

DbRunEventStore._user_id_from_context() returned user.id without
coercing it to str. User.id is a Pydantic UUID, and aiosqlite cannot
bind a raw UUID object to a VARCHAR column, so the INSERT for the
initial human_message event silently rolled back and raised out of
the worker task. Because that put() sat outside the worker's try
block, the finally-clause that publishes end-of-stream never ran
and the SSE stream hung forever.

jsonl mode was unaffected because json.dumps(default=str) coerces
UUID objects transparently.

Fixes:
- db.py: coerce user.id to str at the context-read boundary (matches
  what resolve_user_id already does for the other repositories)
- worker.py: move RunJournal init + human_message put inside the try
  block so any failure flows through the finally/publish_end path
  instead of hanging the subscriber

Defense-in-depth:
- engine.py: add PRAGMA busy_timeout=5000 so checkpointer and event
  store wait for each other on the shared deerflow.db file instead
  of failing immediately under write-lock contention
- journal.py: skip fire-and-forget _flush_sync when a previous flush
  task is still in flight, to avoid piling up concurrent put_batch
  writes on the same SQLAlchemy engine during streaming; flush() now
  waits for pending tasks before draining the buffer
- database_config.py: doc-only update clarifying WAL + busy_timeout
  keep the unified deerflow.db safe for both workloads

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* chore(persistence): drop redundant busy_timeout PRAGMA

Python's sqlite3 driver defaults to a 5-second busy timeout via the
``timeout`` kwarg of ``sqlite3.connect``, and aiosqlite + SQLAlchemy's
aiosqlite dialect inherit that default. Setting ``PRAGMA busy_timeout=5000``
explicitly was a no-op — verified by reading back the PRAGMA on a fresh
connection (it already reports 5000ms without our PRAGMA).

Concurrent stress test (50 checkpoint writes + 20 event batches + 50
thread_meta updates on the same deerflow.db) still completes with zero
errors and 200/200 rows after removing the explicit PRAGMA.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(journal): unwrap Command tool results in on_tool_end

Tools that update graph state (e.g. ``present_files``) return
``Command(update={'messages': [ToolMessage(...)], 'artifacts': [...]})``.
LangGraph later unwraps the inner ``ToolMessage`` into checkpoint state,
but ``RunJournal.on_tool_end`` was receiving the ``Command`` object
directly via the LangChain callback chain and storing
``str(Command(update={...}))`` as the tool_result content.

This produced a visible divergence between the event-store and the
checkpoint for any thread that used a Command-returning tool, blocking
the event-store-backed history fix in the follow-up commit. Concrete
example from thread ``6d30913e-dcd4-41c8-8941-f66c716cf359`` (seq=48):
checkpoint had ``'Successfully presented files'`` while event_store
stored the full Command repr.

The fix detects ``Command`` in ``on_tool_end``, extracts the first
``ToolMessage`` from ``update['messages']``, and lets the existing
ToolMessage branch handle the ``model_dump()`` path. Legacy rows still
containing the Command repr are separately cleaned up by the history
helper in the follow-up commit.

Tests:
- ``test_tool_end_unwraps_command_with_inner_tool_message`` — unit test
  of the unwrap branch with a constructed Command
- ``test_tool_invoke_end_to_end_unwraps_command`` — end-to-end via
  ``CallbackManager`` + ``tool.invoke`` to exercise the real LangChain
  dispatch path that production uses, matching the repro shape from
  ``present_files``
- Counter-proof: temporarily reverted the patch, both tests failed with
  the exact ``Command(update={...})`` repr that was stored in the
  production SQLite row at seq=48, confirming LangChain does pass the
  ``Command`` through callbacks (the unwrap is load-bearing)

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(threads): load history messages from event store, immune to summarize

``get_thread_history`` and ``get_thread_state`` in Gateway mode read
messages from ``checkpoint.channel_values["messages"]``. After
SummarizationMiddleware runs mid-run, that list is rewritten in-place:
pre-summarize messages are dropped and a synthetic summary-as-human
message takes position 0. The frontend then renders a chat history that
starts with ``"Here is a summary of the conversation to date:..."``
instead of the user's original query, and all earlier turns are gone.

The event store (``RunEventStore``) is append-only and never rewritten,
so it retains the full transcript. This commit adds a helper
``_get_event_store_messages`` that loads the event store's message
stream and overrides ``values["messages"]`` in both endpoints; the
checkpoint fallback kicks in only when the event store is unavailable.

Behavior contract of the helper:

- **Full pagination.** ``list_messages`` returns the newest ``limit``
  records when no cursor is given, so a fixed limit silently drops
  older messages on long threads. The helper sizes the read from
  ``count_messages()`` and pages forward with ``after_seq`` cursors.
- **Copy-on-read.** Each content dict is copied before ``id`` is
  patched so the live store object (``MemoryRunEventStore`` returns
  references) is never mutated.
- **Stable ids.** Messages with ``id=None`` (human + tool_result,
  which don't receive an id until checkpoint persistence) get a
  deterministic ``uuid5(NAMESPACE_URL, f"{thread_id}:{seq}")`` so
  React keys stay stable across requests. AI messages keep their
  LLM-assigned ``lc_run--*`` ids.
- **Legacy ``Command`` repr sanitization.** Rows captured before the
  ``journal.py`` ``on_tool_end`` fix (previous commit) stored
  ``str(Command(update={'messages': [ToolMessage(content='X', ...)]}))``
  as the tool_result content. ``_sanitize_legacy_command_repr``
  regex-extracts the inner text so old threads render cleanly.
- **Inline feedback.** When loading the stream, the helper also pulls
  ``feedback_repo.list_by_thread_grouped`` and attaches ``run_id`` to
  every message plus ``feedback`` to the final ``ai_message`` of each
  run. This removes the frontend's need to fetch a second endpoint
  and positional-index-map its way back to the right run. When the
  feedback subsystem is unavailable, the ``feedback`` field is left
  absent entirely so the frontend hides the button rather than
  rendering it over a broken write path.
- **User context.** ``DbRunEventStore`` is user-scoped by default via
  ``resolve_user_id(AUTO)``. The helper relies on the ``@require_permission``
  decorator having populated the user contextvar on both callers; the
  docstring documents this dependency explicitly so nobody wires it
  into a CLI or migration script without passing ``user_id=None``.

Real data verification against thread
``6d30913e-dcd4-41c8-8941-f66c716cf359``: checkpoint showed 12 messages
(summarize-corrupted), event store had 16. The original human message
``"最新伊美局势"`` was preserved as seq=1 in the event store and
correctly restored to position 0 in the helper output. Helper output
for AI messages was byte-identical to checkpoint for every overlapping
message; only tool_result ids differed (patched to uuid5) and the
legacy Command repr at seq=48 was sanitized.

Tests:
- ``test_thread_state_event_store.py`` — 18 tests covering
  ``_sanitize_legacy_command_repr`` (passthrough, single/double-quote
  extraction, unparseable fallback), helper happy path (all message
  types, stable uuid5, store non-mutation), multi-page pagination,
  summarize regression (recovers pre-summarize messages), feedback
  attachment (per-run, multi-run threads, repo failure graceful),
  and dependency failure fallback to ``None``.

Docs:
- ``docs/superpowers/plans/2026-04-10-event-store-history.md`` — the
  implementation plan this commit realizes, with Task 1 revised after
  the evaluation findings (pagination, copy-on-read, Command wrap
  already landed in journal.py, frontend feedback pagination in the
  follow-up commit, Standard-mode follow-up noted).
- ``docs/superpowers/specs/2026-04-11-runjournal-history-evaluation.md``
  — the Claude + second-opinion evaluation document that drove the
  plan revisions (pagination bug, dict-mutation bug, feedback hidden
  bug, Command bug).
- ``docs/superpowers/specs/2026-04-11-summarize-marker-design.md`` —
  design for a follow-up PR that visually marks summarize events in
  history, based on a verified ``adispatch_custom_event`` experiment
  (``trace=False`` middleware nodes can still forward the Pregel task
  config via explicit signature injection).

Scope: Gateway mode only (``make dev-pro``). Standard mode
(``make dev``) hits LangGraph Server directly and bypasses these
endpoints; the summarize symptom is still present there and is
tracked as a separate follow-up in the plan.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(feedback): inline feedback on history and drop positional mapping

The old ``useThreadFeedback`` hook loaded ``GET /api/threads/{id}/messages?limit=200``
and built two parallel lookup tables: ``runIdByAiIndex`` (an ordinal array of
run_ids for every ``ai_message``-typed event) and ``feedbackByRunId``. The render
loop in ``message-list.tsx`` walked the AI messages in order, incrementing
``aiMessageIndex`` on each non-human message, and used that ordinal to look up
the run_id and feedback.

This shape had three latent bugs we could observe on real threads:

1. **Fetch was capped at 200 messages.** Long or tool-heavy threads silently
   dropped earlier entries from the map, so feedback buttons could be missing
   on messages they should own.
2. **Ordinal mismatch.** The render loop counted every non-human message
   (including each intermediate ``ai_tool_call``), but ``runIdByAiIndex`` only
   pushed entries for ``event_type == "ai_message"``. A run with 3 tool_calls
   + 1 final AI message would push 1 entry while the render consumed 4
   positions, so buttons mapped to the wrong positions across multi-run
   threads.
3. **Two parallel data paths.** The ``/history`` render path and the
   ``/messages`` feedback-lookup path could drift in-between an
   ``invalidateQueries`` call and the next refetch, producing transient
   mismaps.

The previous commit moved the authoritative message source for history to
the event store and added ``run_id`` + ``feedback`` inline on each message
dict returned by ``_get_event_store_messages``. This commit aligns the
frontend with that contract:

- **Delete** ``useThreadFeedback``, ``ThreadFeedbackData``,
  ``runIdByAiIndex``, ``feedbackByRunId``, and ``fetchAllThreadMessages``.
- **Introduce** ``useThreadMessageEnrichment`` that fetches
  ``POST /history?limit=1`` once, indexes the returned messages by
  ``message.id`` into a ``Map<id, {run_id, feedback?}>``, and invalidates
  on stream completion (``onFinish`` in ``useThreadStream``). Keying by
  ``message.id`` is stable across runs, tool_call chains, and summarize.
- **Simplify** ``message-list.tsx`` to drop the ``aiMessageIndex``
  counter and read ``enrichment?.get(msg.id)`` at each render step.
- **Rewire** ``message-list-item.tsx`` so the feedback button renders
  when ``feedback !== undefined`` rather than when the message happens
  to be non-human. ``feedback`` is ``undefined`` for non-eligible
  messages (humans, non-final AI, tools), ``null`` for the final
  ai_message of an unrated run, and a ``FeedbackData`` object once
  rated — cleanly distinguishing "not eligible" from "eligible but
  unrated".

``/api/threads/{id}/messages`` is kept as a debug/export surface; no
frontend code calls it anymore but the backend router is untouched.

Validation:
- ``pnpm check`` clean (0 errors, 1 pre-existing unrelated warning)
- Live test on thread ``3d5dea4a`` after gateway restart confirmed the
  original user query is restored to position 0 and the feedback
  button behaves correctly on the final AI message.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(rebase): remove duplicate definitions and update stale module paths

Rebase left duplicate function blocks in worker.py (triple human_message
write causing 3x user messages in /history), deps.py, and prompt.py.
Also update checkpointer imports from the old deerflow.agents.checkpointer
path to deerflow.runtime.checkpointer, and clean up orphaned feedback
props in the frontend message components.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(rebase): restore FeedbackButtons component and enrichment lost during rebase

The FeedbackButtons component (defined inline in message-list-item.tsx)
was introduced in commit 95df8d13 but lost during rebase. The previous
rebase cleanup commit incorrectly removed the feedback/runId props and
enrichment hook as "orphaned code" instead of restoring the missing
component. This commit restores:

- FeedbackButtons component with thumbs up/down toggle and optimistic state
- FeedbackData/upsertFeedback/deleteFeedback imports
- feedback and runId props on MessageListItem
- useThreadMessageEnrichment hook and entry lookup in message-list.tsx

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(user-context): add DEFAULT_USER_ID and get_effective_user_id helper

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(paths): add user-aware path methods with optional user_id parameter

Add _validate_user_id(), user_dir(), user_memory_file(), user_agent_memory_file()
and optional keyword-only user_id parameter to all thread-related path methods.
When user_id is provided, paths resolve under users/{user_id}/threads/{thread_id}/;
when omitted, legacy layout is preserved for backward compatibility.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(memory): add user_id to MemoryStorage interface for per-user isolation

Thread user_id through MemoryStorage.load/reload/save abstract methods and
FileMemoryStorage, re-keying the in-memory cache from bare agent_name to a
(user_id, agent_name) tuple to prevent cross-user cache collisions.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(memory): thread user_id through memory updater layer

Add `user_id` keyword-only parameter to all public updater functions
(_save_memory_to_file, get_memory_data, reload_memory_data, import_memory_data,
clear_memory_data, create/delete/update_memory_fact) and regular keyword param
to MemoryUpdater.update_memory + update_memory_from_conversation, propagating
it to every storage load/save/reload call.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(memory): capture user_id at enqueue time for async-safe thread isolation

Add user_id field to ConversationContext and MemoryUpdateQueue.add() so the
user identity is stored explicitly at request time, before threading.Timer
fires on a different thread where ContextVar values do not propagate.
MemoryMiddleware.after_agent() now calls get_effective_user_id() at enqueue
time and passes the value through to updater.update_memory().

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(isolation): wire user_id through all Paths and memory callsites

Pass user_id=get_effective_user_id() at every callsite that invokes
Paths methods or memory functions, enabling per-user filesystem isolation
throughout the harness and app layers.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(migration): add idempotent script for per-user data migration

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* docs: update CLAUDE.md and config docs for per-user isolation

* feat(events): add pagination to list_messages_by_run on all store backends

Replicates the existing before_seq/after_seq/limit cursor-pagination pattern
from list_messages onto list_messages_by_run across the abstract interface,
MemoryRunEventStore, JsonlRunEventStore, and DbRunEventStore.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(api): add GET /api/runs/{run_id}/messages with cursor pagination

New endpoint resolves thread_id from the run record and delegates to
RunEventStore.list_messages_by_run for cursor-based pagination.
Ownership is enforced implicitly via RunStore.get() user filtering.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(api): add GET /api/runs/{run_id}/feedback

Delegates to FeedbackRepository.list_by_run via the existing _resolve_run
helper; includes tests for success, 404, empty list, and 503 (no DB).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(api): retrofit cursor pagination onto GET /threads/{tid}/runs/{rid}/messages

Replace bare list[dict] response with {data: [...], has_more: bool} envelope,
forwarding limit/before_seq/after_seq query params to the event store.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* docs: add run-level API endpoints to CLAUDE.md routers table

* refactor(threads): remove event-store message loader and feedback from state/history endpoints

State and history endpoints now return messages purely from the
checkpointer's channel_values. The _get_event_store_messages helper
(which loaded the full event-store transcript with feedback attached)
is removed along with its tests. Frontend will use the dedicated
GET /api/runs/{run_id}/messages and /feedback endpoints instead.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(persistence): add unified persistence layer with event store, token tracking, and feedback (#1930)

* feat(persistence): add SQLAlchemy 2.0 async ORM scaffold

Introduce a unified database configuration (DatabaseConfig) that
controls both the LangGraph checkpointer and the DeerFlow application
persistence layer from a single `database:` config section.

New modules:
- deerflow.config.database_config — Pydantic config with memory/sqlite/postgres backends
- deerflow.persistence — async engine lifecycle, DeclarativeBase with to_dict mixin, Alembic skeleton
- deerflow.runtime.runs.store — RunStore ABC + MemoryRunStore implementation

Gateway integration initializes/tears down the persistence engine in
the existing langgraph_runtime() context manager. Legacy checkpointer
config is preserved for backward compatibility.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(persistence): add RunEventStore ABC + MemoryRunEventStore

Phase 2-A prerequisite for event storage: adds the unified run event
stream interface (RunEventStore) with an in-memory implementation,
RunEventsConfig, gateway integration, and comprehensive tests (27 cases).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(persistence): add ORM models, repositories, DB/JSONL event stores, RunJournal, and API endpoints

Phase 2-B: run persistence + event storage + token tracking.

- ORM models: RunRow (with token fields), ThreadMetaRow, RunEventRow
- RunRepository implements RunStore ABC via SQLAlchemy ORM
- ThreadMetaRepository with owner access control
- DbRunEventStore with trace content truncation and cursor pagination
- JsonlRunEventStore with per-run files and seq recovery from disk
- RunJournal (BaseCallbackHandler) captures LLM/tool/lifecycle events,
  accumulates token usage by caller type, buffers and flushes to store
- RunManager now accepts optional RunStore for persistent backing
- Worker creates RunJournal, writes human_message, injects callbacks
- Gateway deps use factory functions (RunRepository when DB available)
- New endpoints: messages, run messages, run events, token-usage
- ThreadCreateRequest gains assistant_id field
- 92 tests pass (33 new), zero regressions

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(persistence): add user feedback + follow-up run association

Phase 2-C: feedback and follow-up tracking.

- FeedbackRow ORM model (rating +1/-1, optional message_id, comment)
- FeedbackRepository with CRUD, list_by_run/thread, aggregate stats
- Feedback API endpoints: create, list, stats, delete
- follow_up_to_run_id in RunCreateRequest (explicit or auto-detected
  from latest successful run on the thread)
- Worker writes follow_up_to_run_id into human_message event metadata
- Gateway deps: feedback_repo factory + getter
- 17 new tests (14 FeedbackRepository + 3 follow-up association)
- 109 total tests pass, zero regressions

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* test+config: comprehensive Phase 2 test coverage + deprecate checkpointer config

- config.example.yaml: deprecate standalone checkpointer section, activate
  unified database:sqlite as default (drives both checkpointer + app data)
- New: test_thread_meta_repo.py (14 tests) — full ThreadMetaRepository coverage
  including check_access owner logic, list_by_owner pagination
- Extended test_run_repository.py (+4 tests) — completion preserves fields,
  list ordering desc, limit, owner_none returns all
- Extended test_run_journal.py (+8 tests) — on_chain_error, track_tokens=false,
  middleware no ai_message, unknown caller tokens, convenience fields,
  tool_error, non-summarization custom event
- Extended test_run_event_store.py (+7 tests) — DB batch seq continuity,
  make_run_event_store factory (memory/db/jsonl/fallback/unknown)
- Extended test_phase2b_integration.py (+4 tests) — create_or_reject persists,
  follow-up metadata, summarization in history, full DB-backed lifecycle
- Fixed DB integration test to use proper fake objects (not MagicMock)
  for JSON-serializable metadata
- 157 total Phase 2 tests pass, zero regressions

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* config: move default sqlite_dir to .deer-flow/data

Keep SQLite databases alongside other DeerFlow-managed data
(threads, memory) under the .deer-flow/ directory instead of a
top-level ./data folder.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(persistence): remove UTFJSON, use engine-level json_serializer + datetime.now()

- Replace custom UTFJSON type with standard sqlalchemy.JSON in all ORM
  models. Add json_serializer=json.dumps(ensure_ascii=False) to all
  create_async_engine calls so non-ASCII text (Chinese etc.) is stored
  as-is in both SQLite and Postgres.
- Change ORM datetime defaults from datetime.now(UTC) to datetime.now(),
  remove UTC imports.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(gateway): simplify deps.py with getter factory + inline repos

- Replace 6 identical getter functions with _require() factory.
- Inline 3 _make_*_repo() factories into langgraph_runtime(), call
  get_session_factory() once instead of 3 times.
- Add thread_meta upsert in start_run (services.py).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(docker): add UV_EXTRAS build arg for optional dependencies

Support installing optional dependency groups (e.g. postgres) at
Docker build time via UV_EXTRAS build arg:
  UV_EXTRAS=postgres docker compose build

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(journal): fix flush, token tracking, and consolidate tests

RunJournal fixes:
- _flush_sync: retain events in buffer when no event loop instead of
  dropping them; worker's finally block flushes via async flush().
- on_llm_end: add tool_calls filter and caller=="lead_agent" guard for
  ai_message events; mark message IDs for dedup with record_llm_usage.
- worker.py: persist completion data (tokens, message count) to RunStore
  in finally block.

Model factory:
- Auto-inject stream_usage=True for BaseChatOpenAI subclasses with
  custom api_base, so usage_metadata is populated in streaming responses.

Test consolidation:
- Delete test_phase2b_integration.py (redundant with existing tests).
- Move DB-backed lifecycle test into test_run_journal.py.
- Add tests for stream_usage injection in test_model_factory.py.
- Clean up executor/task_tool dead journal references.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(events): widen content type to str|dict in all store backends

Allow event content to be a dict (for structured OpenAI-format messages)
in addition to plain strings. Dict values are JSON-serialized for the DB
backend and deserialized on read; memory and JSONL backends handle dicts
natively. Trace truncation now serializes dicts to JSON before measuring.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(events): use metadata flag instead of heuristic for dict content detection

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(converters): add LangChain-to-OpenAI message format converters

Pure functions langchain_to_openai_message, langchain_to_openai_completion,
langchain_messages_to_openai, and _infer_finish_reason for converting
LangChain BaseMessage objects to OpenAI Chat Completions format, used by
RunJournal for event storage. 15 unit tests added.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(converters): handle empty list content as null, clean up test

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(events): human_message content uses OpenAI user message format

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(events): ai_message uses OpenAI format, add ai_tool_call message event

- ai_message content now uses {"role": "assistant", "content": "..."} format
- New ai_tool_call message event emitted when lead_agent LLM responds with tool_calls
- ai_tool_call uses langchain_to_openai_message converter for consistent format
- Both events include finish_reason in metadata ("stop" or "tool_calls")

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(events): add tool_result message event with OpenAI tool message format

Cache tool_call_id from on_tool_start keyed by run_id as fallback for on_tool_end,
then emit a tool_result message event (role=tool, tool_call_id, content) after each
successful tool completion.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(events): summary content uses OpenAI system message format

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(events): replace llm_start/llm_end with llm_request/llm_response in OpenAI format

Add on_chat_model_start to capture structured prompt messages as llm_request events.
Replace llm_end trace events with llm_response using OpenAI Chat Completions format.
Track llm_call_index to pair request/response events.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(events): add record_middleware method for middleware trace events

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* test(events): add full run sequence integration test for OpenAI content format

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(events): align message events with checkpoint format and add middleware tag injection

- Message events (ai_message, ai_tool_call, tool_result, human_message) now use
  BaseMessage.model_dump() format, matching LangGraph checkpoint values.messages
- on_tool_end extracts tool_call_id/name/status from ToolMessage objects
- on_tool_error now emits tool_result message events with error status
- record_middleware uses middleware:{tag} event_type and middleware category
- Summarization custom events use middleware:summarize category
- TitleMiddleware injects middleware:title tag via get_config() inheritance
- SummarizationMiddleware model bound with middleware:summarize tag
- Worker writes human_message using HumanMessage.model_dump()

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(threads): switch search endpoint to threads_meta table and sync title

- POST /api/threads/search now queries threads_meta table directly,
  removing the two-phase Store + Checkpointer scan approach
- Add ThreadMetaRepository.search() with metadata/status filters
- Add ThreadMetaRepository.update_display_name() for title sync
- Worker syncs checkpoint title to threads_meta.display_name on run completion
- Map display_name to values.title in search response for API compatibility

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(threads): history endpoint reads messages from event store

- POST /api/threads/{thread_id}/history now combines two data sources:
  checkpointer for checkpoint_id, metadata, title, thread_data;
  event store for messages (complete history, not truncated by summarization)
- Strip internal LangGraph metadata keys from response
- Remove full channel_values serialization in favor of selective fields

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix: remove duplicate optional-dependencies header in pyproject.toml

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(middleware): pass tagged config to TitleMiddleware ainvoke call

Without the config, the middleware:title tag was not injected,
causing the LLM response to be recorded as a lead_agent ai_message
in run_events.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix: resolve merge conflict in .env.example

Keep both DATABASE_URL (from persistence-scaffold) and WECOM
credentials (from main) after the merge.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(persistence): address review feedback on PR #1851

- Fix naive datetime.now() → datetime.now(UTC) in all ORM models
- Fix seq race condition in DbRunEventStore.put() with FOR UPDATE
  and UNIQUE(thread_id, seq) constraint
- Encapsulate _store access in RunManager.update_run_completion()
- Deduplicate _store.put() logic in RunManager via _persist_to_store()
- Add update_run_completion to RunStore ABC + MemoryRunStore
- Wire follow_up_to_run_id through the full create path
- Add error recovery to RunJournal._flush_sync() lost-event scenario
- Add migration note for search_threads breaking change
- Fix test_checkpointer_none_fix mock to set database=None

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* chore: update uv.lock

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(persistence): address 22 review comments from CodeQL, Copilot, and Code Quality

Bug fixes:
- Sanitize log params to prevent log injection (CodeQL)
- Reset threads_meta.status to idle/error when run completes
- Attach messages only to latest checkpoint in /history response
- Write threads_meta on POST /threads so new threads appear in search

Lint fixes:
- Remove unused imports (journal.py, migrations/env.py, test_converters.py)
- Convert lambda to named function (engine.py, Ruff E731)
- Remove unused logger definitions in repos (Ruff F841)
- Add logging to JSONL decode errors and empty except blocks
- Separate assert side-effects in tests (CodeQL)
- Remove unused local variables in tests (Ruff F841)
- Fix max_trace_content truncation to use byte length, not char length

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* style: apply ruff format to persistence and runtime files

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* Potential fix for pull request finding 'Statement has no effect'

Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com>

* refactor(runtime): introduce RunContext to reduce run_agent parameter bloat

Extract checkpointer, store, event_store, run_events_config, thread_meta_repo,
and follow_up_to_run_id into a frozen RunContext dataclass. Add get_run_context()
in deps.py to build the base context from app.state singletons. start_run() uses
dataclasses.replace() to enrich per-run fields before passing ctx to run_agent.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(gateway): move sanitize_log_param to app/gateway/utils.py

Extract the log-injection sanitizer from routers/threads.py into a shared
utils module and rename to sanitize_log_param (public API). Eliminates the
reverse service → router import in services.py.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* perf: use SQL aggregation for feedback stats and thread token usage

Replace Python-side counting in FeedbackRepository.aggregate_by_run with
a single SELECT COUNT/SUM query. Add RunStore.aggregate_tokens_by_thread
abstract method with SQL GROUP BY implementation in RunRepository and
Python fallback in MemoryRunStore. Simplify the thread_token_usage
endpoint to delegate to the new method, eliminating the limit=10000
truncation risk.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* docs: annotate DbRunEventStore.put() as low-frequency path

Add docstring clarifying that put() opens a per-call transaction with
FOR UPDATE and should only be used for infrequent writes (currently
just the initial human_message event). High-throughput callers should
use put_batch() instead.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(threads): fall back to Store search when ThreadMetaRepository is unavailable

When database.backend=memory (default) or no SQL session factory is
configured, search_threads now queries the LangGraph Store instead of
returning 503. Returns empty list if neither Store nor repo is available.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(persistence): introduce ThreadMetaStore ABC for backend-agnostic thread metadata

Add ThreadMetaStore abstract base class with create/get/search/update/delete
interface. ThreadMetaRepository (SQL) now inherits from it. New
MemoryThreadMetaStore wraps LangGraph BaseStore for memory-mode deployments.

deps.py now always provides a non-None thread_meta_repo, eliminating all
`if thread_meta_repo is not None` guards in services.py, worker.py, and
routers/threads.py. search_threads no longer needs a Store fallback branch.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(history): read messages from checkpointer instead of RunEventStore

The /history endpoint now reads messages directly from the
checkpointer's channel_values (the authoritative source) instead of
querying RunEventStore.list_messages(). The RunEventStore API is
preserved for other consumers.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(persistence): address new Copilot review comments

- feedback.py: validate thread_id/run_id before deleting feedback
- jsonl.py: add path traversal protection with ID validation
- run_repo.py: parse `before` to datetime for PostgreSQL compat
- thread_meta_repo.py: fix pagination when metadata filter is active
- database_config.py: use resolve_path for sqlite_dir consistency

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* Implement skill self-evolution and skill_manage flow (#1874)

* chore: ignore .worktrees directory

* Add skill_manage self-evolution flow

* Fix CI regressions for skill_manage

* Address PR review feedback for skill evolution

* fix(skill-evolution): preserve history on delete

* fix(skill-evolution): tighten scanner fallbacks

* docs: add skill_manage e2e evidence screenshot

* fix(skill-manage): avoid blocking fs ops in session runtime

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>

* fix(config): resolve sqlite_dir relative to CWD, not Paths.base_dir

resolve_path() resolves relative to Paths.base_dir (.deer-flow),
which double-nested the path to .deer-flow/.deer-flow/data/app.db.
Use Path.resolve() (CWD-relative) instead.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* Feature/feishu receive file (#1608)

* feat(feishu): add channel file materialization hook for inbound messages

- Introduce Channel.receive_file(msg, thread_id) as a base method for file materialization; default is no-op.
- Implement FeishuChannel.receive_file to download files/images from Feishu messages, save to sandbox, and inject virtual paths into msg.text.
- Update ChannelManager to call receive_file for any channel if msg.files is present, enabling downstream model access to user-uploaded files.
- No impact on Slack/Telegram or other channels (they inherit the default no-op).

* style(backend): format code with ruff for lint compliance

- Auto-formatted packages/harness/deerflow/agents/factory.py and tests/test_create_deerflow_agent.py using `ruff format`
- Ensured both files conform to project linting standards
- Fixes CI lint check failures caused by code style issues

* fix(feishu): handle file write operation asynchronously to prevent blocking

* fix(feishu): rename GetMessageResourceRequest to _GetMessageResourceRequest and remove redundant code

* test(feishu): add tests for receive_file method and placeholder replacement

* fix(manager): remove unnecessary type casting for channel retrieval

* fix(feishu): update logging messages to reflect resource handling instead of image

* fix(feishu): sanitize filename by replacing invalid characters in file uploads

* fix(feishu): improve filename sanitization and reorder image key handling in message processing

* fix(feishu): add thread lock to prevent filename conflicts during file downloads

* fix(test): correct bad merge in test_feishu_parser.py

* chore: run ruff and apply formatting cleanup
fix(feishu): preserve rich-text attachment order and improve fallback filename handling

* fix(docker): restore gateway env vars and fix langgraph empty arg issue (#1915)

Two production docker-compose.yaml bugs prevent `make up` from working:

1. Gateway missing DEER_FLOW_CONFIG_PATH and DEER_FLOW_EXTENSIONS_CONFIG_PATH
   environment overrides. Added in fb2d99f (#1836) but accidentally reverted
   by ca2fb95 (#1847). Without them, gateway reads host paths from .env via
   env_file, causing FileNotFoundError inside the container.

2. Langgraph command fails when LANGGRAPH_ALLOW_BLOCKING is unset (default).
   Empty $${allow_blocking} inserts a bare space between flags, causing
   ' --no-reload' to be parsed as unexpected extra argument. Fix by building
   args string first and conditionally appending --allow-blocking.

Co-authored-by: cooper <cooperfu@tencent.com>

* fix(frontend): resolve invalid HTML nesting and tabnabbing vulnerabilities (#1904)

* fix(frontend): resolve invalid HTML nesting and tabnabbing vulnerabilities

Fix `<button>` inside `<a>` invalid HTML in artifact components and add
missing `noopener,noreferrer` to `window.open` calls to prevent reverse
tabnabbing.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix(frontend): address Copilot review on tabnabbing and double-tab-open

Remove redundant parent onClick on web_fetch ChainOfThoughtStep to
prevent opening two tabs on link click, and explicitly null out
window.opener after window.open() for defensive tabnabbing hardening.

---------

Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>

* refactor(persistence): organize entities into per-entity directories

Restructure the persistence layer from horizontal "models/ + repositories/"
split into vertical entity-aligned directories. Each entity (thread_meta,
run, feedback) now owns its ORM model, abstract interface (where applicable),
and concrete implementations under a single directory with an aggregating
__init__.py for one-line imports.

Layout:
  persistence/thread_meta/{base,model,sql,memory}.py
  persistence/run/{model,sql}.py
  persistence/feedback/{model,sql}.py

models/__init__.py is kept as a facade so Alembic autogenerate continues to
discover all ORM tables via Base.metadata. RunEventRow remains under
models/run_event.py because its storage implementation lives in
runtime/events/store/db.py and has no matching repository directory.

The repositories/ directory is removed entirely. All call sites in
gateway/deps.py and tests are updated to import from the new entity
packages, e.g.:

    from deerflow.persistence.thread_meta import ThreadMetaRepository
    from deerflow.persistence.run import RunRepository
    from deerflow.persistence.feedback import FeedbackRepository

Full test suite passes (1690 passed, 14 skipped).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(gateway): sync thread rename and delete through ThreadMetaStore

The POST /threads/{id}/state endpoint previously synced title changes
only to the LangGraph Store via _store_upsert. In sqlite mode the search
endpoint reads from the ThreadMetaRepository SQL table, so renames never
appeared in /threads/search until the next agent run completed (worker.py
syncs title from checkpoint to thread_meta in its finally block).

Likewise the DELETE /threads/{id} endpoint cleaned up the filesystem,
Store, and checkpointer but left the threads_meta row orphaned in sqlite,
so deleted threads kept appearing in /threads/search.

Fix both endpoints by routing through the ThreadMetaStore abstraction
which already has the correct sqlite/memory implementations wired up by
deps.py. The rename path now calls update_display_name() and the delete
path calls delete() — both work uniformly across backends.

Verified end-to-end with curl in gateway mode against sqlite backend.
Existing test suite (1690 passed) and focused router/repo tests pass.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(gateway): route all thread metadata access through ThreadMetaStore

Following the rename/delete bug fix in PR1, migrate the remaining direct
LangGraph Store reads/writes in the threads router and services to the
ThreadMetaStore abstraction so that the sqlite and memory backends behave
identically and the legacy dual-write paths can be removed.

Migrated endpoints (threads.py):
- create_thread: idempotency check + write now use thread_meta_repo.get/create
  instead of dual-writing the LangGraph Store and the SQL row.
- get_thread: reads from thread_meta_repo.get; the checkpoint-only fallback
  for legacy threads is preserved.
- patch_thread: replaced _store_get/_store_put with thread_meta_repo.update_metadata.
- delete_thread_data: dropped the legacy store.adelete; thread_meta_repo.delete
  already covers it.

Removed dead code (services.py):
- _upsert_thread_in_store — redundant with the immediately following
  thread_meta_repo.create() call.
- _sync_thread_title_after_run — worker.py's finally block already syncs
  the title via thread_meta_repo.update_display_name() after each run.

Removed dead code (threads.py):
- _store_get / _store_put / _store_upsert helpers (no remaining callers).
- THREADS_NS constant.
- get_store import (router no longer touches the LangGraph Store directly).

New abstract method:
- ThreadMetaStore.update_metadata(thread_id, metadata) merges metadata into
  the thread's metadata field. Implemented in both ThreadMetaRepository (SQL,
  read-modify-write inside one session) and MemoryThreadMetaStore. Three new
  unit tests cover merge / empty / nonexistent behaviour.

Net change: -134 lines. Full test suite: 1693 passed, 14 skipped.
Verified end-to-end with curl in gateway mode against sqlite backend
(create / patch / get / rename / search / delete).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com>
Co-authored-by: DanielWalnut <45447813+hetaoBackend@users.noreply.github.com>
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
Co-authored-by: JilongSun <965640067@qq.com>
Co-authored-by: jie <49781832+stan-fu@users.noreply.github.com>
Co-authored-by: cooper <cooperfu@tencent.com>
Co-authored-by: yangzheli <43645580+yangzheli@users.noreply.github.com>

* feat(auth): release-validation pass for 2.0-rc — 12 blockers + simplify follow-ups (#2008)

* feat(auth): introduce backend auth module

Port RFC-001 authentication core from PR #1728:
- JWT token handling (create_access_token, decode_token, TokenPayload)
- Password hashing (bcrypt) with verify_password
- SQLite UserRepository with base interface
- Provider Factory pattern (LocalAuthProvider)
- CLI reset_admin tool
- Auth-specific errors (AuthErrorCode, TokenError, AuthErrorResponse)

Deps:
- bcrypt>=4.0.0
- pyjwt>=2.9.0
- email-validator>=2.0.0
- backend/uv.toml pins public PyPI index

Tests: 12 pure unit tests (test_auth_config.py, test_auth_errors.py).

Scope note: authz.py, test_auth.py, and test_auth_type_system.py are
deferred to commit 2 because they depend on middleware and deps wiring
that is not yet in place. Commit 1 stays "pure new files only" as the
spec mandates.

* feat(auth): wire auth end-to-end (middleware + frontend replacement)

Backend:
- Port auth_middleware, csrf_middleware, langgraph_auth, routers/auth
- Port authz decorator (owner_filter_key defaults to 'owner_id')
- Merge app.py: register AuthMiddleware + CSRFMiddleware + CORS, add
  _ensure_admin_user lifespan hook, _migrate_orphaned_threads helper,
  register auth router
- Merge deps.py: add get_local_provider, get_current_user_from_request,
  get_optional_user_from_request; keep get_current_user as thin str|None
  adapter for feedback router
- langgraph.json: add auth path pointing to langgraph_auth.py:auth
- Rename metadata['user_id'] -> metadata['owner_id'] in langgraph_auth
  (both metadata write and LangGraph filter dict) + test fixtures

Frontend:
- Delete better-auth library and api catch-all route
- Remove better-auth npm dependency and env vars (BETTER_AUTH_SECRET,
  BETTER_AUTH_GITHUB_*) from env.js
- Port frontend/src/core/auth/* (AuthProvider, gateway-config,
  proxy-policy, server-side getServerSideUser, types)
- Port frontend/src/core/api/fetcher.ts
- Port (auth)/layout, (auth)/login, (auth)/setup pages
- Rewrite workspace/layout.tsx as server component that calls
  getServerSideUser and wraps in AuthProvider
- Port workspace/workspace-content.tsx for the client-side sidebar logic

Tests:
- Port 5 auth test files (test_auth, test_auth_middleware,
  test_auth_type_system, test_ensure_admin, test_langgraph_auth)
- 176 auth tests PASS

After this commit: login/logout/registration flow works, but persistence
layer does not yet filter by owner_id. Commit 4 closes that gap.

* feat(auth): account settings page + i18n

- Port account-settings-page.tsx (change password, change email, logout)
- Wire into settings-dialog.tsx as new "account" section with UserIcon,
  rendered first in the section list
- Add i18n keys:
  - en-US/zh-CN: settings.sections.account ("Account" / "账号")
  - en-US/zh-CN: button.logout ("Log out" / "退出登录")
  - types.ts: matching type declarations

* feat(auth): enforce owner_id across 2.0-rc persistence layer

Add request-scoped contextvar-based owner filtering to threads_meta,
runs, run_events, and feedback repositories. Router code is unchanged
— isolation is enforced at the storage layer so that any caller that
forgets to pass owner_id still gets filtered results, and new routes
cannot accidentally leak data.

Core infrastructure
-------------------
- deerflow/runtime/user_context.py (new):
  - ContextVar[CurrentUser | None] with default None
  - runtime_checkable CurrentUser Protocol (structural subtype with .id)
  - set/reset/get/require helpers
  - AUTO sentinel + resolve_owner_id(value, method_name) for sentinel
    three-state resolution: AUTO reads contextvar, explicit str
    overrides, explicit None bypasses the filter (for migration/CLI)

Repository changes
------------------
- ThreadMetaRepository: create/get/search/update_*/delete gain
  owner_id=AUTO kwarg; read paths filter by owner, writes stamp it,
  mutations check ownership before applying
- RunRepository: put/get/list_by_thread/delete gain owner_id=AUTO kwarg
- FeedbackRepository: create/get/list_by_run/list_by_thread/delete
  gain owner_id=AUTO kwarg
- DbRunEventStore: list_messages/list_events/list_messages_by_run/
  count_messages/delete_by_thread/delete_by_run gain owner_id=AUTO
  kwarg. Write paths (put/put_batch) read contextvar softly: when a
  request-scoped user is available, owner_id is stamped; background
  worker writes without a user context pass None which is valid
  (orphan row to be bound by migration)

Schema
------
- persistence/models/run_event.py: RunEventRow.owner_id = Mapped[
  str | None] = mapped_column(String(64), nullable=True, index=True)
- No alembic migration needed: 2.0 ships fresh, Base.metadata.create_all
  picks up the new column automatically

Middleware
----------
- auth_middleware.py: after cookie check, call get_optional_user_from_
  request to load the real User, stamp it into request.state.user AND
  the contextvar via set_current_user, reset in a try/finally. Public
  paths and unauthenticated requests continue without contextvar, and
  @require_auth handles the strict 401 path

Test infrastructure
-------------------
- tests/conftest.py: @pytest.fixture(autouse=True) _auto_user_context
  sets a default SimpleNamespace(id="test-user-autouse") on every test
  unless marked @pytest.mark.no_auto_user. Keeps existing 20+
  persistence tests passing without modification
- pyproject.toml [tool.pytest.ini_options]: register no_auto_user
  marker so pytest does not emit warnings for opt-out tests
- tests/test_user_context.py: 6 tests covering three-state semantics,
  Protocol duck typing, and require/optional APIs
- tests/test_thread_meta_repo.py: one test updated to pass owner_id=
  None explicitly where it was previously relying on the old default

Test results
------------
- test_user_context.py: 6 passed
- test_auth*.py + test_langgraph_auth.py + test_ensure_admin.py: 127
- test_run_event_store / test_run_repository / test_thread_meta_repo
  / test_feedback: 92 passed
- Full backend suite: 1905 passed, 2 failed (both @requires_llm flaky
  integration tests unrelated to auth), 1 skipped

* feat(auth): extend orphan migration to 2.0-rc persistence tables

_ensure_admin_user now runs a three-step pipeline on every boot:

  Step 1 (fatal):     admin user exists / is created / password is reset
  Step 2 (non-fatal): LangGraph store orphan threads → admin
  Step 3 (non-fatal): SQL persistence tables → admin
    - threads_meta
    - runs
    - run_events
    - feedback

Each step is idempotent. The fatal/non-fatal split mirrors PR #1728's
original philosophy: admin creation failure blocks startup (the system
is unusable without an admin), whereas migration failures log a warning
and let the service proceed (a partial migration is recoverable; a
missing admin is not).

Key helpers
-----------
- _iter_store_items(store, namespace, *, page_size=500):
  async generator that cursor-paginates across LangGraph store pages.
  Fixes PR #1728's hardcoded limit=1000 bug that would silently lose
  orphans beyond the first page.

- _migrate_orphaned_threads(store, admin_user_id):
  Rewritten to use _iter_store_items. Returns the migrated count so the
  caller can log it; raises only on unhandled exceptions.

- _migrate_orphan_sql_tables(admin_user_id):
  Imports the 4 ORM models lazily, grabs the shared session factory,
  runs one UPDATE per table in a single transaction, commits once.
  No-op when no persistence backend is configured (in-memory dev).

Tests: test_ensure_admin.py (8 passed)

* test(auth): port AUTH test plan docs + lint/format pass

- Port backend/docs/AUTH_TEST_PLAN.md and AUTH_UPGRADE.md from PR #1728
- Rename metadata.user_id → metadata.owner_id in AUTH_TEST_PLAN.md
  (4 occurrences from the original PR doc)
- ruff auto-fix UP037 in sentinel type annotations: drop quotes around
  "str | None | _AutoSentinel" now that from __future__ import
  annotations makes them implicit string forms
- ruff format: 2 files (app/gateway/app.py, runtime/user_context.py)

Note on test coverage additions:
- conftest.py autouse fixture was already added in commit 4 (had to
  be co-located with the repository changes to keep pre-existing
  persistence tests passing)
- cross-user isolation E2E tests (test_owner_isolation.py) deferred
  — enforcement is already proven by the 98-test repository suite
  via the autouse fixture + explicit _AUTO sentinel exercises
- New test cases (TC-API-17..20, TC-ATK-13, TC-MIG-01..07) listed
  in AUTH_TEST_PLAN.md are deferred to a follow-up PR — they are
  manual-QA test cases rather than pytest code, and the spec-level
  coverage is already met by test_user_context.py + the 98-test
  repository suite.

Final test results:
- Auth suite (test_auth*, test_langgraph_auth, test_ensure_admin,
  test_user_context): 186 passed
- Persistence suite (test_run_event_store, test_run_repository,
  test_thread_meta_repo, test_feedback): 98 passed
- Lint: ruff check + ruff format both clean

* test(auth): add cross-user isolation test suite

10 tests exercising the storage-layer owner filter by manually
switching the user_context contextvar between two users. Verifies
the safety invariant:

  After a repository write with owner_id=A, a subsequent read with
  owner_id=B must not return the row, and vice versa.

Covers all 4 tables that own user-scoped data:

TC-API-17  threads_meta  — read, search, update, delete cross-user
TC-API-18  runs          — get, list_by_thread, delete cross-user
TC-API-19  run_events    — list_messages, list_events, count_messages,
                           delete_by_thread (CRITICAL: raw conversation
                           content leak vector)
TC-API-20  feedback      — get, list_by_run, delete cross-user

Plus two meta-tests verifying the sentinel pattern itself:
- AUTO + unset contextvar raises RuntimeError
- explicit owner_id=None bypasses the filter (migration escape hatch)

Architecture note
-----------------
These tests bypass the HTTP layer by design. The full chain
(cookie → middleware → contextvar → repository) is covered piecewise:

- test_auth_middleware.py: middleware sets contextvar from cookies
- test_owner_isolation.py: repositories enforce isolation when
  contextvar is set to different users

Together they prove the end-to-end safety property without the
ceremony of spinning up a full TestClient + in-memory DB for every
router endpoint.

Tests pass: 231 (full auth + persistence + isolation suite)
Lint: clean

* refactor(auth): migrate user repository to SQLAlchemy ORM

Move the users table into the shared persistence engine so auth
matches the pattern of threads_meta, runs, run_events, and feedback —
one engine, one session factory, one schema init codepath.

New files
---------
- persistence/user/__init__.py, persistence/user/model.py: UserRow
  ORM class with partial unique index on (oauth_provider, oauth_id)
- Registered in persistence/models/__init__.py so
  Base.metadata.create_all() picks it up

Modified
--------
- auth/repositories/sqlite.py: rewritten as async SQLAlchemy,
  identical constructor pattern to the other four repositories
  (def __init__(self, session_factory) + self._sf = session_factory)
- auth/config.py: drop users_db_path field — storage is configured
  through config.database like every other table
- deps.py/get_local_provider: construct SQLiteUserRepository with
  the shared session factory, fail fast if engine is not initialised
- tests/test_auth.py: rewrite test_sqlite_round_trip_new_fields to
  use the shared engine (init_engine + close_engine in a tempdir)
- tests/test_auth_type_system.py: add per-test autouse fixture that
  spins up a scratch engine and resets deps._cached_* singletons

* refactor(auth): remove SQL orphan migration (unused in supported scenarios)

The _migrate_orphan_sql_tables helper existed to bind NULL owner_id
rows in threads_meta, runs, run_events, and feedback to the admin on
first boot. But in every supported upgrade path, it's a no-op:

  1. Fresh install: create_all builds fresh tables, no legacy rows
  2. No-auth → with-auth (no existing persistence DB): persistence
     tables are created fresh by create_all, no legacy rows
  3. No-auth → with-auth (has existing persistence DB from #1930):
     NOT a supported upgrade path — "有 DB 到有 DB" schema evolution
     is out of scope; users wipe DB or run manual ALTER

So the SQL orphan migration never has anything to do in the
supported matrix. Delete the function, simplify _ensure_admin_user
from a 3-step pipeline to a 2-step one (admin creation + LangGraph
store orphan migration only).

LangGraph store orphan migration stays: it serves the real
"no-auth → with-auth" upgrade path where a user's existing LangGraph
thread metadata has no owner_id field and needs to be stamped with
the newly-created admin's id.

Tests: 284 passed (auth + persistence + isolation)
Lint: clean

* security(auth): write initial admin password to 0600 file instead of logs

CodeQL py/clear-text-logging-sensitive-data flagged 3 call sites that
logged the auto-generated admin password to stdout via logger.info().
Production log aggregators (ELK/Splunk/etc) would have captured those
cleartext secrets. Replace with a shared helper that writes to
.deer-flow/admin_initial_credentials.txt with mode 0600, and log only
the path.

New file
--------
- app/gateway/auth/credential_file.py: write_initial_credentials()
  helper. Takes email, password, and a "initial"/"reset" label.
  Creates .deer-flow/ if missing, writes a header comment plus the
  email+password, chmods 0o600, returns the absolute Path.

Modified
--------
- app/gateway/app.py: both _ensure_admin_user paths (fresh creation
  + needs_setup password reset) now write to file and log the path
- app/gateway/auth/reset_admin.py: rewritten to use the shared ORM
  repo (SQLiteUserRepository with session_factory) and the
  credential_file helper. The previous implementation was broken
  after the earlier ORM refactor — it still imported _get_users_conn
  and constructed SQLiteUserRepository() without a session factory.

No tests changed — the three password-log sites are all exercised
via existing test_ensure_admin.py which checks that startup
succeeds, not that a specific string appears in logs.

CodeQL alerts 272, 283, 284: all resolved.

* security(auth): strict JWT validation in middleware (fix junk cookie bypass)

AUTH_TEST_PLAN test 7.5.8 expects junk cookies to be rejected with
401. The previous middleware behaviour was "presence-only": check
that some access_token cookie exists, then pass through. In
combination with my Task-12 decision to skip @require_auth
decorators on routes, this created a gap where a request with any
cookie-shaped string (e.g. access_token=not-a-jwt) would bypass
authentication on routes that do not touch the repository
(/api/models, /api/mcp/config, /api/memory, /api/skills, …).

Fix: middleware now calls get_current_user_from_request() strictly
and catches the resulting HTTPException to render a 401 with the
proper fine-grained error code (token_invalid, token_expired,
user_not_found, …). On success it stamps request.state.user and
the contextvar so repository-layer owner filters work downstream.

The 4 old "_with_cookie_passes" tests in test_auth_middleware.py
were written for the presence-only behaviour; they asserted that
a junk cookie would make the handler return 200. They are renamed
to "_with_junk_cookie_rejected" and their assertions flipped to
401. The negative path (no cookie → 401 not_authenticated)
is unchanged.

Verified:
  no cookie       → 401 not_authenticated
  junk cookie     → 401 token_invalid     (the fixed bug)
  expired cookie  → 401 token_expired

Tests: 284 passed (auth + persistence + isolation)
Lint: clean

* security(auth): wire @require_permission(owner_check=True) on isolation routes

Apply the require_permission decorator to all 28 routes that take a
{thread_id} path parameter. Combined with the strict middleware
(previous commit), this gives the double-layer protection that
AUTH_TEST_PLAN test 7.5.9 documents:

  Layer 1 (AuthMiddleware): cookie + JWT validation, rejects junk
                            cookies and stamps request.state.user
  Layer 2 (@require_permission with owner_check=True): per-resource
                            ownership verification via
                            ThreadMetaStore.check_access — returns
                            404 if a different user owns the thread

The decorator's owner_check branch is rewritten to use the SQL
thread_meta_repo (the 2.0-rc persistence layer) instead of the
LangGraph store path that PR #1728 used (_store_get / get_store
in routers/threads.py). The inject_record convenience is dropped
— no caller in 2.0 needs the LangGraph blob, and the SQL repo has
a different shape.

Routes decorated (28 total):
- threads.py: delete, patch, get, get-state, post-state, post-history
- thread_runs.py: post-runs, post-runs-stream, post-runs-wait,
  list_runs, get_run, cancel_run, join_run, stream_existing_run,
  list_thread_messages, list_run_messages, list_run_events,
  thread_token_usage
- feedback.py: create, list, stats, delete
- uploads.py: upload (added Request param), list, delete
- artifacts.py: get_artifact
- suggestions.py: generate (renamed body parameter to avoid
  conflict with FastAPI Request)

Test fixes:
- test_suggestions_router.py: bypass the decorator via __wrapped__
  (the unit tests cover parsing logic, not auth — no point spinning
  up a thread_meta_repo just to test JSON unwrapping)
- test_auth_middleware.py 4 fake-cookie tests: already updated in
  the previous commit (745bf432)

Tests: 293 passed (auth + persistence + isolation + suggestions)
Lint: clean

* security(auth): defense-in-depth fixes from release validation pass

Eight findings caught while running the AUTH_TEST_PLAN end-to-end against
the deployed sg_dev stack. Each is a pre-condition for shipping
release/2.0-rc that the previous PRs missed.

Backend hardening
- routers/auth.py: rate limiter X-Real-IP now requires AUTH_TRUSTED_PROXIES
  whitelist (CIDR/IP allowlist). Without nginx in front, the previous code
  honored arbitrary X-Real-IP, letting an attacker rotate the header to
  fully bypass the per-IP login lockout.
- routers/auth.py: 36-entry common-password blocklist via Pydantic
  field_validator on RegisterRequest + ChangePasswordRequest. The shared
  _validate_strong_password helper keeps the constraint in one place.
- routers/threads.py: ThreadCreateRequest + ThreadPatchRequest strip
  server-reserved metadata keys (owner_id, user_id) via Pydantic
  field_validator so a forged value can never round-trip back to other
  clients reading the same thread. The actual ownership invariant stays
  on the threads_meta row; this closes the metadata-blob echo gap.
- authz.py + thread_meta/sql.py: require_permission gains a require_existing
  flag plumbed through check_access(require_existing=True). Destructive
  routes (DELETE/PATCH/state-update/runs/feedback) now treat a missing
  thread_meta row as 404 instead of "untracked legacy thread, allow",
  closing the cross-user delete-idempotence gap where any user could
  successfully DELETE another user's deleted thread.
- repositories/sqlite.py + base.py: update_user raises UserNotFoundError
  on a vanished row instead of silently returning the input. Concurrent
  delete during password reset can no longer look like a successful update.
- runtime/user_context.py: resolve_owner_id() coerces User.id (UUID) to
  str at the contextvar boundary so SQLAlchemy String(64) columns can
  bind it. The whole 2.0-rc isolation pipeline was previously broken
  end-to-end (POST /api/threads → 500 "type 'UUID' is not supported").
- persistence/engine.py: SQLAlchemy listener enables PRAGMA journal_mode=WAL,
  synchronous=NORMAL, foreign_keys=ON on every new SQLite connection.
  TC-UPG-06 in the test plan expects WAL; previous code shipped with the
  default 'delete' journal.
- auth_middleware.py: stamp request.state.auth = AuthContext(...) so
  @require_permission's short-circuit fires; previously every isolation
  request did a duplicate JWT decode + users SELECT. Also unifies the
  401 payload through AuthErrorResponse(...).model_dump().
- app.py: _ensure_admin_user restructure removes the noqa F821 scoping
  bug where 'password' was referenced outside the branch that defined it.
  New _announce_credentials helper absorbs the duplicate log block in
  the fresh-admin and reset-admin branches.

* fix(frontend+nginx): rollout CSRF on every state-changing client path

The frontend was 100% broken in gateway-pro mode for any user trying to
open a specific chat thread. Three cumulative bugs each silently
masked the next.

LangGraph SDK CSRF gap (api-client.ts)
- The Client constructor took only apiUrl, no defaultHeaders, no fetch
  interceptor. The SDK's internal fetch never sent X-CSRF-Token, so
  every state-changing /api/langgraph-compat/* call (runs/stream,
  threads/search, threads/{tid}/history, ...) hit CSRFMiddleware and
  got 403 before reaching the auth check. UI symptom: empty thread page
  with no error message; the SPA's hooks swallowed the rejection.
- Fix: pass an onRequest hook that injects X-CSRF-Token from the
  csrf_token cookie per request. Reading the cookie per call (not at
  construction time) handles login / logout / password-change cookie
  rotation transparently. The SDK's prepareFetchOptions calls
  onRequest for both regular requests AND streaming/SSE/reconnect, so
  the same hook covers runs.stream and runs.joinStream.

Raw fetch CSRF gap (7 files)
- Audit: 11 frontend fetch sites, only 2 included CSRF (login/setup +
  account-settings change-password). The other 7 routed through raw
  fetch() with no header — suggestions, memory, agents, mcp, skills,
  uploads, and the local thread cleanup hook all 403'd silently.
- Fix: enhance fetcher.ts:fetchWithAuth to auto-inject X-CSRF-Token on
  POST/PUT/DELETE/PATCH from a single shared readCsrfCookie() helper.
  Convert all 7 raw fetch() callers to fetchWithAuth so the contract
  is centrally enforced. api-client.ts and fetcher.ts share
  readCsrfCookie + STATE_CHANGING_METHODS to avoid drift.

nginx routing + buffering (nginx.local.conf)
- The auth feature shipped without updating the nginx config: per-API
  explicit location blocks but no /api/v1/auth/, /api/feedback, /api/runs.
  The frontend's client-side fetches to /api/v1/auth/login/local 404'd
  from the Next.js side because nginx routed /api/* to the frontend.
- Fix: add catch-all `location /api/` that proxies to the gateway.
  nginx longest-prefix matching keeps the explicit blocks (/api/models,
  /api/threads regex, /api/langgraph/, ...) winning for their paths.
- Fix: disable proxy_buffering + proxy_request_buffering for the
  frontend `location /` block. Without it, nginx tries to spool large
  Next.js chunks into /var/lib/nginx/proxy (root-owned) and fails with
  Permission denied → ERR_INCOMPLETE_CHUNKED_ENCODING → ChunkLoadError.

* test(auth): release-validation test infra and new coverage

Test fixtures and unit tests added during the validation pass.

Router test helpers (NEW: tests/_router_auth_helpers.py)
- make_authed_test_app(): builds a FastAPI test app with a stub
  middleware that stamps request.state.user + request.state.auth and a
  permissive thread_meta_repo mock. TestClient-based router tests
  (test_artifacts_router, test_threads_router) use it instead of bare
  FastAPI() so the new @require_permission(owner_check=True) decorators
  short-circuit cleanly.
- call_unwrapped(): walks the __wrapped__ chain to invoke the underlying
  handler without going through the authz wrappers. Direct-call tests
  (test_uploads_router) use it. Typed with ParamSpec so the wrapped
  signature flows through.

Backend test additions
- test_auth.py: 7 tests for the new _get_client_ip trust model (no
  proxy / trusted proxy / untrusted peer / XFF rejection / invalid
  CIDR / no client). 5 tests for the password blocklist (literal,
  case-insensitive, strong password accepted, change-password binding,
  short-password length-check still fires before blocklist).
  test_update_user_raises_when_row_concurrently_deleted: closes a
  shipped-without-coverage gap on the new UserNotFoundError contract.
- test_thread_meta_repo.py: 4 tests for check_access(require_existing=True)
  — strict missing-row denial, strict owner match, strict owner mismatch,
  strict null-owner still allowed (shared rows survive the tightening).
- test_ensure_admin.py: 3 tests for _migrate_orphaned_threads /
  _iter_store_items pagination, covering the TC-UPG-02 upgrade story
  end-to-end via mock store. Closes the gap where the cursor pagination
  was untested even though the previous PR rewrote it.
- test_threads_router.py: 5 tests for _strip_reserved_metadata
  (owner_id removal, user_id removal, safe-keys passthrough, empty
  input, both-stripped).
- test_auth_type_system.py: replace "password123" fixtures with
  Tr0ub4dor3a / AnotherStr0ngPwd! so the new password blocklist
  doesn't reject the test data.

* docs(auth): refresh TC-DOCKER-05 + document Docker validation gap

- AUTH_TEST_PLAN.md TC-DOCKER-05: the previous expectation
  ("admin password visible in docker logs") was stale after the simplify
  pass that moved credentials to a 0600 file. The grep "Password:" check
  would have silently failed and given a false sense of coverage. New
  expectation matches the actual file-based path: 0600 file in
  DEER_FLOW_HOME, log shows the path (not the secret), reverse-grep
  asserts no leaked password in container logs.
- NEW: docs/AUTH_TEST_DOCKER_GAP.md documents the only un-executed
  block in the test plan (TC-DOCKER-01..06). Reason: sg_dev validation
  host has no Docker daemon installed. The doc maps each Docker case
  to an already-validated bare-metal equivalent (TC-1.1, TC-REENT-01,
  TC-API-02 etc.) so the gap is auditable, and includes pre-flight
  reproduction steps for whoever has Docker available.

---------

Co-authored-by: greatmengqi <chenmengqi.0376@bytedance.com>

* fix(persistence): stream hang when run_events.backend=db

DbRunEventStore._user_id_from_context() returned user.id without
coercing it to str. User.id is a Pydantic UUID, and aiosqlite cannot
bind a raw UUID object to a VARCHAR column, so the INSERT for the
initial human_message event silently rolled back and raised out of
the worker task. Because that put() sat outside the worker's try
block, the finally-clause that publishes end-of-stream never ran
and the SSE stream hung forever.

jsonl mode was unaffected because json.dumps(default=str) coerces
UUID objects transparently.

Fixes:
- db.py: coerce user.id to str at the context-read boundary (matches
  what resolve_user_id already does for the other repositories)
- worker.py: move RunJournal init + human_message put inside the try
  block so any failure flows through the finally/publish_end path
  instead of hanging the subscriber

Defense-in-depth:
- engine.py: add PRAGMA busy_timeout=5000 so checkpointer and event
  store wait for each other on the shared deerflow.db file instead
  of failing immediately under write-lock contention
- journal.py: skip fire-and-forget _flush_sync when a previous flush
  task is still in flight, to avoid piling up concurrent put_batch
  writes on the same SQLAlchemy engine during streaming; flush() now
  waits for pending tasks before draining the buffer
- database_config.py: doc-only update clarifying WAL + busy_timeout
  keep the unified deerflow.db safe for both workloads

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* chore(persistence): drop redundant busy_timeout PRAGMA

Python's sqlite3 driver defaults to a 5-second busy timeout via the
``timeout`` kwarg of ``sqlite3.connect``, and aiosqlite + SQLAlchemy's
aiosqlite dialect inherit that default. Setting ``PRAGMA busy_timeout=5000``
explicitly was a no-op — verified by reading back the PRAGMA on a fresh
connection (it already reports 5000ms without our PRAGMA).

Concurrent stress test (50 checkpoint writes + 20 event batches + 50
thread_meta updates on the same deerflow.db) still completes with zero
errors and 200/200 rows after removing the explicit PRAGMA.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(rebase): remove duplicate definitions and update stale module paths

Rebase left duplicate function blocks in worker.py (triple human_message
write causing 3x user messages in /history), deps.py, and prompt.py.
Also update checkpointer imports from the old deerflow.agents.checkpointer
path to deerflow.runtime.checkpointer, and clean up orphaned feedback
props in the frontend message components.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(user-context): add DEFAULT_USER_ID and get_effective_user_id helper

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(paths): add user-aware path methods with optional user_id parameter

Add _validate_user_id(), user_dir(), user_memory_file(), user_agent_memory_file()
and optional keyword-only user_id parameter to all thread-related path methods.
When user_id is provided, paths resolve under users/{user_id}/threads/{thread_id}/;
when omitted, legacy layout is preserved for backward compatibility.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(memory): add user_id to MemoryStorage interface for per-user isolation

Thread user_id through MemoryStorage.load/reload/save abstract methods and
FileMemoryStorage, re-keying the in-memory cache from bare agent_name to a
(user_id, agent_name) tuple to prevent cross-user cache collisions.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(memory): thread user_id through memory updater layer

Add `user_id` keyword-only parameter to all public updater functions
(_save_memory_to_file, get_memory_data, reload_memory_data, import_memory_data,
clear_memory_data, create/delete/update_memory_fact) and regular keyword param
to MemoryUpdater.update_memory + update_memory_from_conversation, propagating
it to every storage load/save/reload call.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(memory): capture user_id at enqueue time for async-safe thread isolation

Add user_id field to ConversationContext and MemoryUpdateQueue.add() so the
user identity is stored explicitly at request time, before threading.Timer
fires on a different thread where ContextVar values do not propagate.
MemoryMiddleware.after_agent() now calls get_effective_user_id() at enqueue
time and passes the value through to updater.update_memory().

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(isolation): wire user_id through all Paths and memory callsites

Pass user_id=get_effective_user_id() at every callsite that invokes
Paths methods or memory functions, enabling per-user filesystem isolation
throughout the harness and app layers.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(migration): add idempotent script for per-user data migration

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* docs: update CLAUDE.md and config docs for per-user isolation

* feat(events): add pagination to list_messages_by_run on all store backends

Replicates the existing before_seq/after_seq/limit cursor-pagination pattern
from list_messages onto list_messages_by_run across the abstract interface,
MemoryRunEventStore, JsonlRunEventStore, and DbRunEventStore.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(api): add GET /api/runs/{run_id}/messages with cursor pagination

New endpoint resolves thread_id from the run record and delegates to
RunEventStore.list_messages_by_run for cursor-based pagination.
Ownership is enforced implicitly via RunStore.get() user filtering.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(api): add GET /api/runs/{run_id}/feedback

Delegates to FeedbackRepository.list_by_run via the existing _resolve_run
helper; includes tests for success, 404, empty list, and 503 (no DB).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(api): retrofit cursor pagination onto GET /threads/{tid}/runs/{rid}/messages

Replace bare list[dict] response with {data: [...], has_more: bool} envelope,
forwarding limit/before_seq/after_seq query params to the event store.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* docs: add run-level API endpoints to CLAUDE.md routers table

* refactor(threads): remove event-store message loader and feedback from state/history endpoints

State and history endpoints now return messages purely from the
checkpointer's channel_values. The _get_event_store_messages helper
(which loaded the full event-store transcript with feedback attached)
is removed along with its tests. Frontend will use the dedicated
GET /api/runs/{run_id}/messages and /feedback endpoints instead.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com>
Co-authored-by: DanielWalnut <45447813+hetaoBackend@users.noreply.github.com>
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
Co-authored-by: JilongSun <965640067@qq.com>
Co-authored-by: jie <49781832+stan-fu@users.noreply.github.com>
Co-authored-by: cooper <cooperfu@tencent.com>
Co-authored-by: yangzheli <43645580+yangzheli@users.noreply.github.com>
Co-authored-by: greatmengqi <chenmengqi.0376@gmail.com>
Co-authored-by: greatmengqi <chenmengqi.0376@bytedance.com>
2026-04-26 11:13:01 +08:00