* feat(persistence): support custom postgres schema
* fix(persistence): address CI lint/test failures and review feedback
- Map missing psycopg import to actionable POSTGRES_INSTALL guidance in
sync/async schema-creation helpers
- Accept SQLAlchemy compound DSN schemes (postgresql+asyncpg) when
injecting search_path, normalizing to a libpq-consumable DSN
- Guard keyword-DSN tests with importorskip so they skip without psycopg
- Set database=None in sync checkpointer none-fix test to avoid MagicMock
backend resolution
- Apply ruff import sort and format
* fix(persistence): address pg-schema review feedback
- Restrict postgres_schema regex to lowercase-only so the quoted CREATE
SCHEMA matches the unquoted search_path (PG case-folds it), fixing the
mixed-case bug where tables silently fell back to public.
- Replace shlex.join/split with libpq-correct backslash escaping for the
options parameter so values containing spaces survive intact.
- Add normalize_libpq_dsn() and route the async checkpointer pool through
dsn_with_search_path() so a +asyncpg suffix is stripped and existing DSN
options (e.g. statement_timeout) are merged instead of overridden.
- Extract shared ensure_postgres_schema()/ensure_postgres_schema_async()
helpers (mapping missing psycopg to the install hint) used by all four
provider sites.
- Tests: reject mixed-case schemas, preserve space-containing libpq option,
cover normalize_libpq_dsn, and assert pool search_path via DSN.
* fix(persistence): align pg-schema test with merged store API
The main merge moved the sync Store factory to the single-path
_resolve_store_config/_sync_store_cm design, dropping the PR's
_sync_store_from_database helper. The integration test still imported
the removed symbol, breaking test collection (backend-unit-tests).
Resolve the store config from a DatabaseConfig and drive it through
_sync_store_cm instead.
* fix(persistence): address pg-schema review feedback
- reject trailing/leading whitespace in postgres_schema via re.fullmatch
(a $-anchored re.match let "deerflow\n" through, silently landing tables
in public)
- re-escape all whitespace (TAB/CR/LF) when re-joining libpq options so a
caller's pre-existing options value round-trips losslessly
- re-validate the identifier inside create_schema_sql as defense-in-depth
at the SQL-emitting boundary
- accept the postgres:// short scheme in the alembic search_path injection
- close the sync psycopg connection explicitly (psycopg3 __exit__ does not
close()), mirroring the async path
- drop the partial checkpointer/store reset on a database config change;
database is restart-required and the ORM engine is not rebuilt, so a
partial reset would half-migrate the deployment
* docs(config): complete the postgres_schema migration checklist
Address PR review (P1): the documented `public`->schema migration only
moved runs, run_events, threads_meta, feedback, and users. That strands
every other DeerFlow-owned table -- the four channel_* tables, both
scheduled_* tables, agents, and (critically) alembic_version -- in
`public`. On restart bootstrap treats the partially-populated target
schema as unversioned, re-baselines it, and replays migrations while the
real rows stay invisible in `public`.
List the full owned set explicitly, call out alembic_version as required,
and keep the "discover the rest" query for version-drift safety.
* refactor(checkpointer): drop test-only _sync_checkpointer_from_database
Address PR review: the helper was only reached by the env-gated
integration test and re-implemented the DatabaseConfig->CheckpointerConfig
backend resolution that _resolve_checkpointer_config already owns, so a
future backend added there would silently miss this path. Mirror the store
side of the same test, which reuses the production path directly:
_resolve_checkpointer_config(...) + _sync_checkpointer_cm(...).
* refactor: extract shared utils to break harness→app cross-layer imports
Move _validate_skill_frontmatter to src/skills/validation.py and
CONVERTIBLE_EXTENSIONS + convert_file_to_markdown to src/utils/file_conversion.py.
This eliminates the two reverse dependencies from client.py (harness layer)
into gateway/routers/ (app layer), preparing for the harness/app package split.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* refactor: split backend/src into harness (deerflow.*) and app (app.*)
Physically split the monolithic backend/src/ package into two layers:
- **Harness** (`packages/harness/deerflow/`): publishable agent framework
package with import prefix `deerflow.*`. Contains agents, sandbox, tools,
models, MCP, skills, config, and all core infrastructure.
- **App** (`app/`): unpublished application code with import prefix `app.*`.
Contains gateway (FastAPI REST API) and channels (IM integrations).
Key changes:
- Move 13 harness modules to packages/harness/deerflow/ via git mv
- Move gateway + channels to app/ via git mv
- Rename all imports: src.* → deerflow.* (harness) / app.* (app layer)
- Set up uv workspace with deerflow-harness as workspace member
- Update langgraph.json, config.example.yaml, all scripts, Docker files
- Add build-system (hatchling) to harness pyproject.toml
- Add PYTHONPATH=. to gateway startup commands for app.* resolution
- Update ruff.toml with known-first-party for import sorting
- Update all documentation to reflect new directory structure
Boundary rule enforced: harness code never imports from app.
All 429 tests pass. Lint clean.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* chore: add harness→app boundary check test and update docs
Add test_harness_boundary.py that scans all Python files in
packages/harness/deerflow/ and fails if any `from app.*` or
`import app.*` statement is found. This enforces the architectural
rule that the harness layer never depends on the app layer.
Update CLAUDE.md to document the harness/app split architecture,
import conventions, and the boundary enforcement test.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* feat: add config versioning with auto-upgrade on startup
When config.example.yaml schema changes, developers' local config.yaml
files can silently become outdated. This adds a config_version field and
auto-upgrade mechanism so breaking changes (like src.* → deerflow.*
renames) are applied automatically before services start.
- Add config_version: 1 to config.example.yaml
- Add startup version check warning in AppConfig.from_file()
- Add scripts/config-upgrade.sh with migration registry for value replacements
- Add `make config-upgrade` target
- Auto-run config-upgrade in serve.sh and start-daemon.sh before starting services
- Add config error hints in service failure messages
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* fix comments
* fix: update src.* import in test_sandbox_tools_security to deerflow.*
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* fix: handle empty config and search parent dirs for config.example.yaml
Address Copilot review comments on PR #1131:
- Guard against yaml.safe_load() returning None for empty config files
- Search parent directories for config.example.yaml instead of only
looking next to config.yaml, fixing detection in common setups
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* fix: correct skills root path depth and config_version type coercion
- loader.py: fix get_skills_root_path() to use 5 parent levels (was 3)
after harness split, file lives at packages/harness/deerflow/skills/
so parent×3 resolved to backend/packages/harness/ instead of backend/
- app_config.py: coerce config_version to int() before comparison in
_check_config_version() to prevent TypeError when YAML stores value
as string (e.g. config_version: "1")
- tests: add regression tests for both fixes
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
* fix: update test imports from src.* to deerflow.*/app.* after harness refactor
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
---------
Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
