mirror of
https://github.com/bytedance/deer-flow.git
synced 2026-07-30 18:05:59 +00:00
8 Commits
| Author | SHA1 | Message | Date | |
|---|---|---|---|---|
Lee minjing
|
e225ad57d7
|
feat(uploads): lazy-load historical files via list_uploaded_files tool (#4174)
* feat(uploads): lazy-load historical files via list_uploaded_files tool
Replace per-turn injection of all historical upload metadata with on-demand
discovery via a new `list_uploaded_files` built-in tool, following the same
deferred-discovery pattern used by skills.
- Rename <uploaded_files> block to <current_uploads> (current-run files only)
- Add list_uploaded_files tool with include_outline: bool|list[str]
- Extract outline helpers to shared deerflow/utils/file_outline.py
- Update system prompt to reflect lazy-loading behaviour
- Historical file scan removed from UploadsMiddleware.before_agent()
Co-Authored-By: Claude <noreply@anthropic.com>
* fix(uploads): clear uploaded_files state when no new files in current turn
When before_agent() returns None on empty turns, the LastValue
uploaded_files field retains the previous turn's filenames.
list_uploaded_files then incorrectly excludes those files as
"current-run" files, making them invisible until the next upload.
Fix: return {"uploaded_files": []} instead of None to explicitly
clear state. Add two-turn regression test covering the exact
scenario from review feedback.
Co-Authored-By: Claude <noreply@anthropic.com>
* fix: resolve CI lint errors and stale test assertion from merge
- Split long prompt line to fit 240-char limit
- Add missing `Any` import in list_uploaded_files_tool
- Remove unused `re` import in file_conversion (outline code moved)
- Remove unused `os` import in middleware test
- Fix test assertion: <uploaded_files> → <current_uploads> after main merge
Co-Authored-By: Claude <noreply@anthropic.com>
* fix: resolve CI lint errors and stale test assertion from merge
- Split long prompt line to fit 240-char limit
- Add missing `Any` import in list_uploaded_files_tool
- Remove unused `re` import in file_conversion (outline code moved)
- Remove unused `os` import in middleware test
- Fix test assertion: <uploaded_files> → <current_uploads> after main merge
Co-Authored-By: Claude <noreply@anthropic.com>
* fix: add current_uploads to input sanitization exempt tags
The lazy-loading PR renamed <uploaded_files> to <current_uploads>.
The anti-drift guard scans all framework XML blocks and requires each
to be either blocked or explicitly exempted. current_uploads wraps
trusted server-generated file metadata, not user input, so it belongs
in the exempt set.
Co-Authored-By: Claude <noreply@anthropic.com>
* test: regenerate replay golden after uploaded_files state change
before_agent now returns {"uploaded_files": []} instead of None,
adding uploaded_files to SSE values events. Regenerated via
DEERFLOW_WRITE_GOLDEN=1.
Co-Authored-By: Claude <noreply@anthropic.com>
* fix: review feedback — memory pipeline, stale tags, state clearing, nits
- Match both tags in memory stripping pipeline (uploaded_files|current_uploads)
- Remove stale uploaded_files from _BLOCKED_TAG_NAMES
- Clear uploaded_files on all before_agent early-return paths
- Fix ponytail: stray word in file_conversion re-export comment
- Remove dead total_omitted branch in _format_omitted_summary
- ruff format fixes
Co-Authored-By: Claude <noreply@anthropic.com>
* fix: block current_uploads, sanitize only original user content
Per review feedback: instead of exempting <current_uploads> (which
allows user forgery), move it to _BLOCKED_TAG_NAMES and change
InputSanitizationMiddleware._process_request to scan only the
original user content (ORIGINAL_USER_CONTENT_KEY) when available.
Server-injected trusted blocks are no longer checked against the
blocked-tag denylist.
Co-Authored-By: Claude <noreply@anthropic.com>
* docs: clarify fallback reason in input sanitization comment
Co-Authored-By: Claude <noreply@anthropic.com>
* @
fix: third-round review feedback — state visibility, sanitization, regex, nits
- list_uploaded_files_tool: logger.warning instead of silent try/except
on runtime.state read failure (High)
- input_sanitization_middleware: _extract_text_from_content skips empty
text blocks to match message_content_to_text behaviour; rfind fallback
path logs warning for observability (Medium)
- memory pipeline regexes: backreference (?P<tag>)(?P=tag) in
message_processing.py and prompt.py (Low)
- file_conversion.py: re-export moved to top of file (Low)
- Tests: middleware→tool state bridge test; integrated forged-tag +
multimodal sanitization tests
PR #4174 — Follow-up issues: #4212, #4213, #4214
Co-Authored-By: Claude <noreply@anthropic.com>
@
* @
fix: 4th-round review — denylist, sanitization, scandir, nits
- Add "uploaded_files" back to _BLOCKED_TAG_NAMES (old tag still processed by
deermem; user forgery must be escaped) (consistency)
- Fix inaccurate rfind-fallback comment: UploadsMiddleware keeps string as
string, fallback is unreachable for strings (doc fix)
- Distinguish "empty string key" (upload without text) from "non-string key"
(caller forgery) so empty-text uploads never escape the server block (edge)
- Merge dual os.scandir(uploads_dir) calls into one list re-use (minor)
- Add comment on .md sibling skip known limitation: user-uploaded .md files
whose stem collides with a converted doc are hidden (boundary, no code change)
Co-Authored-By: Claude <noreply@anthropic.com>
@
* @
fix: tighten rfind-failure fallback — distinguish server blocks from user blocks
When _extract_text_from_content and message_content_to_text disagree on
multimodal list content and rfind fails, use content[0] (server-injected
<current_uploads> block) vs content[1:] (user blocks) to sanitize only
user blocks. Raw strings and non-standard dict blocks that
_extract_text_from_content misses are now also sanitized.
Non-distinguishable paths (< 2 text blocks, non-list content) still
degrade to full sanitization (safe — server block may be escaped but
user forgery never leaks). All fallback paths log via logger.warning.
Decision 18 / willem-bd 4th-round comment #3
Co-Authored-By: Claude <noreply@anthropic.com>
@
* @
fix: correct comments referencing text_blocks → content in rfind fallback
Co-Authored-By: Claude <noreply@anthropic.com>
@
* fix: 5th-round review — dead code, subagent gating, integration test, perf, consistency
- Delete unreachable ORIGINAL_USER_CONTENT_KEY guard in rfind fallback
branch (original_user_content guaranteed non-empty str at that point)
- Remove list_uploaded_files from BUILTIN_TOOLS; add include_upload_tool
param to get_available_tools(), default True; task_tool.py passes False
so subagents no longer receive a tool whose state exclusion is broken
- Add integration test exercising real create_agent graph (not mocked
runtime.state) to verify LangGraph propagates before_agent state writes
into ToolRuntime.state during same-turn tool calls
- Cache DirEntry.stat() st_size in candidates tuple to avoid second
per-file syscall in the rendering loop
- Make the upload-tag pre-check case-insensitive (content_str.lower())
to match _UPLOAD_BLOCK_RE re.IGNORECASE
PR #4174 — willem-bd 5th-round review items #1-#5
Co-Authored-By: Claude <noreply@anthropic.com>
* fix(channels): pass files metadata through _human_input_message() for IM uploads
_human_input_message() was not passing additional_kwargs.files to the
downstream message. UploadsMiddleware read no files, wrote
uploaded_files=[], and list_uploaded_files reported same-run IM
attachments as historical files (fancyboi999 repro).
Fix: add files parameter to _human_input_message(), call site passes
files=uploaded. Regression test locks the contract.
Co-Authored-By: Claude <noreply@anthropic.com>
* fix(channels): remove legacy <uploaded_files> manual prepend to fix double-injection regression
Commit 8d86dbf6 added files= pass-through to UploadsMiddleware but
left the manual _format_uploaded_files_block() prepend in place.
Every IM attachment reached the model twice — once via the legacy
<uploaded_files> block and once via <current_uploads>.
This commit removes the manual prepend and the now-dead
_format_uploaded_files_block() function. UploadsMiddleware is the
sole upload-context producer for both IM and web paths.
Reported-by: fancyboi999 (PR review)
Co-Authored-By: Claude <noreply@anthropic.com>
* docs: update #4212 issue body to reflect completed fixes and narrowed remaining scope
* chore: remove temporary scratch file
* fix(middleware): neutralize user-derived values inside <current_uploads> block
Upload-derived filenames, paths, outline titles, and preview text are
interpolated verbatim inside the trusted <current_uploads> wrapper,
which InputSanitizationMiddleware exempts from sanitization. A crafted
filename or document heading containing blocked authority tags would
bypass the guardrail and enter model context as trusted framework data.
Fix: call neutralize_untrusted_tags() on all four user-derived values
inside _format_file_entry(), preserving the outer <current_uploads>
wrapper untouched.
Reported-by: fancyboi999 (P1 security review)
Co-Authored-By: Claude <noreply@anthropic.com>
* fix(middleware): neutralize extension labels in omitted-file summary
Files exceeding the 10-item context cap bypass _format_file_entry().
Their extensions, derived from user-controlled filenames via
_extension_label(), were interpolated verbatim into the trusted
<current_uploads> wrapper — another path for blocked authority tags
to escape the guardrail.
Fix: neutralize extension values inside _extension_label(), the
single extraction point for all extension labels.
Reported-by: fancyboi999 (P1 security review)
Co-Authored-By: Claude <noreply@anthropic.com>
* fix(tools): neutralize user-derived values in list_uploaded_files tool result
Apply neutralize_untrusted_tags() to every model-visible user-derived value
returned by list_uploaded_files: filename, virtual path, extension, outline
titles, outline preview lines, and omitted-file extension summary.
This closes the last remaining injection bypass in the upload lazy-loading
path - the <current_uploads> block and its omitted summary were already
neutralized (previous commits), but the list_uploaded_files tool produced
a second exit for the same attacker-controlled metadata that
ToolResultSanitizationMiddleware did not cover.
Co-Authored-By: Claude <noreply@anthropic.com>
* fix(tests): add missing include_upload_tool=False to task_tool mock assertions
PR #4174 added include_upload_tool parameter to get_available_tools().
task_tool.py correctly passes include_upload_tool=False for subagents
but 5 existing tests' assert_called_once_with expectations were not
updated, causing CI failures.
Co-Authored-By: Claude <noreply@anthropic.com>
---------
Co-authored-by: Claude <noreply@anthropic.com>
|
||
|
Aari
|
bc9c027a54
|
fix(uploads): claim the converted markdown filename before writing it (#4288)
* fix(uploads): claim the converted markdown filename before writing it * doc(changelog): record the converted-markdown filename collision fix Covers both surfaces that report markdown_file: the gateway uploads route and DeerFlowClient.upload_files. * fix(uploads): release the claimed markdown name when conversion fails Claiming the companion .md name before conversion means a conversion that writes nothing leaves the name reserved for the rest of the request, so a later same-stem upload is renamed against a name nothing occupies. Uploading notes.docx (conversion fails) + notes.md stored the user's file as notes_1.md with no notes.md on disk, where main kept notes.md. Discard the claim when conversion returns None, at both call sites that pre-claim it. Covers both victims: a later same-stem .md upload, and the next convertible's companion. |
||
|
Syed Osama Ali Shah
|
d9305989f3
|
fix: don't flag outline as truncated at exactly MAX_OUTLINE_ENTRIES headings (#3856)
extract_outline appended the {truncated: True} sentinel as soon as len(outline) >= MAX_OUTLINE_ENTRIES, i.e. right after the 50th heading, before knowing whether a 51st exists. A document with exactly 50 headings was therefore reported as truncated, and uploads_middleware injected a misleading 'showing first 50 headings' hint into the agent's context. Use a lookahead: only mark truncated once a heading beyond the limit is actually seen, then drop that extra entry. Adds an exact-boundary regression test.
|
||
|
Hinotobi
|
80e210f5bb
|
[security] fix(uploads): require explicit opt-in for host-side document conversion (#2332)
* fix: disable host-side upload conversion by default * fix: address PR review comments on upload conversion gate |
||
|
SHIYAO ZHANG
|
163121d327
|
fix(uploads): handle split-bold headings and ** ** artefacts in extract_outline (#1838)
* feat(uploads): guide agent to use grep/glob/read_file for uploaded documents Add workflow guidance to the <uploaded_files> context block so the agent knows to use grep and glob (added in #1784) alongside read_file when working with uploaded documents, rather than falling back to web search. This is the final piece of the three-PR PDF agentic search pipeline: - PR1 (#1727): pymupdf4llm converter produces structured Markdown with headings - PR2 (#1738): document outline injected into agent context with line numbers - PR3 (this): agent guided to use outline + grep + read_file workflow * feat(uploads): add file-first priority and fallback guidance to uploaded_files context * fix(uploads): handle split-bold headings and ** ** artefacts in extract_outline - Add _clean_bold_title() to merge adjacent bold spans (** **) produced by pymupdf4llm when bold text crosses span boundaries - Add _SPLIT_BOLD_HEADING_RE (Style 3) to recognise **<num>** **<title>** headings common in academic papers; excludes pure-number table headers and rows with more than 4 bold blocks - When outline is empty, read first 5 non-empty lines of the .md as a content preview and surface a grep hint in the agent context - Update _format_file_entry to render the preview + grep hint instead of silently omitting the outline section - Add 3 new extract_outline tests and 2 new middleware tests (65 total) * fix(uploads): address Copilot review comments on extract_outline regex - Replace ASCII [A-Za-z] guard with negative lookahead to support non-ASCII titles (e.g. **1** **概述**); pure-numeric/punctuation blocks still excluded - Replace .+ with [^*]+ and cap repetition at {0,2} (four blocks total) to keep _SPLIT_BOLD_HEADING_RE linear and avoid ReDoS on malformed input - Remove now-redundant len(blocks) <= 4 code-level check (enforced by regex) - Log debug message with exc_info when preview extraction fails |
||
|
SHIYAO ZHANG
|
ddfc988bef
|
feat(uploads): add pymupdf4llm PDF converter with auto-fallback and async offload (#1727)
* feat(uploads): add pymupdf4llm PDF converter with auto-fallback and async offload - Introduce pymupdf4llm as an optional PDF converter with better heading detection and table preservation than MarkItDown - Auto mode: prefer pymupdf4llm when installed; fall back to MarkItDown when output is suspiciously sparse (image-based / scanned PDFs) - Sparsity check uses chars-per-page (< 50 chars/page) rather than an absolute threshold, correctly handling both short and long documents - Large files (> 1 MB) are offloaded to asyncio.to_thread() to avoid blocking the event loop (related: #1569) - Add UploadsConfig with pdf_converter field (auto/pymupdf4llm/markitdown) - Add pymupdf4llm as optional dependency: pip install deerflow-harness[pymupdf] - Add 14 unit tests covering sparsity heuristic, routing logic, and async path * fix(uploads): address Copilot review comments on PDF converter - Fix docstring: MIN_CHARS_PYMUPDF -> _MIN_CHARS_PER_PAGE (typo) - Fix file handle leak: wrap pymupdf.open in try/finally to ensure doc.close() - Fix silent fallback gap: _convert_pdf_with_pymupdf4llm now catches all conversion exceptions (not just ImportError), so encrypted/corrupt PDFs fall back to MarkItDown instead of propagating - Tighten type: pdf_converter field changed from str to Literal[auto|pymupdf4llm|markitdown] - Normalize config value: _get_pdf_converter() strips and lowercases the raw config string, warns and falls back to 'auto' on unknown values |
||
|
SHIYAO ZHANG
|
5ff230eafd
|
feat(uploads): inject document outline into agent context for converted files (#1738)
* feat(uploads): inject document outline into agent context for converted files
Extract headings from converted .md files and inject them into the
<uploaded_files> context block so the agent can navigate large documents
by line number before reading.
- Add `extract_outline()` to `file_conversion.py`: recognises standard
Markdown headings (#/##/###) and SEC-style bold structural headings
(**ITEM N. BUSINESS**, **PART II**); caps at 50 entries; excludes
cover-page boilerplate (WASHINGTON DC, CURRENT REPORT, SIGNATURES)
- Add `_extract_outline_for_file()` helper in `uploads_middleware.py`:
looks for a sibling `.md` file produced by the conversion pipeline
- Update `UploadsMiddleware._create_files_message()` to render the outline
under each file entry with `L{line}: {title}` format and a `read_file`
prompt for range-based reading
- Tests: 10 new tests for `extract_outline()`, 4 new tests for outline
injection in `UploadsMiddleware`; existing test updated for new `outline`
field in `uploaded_files` state
Partially addresses #1647 (agent ignores uploaded files).
* fix(uploads): stream outline file reads and strip inline bold from heading titles
- Switch extract_outline() from read_text().splitlines() to open()+line iteration
so large converted documents are not loaded into memory on every agent turn;
exits as soon as MAX_OUTLINE_ENTRIES is reached (Copilot suggestion)
- Strip **...** wrapper from standard Markdown heading titles before appending
to outline so agent context stays clean (e.g. "## **Overview**" → "Overview")
(Copilot suggestion)
- Remove unused pathlib.Path import and fix import sort order in test_file_conversion.py
to satisfy ruff CI lint
* fix(uploads): show truncation hint when outline exceeds MAX_OUTLINE_ENTRIES
When extract_outline() hits the cap it now appends a sentinel entry
{"truncated": True} instead of silently dropping the rest of the headings.
UploadsMiddleware reads the sentinel and renders a hint line:
... (showing first 50 headings; use `read_file` to explore further)
Without this the agent had no way to know the outline was incomplete and
would treat the first 50 headings as the full document structure.
* fix(uploads): fall back to configurable.thread_id when runtime.context lacks thread_id
runtime.context does not always carry thread_id (depends on LangGraph
invocation path). ThreadDataMiddleware already falls back to
get_config().configurable.thread_id — apply the same pattern so
UploadsMiddleware can resolve the uploads directory and attach outlines
in all invocation paths.
* style: apply ruff format
---------
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
|
||
|
DanielWalnut
|
76803b826f
|
refactor: split backend into harness (deerflow.*) and app (app.*) (#1131)
* refactor: extract shared utils to break harness→app cross-layer imports Move _validate_skill_frontmatter to src/skills/validation.py and CONVERTIBLE_EXTENSIONS + convert_file_to_markdown to src/utils/file_conversion.py. This eliminates the two reverse dependencies from client.py (harness layer) into gateway/routers/ (app layer), preparing for the harness/app package split. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * refactor: split backend/src into harness (deerflow.*) and app (app.*) Physically split the monolithic backend/src/ package into two layers: - **Harness** (`packages/harness/deerflow/`): publishable agent framework package with import prefix `deerflow.*`. Contains agents, sandbox, tools, models, MCP, skills, config, and all core infrastructure. - **App** (`app/`): unpublished application code with import prefix `app.*`. Contains gateway (FastAPI REST API) and channels (IM integrations). Key changes: - Move 13 harness modules to packages/harness/deerflow/ via git mv - Move gateway + channels to app/ via git mv - Rename all imports: src.* → deerflow.* (harness) / app.* (app layer) - Set up uv workspace with deerflow-harness as workspace member - Update langgraph.json, config.example.yaml, all scripts, Docker files - Add build-system (hatchling) to harness pyproject.toml - Add PYTHONPATH=. to gateway startup commands for app.* resolution - Update ruff.toml with known-first-party for import sorting - Update all documentation to reflect new directory structure Boundary rule enforced: harness code never imports from app. All 429 tests pass. Lint clean. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * chore: add harness→app boundary check test and update docs Add test_harness_boundary.py that scans all Python files in packages/harness/deerflow/ and fails if any `from app.*` or `import app.*` statement is found. This enforces the architectural rule that the harness layer never depends on the app layer. Update CLAUDE.md to document the harness/app split architecture, import conventions, and the boundary enforcement test. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * feat: add config versioning with auto-upgrade on startup When config.example.yaml schema changes, developers' local config.yaml files can silently become outdated. This adds a config_version field and auto-upgrade mechanism so breaking changes (like src.* → deerflow.* renames) are applied automatically before services start. - Add config_version: 1 to config.example.yaml - Add startup version check warning in AppConfig.from_file() - Add scripts/config-upgrade.sh with migration registry for value replacements - Add `make config-upgrade` target - Auto-run config-upgrade in serve.sh and start-daemon.sh before starting services - Add config error hints in service failure messages Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * fix comments * fix: update src.* import in test_sandbox_tools_security to deerflow.* Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * fix: handle empty config and search parent dirs for config.example.yaml Address Copilot review comments on PR #1131: - Guard against yaml.safe_load() returning None for empty config files - Search parent directories for config.example.yaml instead of only looking next to config.yaml, fixing detection in common setups Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * fix: correct skills root path depth and config_version type coercion - loader.py: fix get_skills_root_path() to use 5 parent levels (was 3) after harness split, file lives at packages/harness/deerflow/skills/ so parent×3 resolved to backend/packages/harness/ instead of backend/ - app_config.py: coerce config_version to int() before comparison in _check_config_version() to prevent TypeError when YAML stores value as string (e.g. config_version: "1") - tests: add regression tests for both fixes Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> * fix: update test imports from src.* to deerflow.*/app.* after harness refactor Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com> |