37 Commits

Author SHA1 Message Date
qin-chenghan
795af20a6b
feat(memory): built-in FTS5/BM25 retrieval adapter (#4360)
* feat(memory): integrate FTS5 retrieval adapter

* deps: add jieba as default dependency for Chinese tokenization

Without jieba, FTS5 unicode61 tokenizer treats entire Chinese sentences
as single tokens, making single-character or sub-phrase searches
impossible (e.g. '吃' or '油泼面' returns 0 hits against
'用户喜欢吃油泼面'). jieba segments Chinese text into meaningful tokens
before indexing.

* fix(memory): avoid treating hyphens as FTS5 operators

* feat(memory): make Chinese tokenization optional

* fix(memory): warm every requested retrieval scope

* fix(memory): close retrieval resources on shutdown

* fix(memory): close backend when shutdown flush fails

* fix(memory): recreate corrupt retrieval index

* fix(memory): tolerate partial retrieval rebuilds

* fix(memory): warm retrieval index in background

* fix(memory): preserve shutdown flush budget

* fix(memory): stop retrying partial lazy rebuilds

* fix(memory): close retrieval through storage

* refactor(memory): simplify retrieval scope limit

* docs(memory): clarify retrieval shutdown lifecycle

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-07-27 23:17:18 +08:00
Ryker_Feng
7aa314b4c1
feat: add Lark CLI integration (#3971)
* feat: add lark cli integration

* fix: polish lark integration actions

* feat: support lark incremental permissions

* fix: detect lark authorization completion

* fix: harden lark integration install

* feat: expand lark auth scopes and reuse host auth in sandbox

Default lark auth to least-privilege (recommend=false, base sign-in only)
and expose the full set of lark-cli --domain business domains as native
--domain grants instead of a 4-domain read-only mapping. Resolve the
skill pack from the latest larksuite/cli GitHub release at install time
with content-hash integrity, and surface version/runtime drift in status.

Share the per-user lark-cli config/data profile between the Gateway
Settings auth flow and agent conversations by mounting the integration
dirs into the AIO sandbox and injecting the matching env for lark-cli
commands, with an allowlisted extra_mounts path in the provisioner/K8s
backend and traversal guards on integration paths.

* style: fix lint issues from ruff and prettier

Sort imports in the provisioner PVC test and re-wrap two long i18n
description strings to satisfy backend ruff and frontend prettier CI.

* fix(lark): address managed integration review feedback

* fix(frontend): stabilize integrations settings e2e

* test(sandbox): isolate remote backend legacy visibility check

* test: fix backend unit failures after merge

* Harden Lark integration review fixes

* Format Lark integration E2E test

* fix(lark): harden sandbox credential exposure and status disclosure

Address willem_bd's security review on PR #3971:

- Mount the per-user lark-cli config dir (long-lived appSecret) read-only
  into the AIO sandbox; only the refreshable-token data dir stays writable.
- Redact host filesystem paths (install_path, cli.path) from
  GET /lark/status and the config/auth complete responses for non-admin
  callers, fail-closed on any auth error.
- Document the npm postinstall trade-off (--ignore-scripts is not viable
  because @larksuite/cli fetches its platform binary in postinstall).
- Document the sandbox credential trust boundary in AGENTS.md and README,
  pointing at the sidecar-broker follow-up (#4338).

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-07-26 08:09:17 +08:00
Daoyuan Li
d2b5f884e3
fix(channels): buffer GitHub follow-ups during busy runs (#4133)
Queue comments received while a run is active, then submit one deduplicated follow-up after it finishes. Failed drains are requeued and watcher tasks stop cleanly with the channel manager.
2026-07-24 22:41:07 +08:00
lllyfff
01a89f2379
[feat] memory: pluggable MemoryManager interface for backend onboarding (#4326)
* refactor(memory): pluggable MemoryManager interface for backend onboarding

Optimize the MemoryManager interface layer so new backends (mem0/openviking)
onboard with less code and the contract stays stable as capabilities are
added. A minimal backend now implements only from_config + add + get_context
(verified by test_memory_manager_interface.py::_MinimalBackend onboarding via
the factory); the factory no longer knows a backend's private hooks.

- MemoryManager: ABC -> pydantic BaseModel; three-tier methods (tier-1
  add/get_context abstract; tier-2 management defaults; tier-3 optional hooks
  warm/reload/fact + on_pre_compress/on_turn_start). Dropped 3 self-serving
  hooks. 6 hasattr probe sites -> direct call + try/except NotImplementedError.
- from_config classmethod: factory thins to resolve + inject storage_path +
  collect host hooks + call from_config; DeerMem-specific hook consumption
  moved from factory to DeerMem.from_config.
- Invariants: @model_validator (mode='tool' requires search via supports_search
  ClassVar); DeerMemConfig storage_path-is-file check moved here from factory.
- Async: aadd/aget_context/asearch default to the sync path (speculative).
- Callbacks: MemoryCallbacks + LangfuseMemoryCallbacks; on_memory_llm_call
  subsumes tracing_callback (same signature/timing/mutation); deleted the
  tracing_callback field. DeerMem decoupled from langfuse (portability).
- noop keeps read-op empty overrides (avoids router 500s on the
  disable-memory-via-noop path); only delete/export inherit the base raise.

Behavior preserved: 661 passed / 13 skipped. Docs: backends/README.md rewritten
(three-tier + from_config + callbacks); samples README updated; removed stale
private doc paths.

Co-Authored-By: Claude <noreply@anthropic.com>

* fix(memory): 501 on unsupported read/manage endpoints + accurate warm log

Review follow-up on the three-tier MemoryManager refactor.

- Read/manage endpoints (GET /memory, /memory/export, /memory/status,
  DELETE /memory, POST /memory/import) and the /memory/reload fallback now
  catch NotImplementedError -> 501, matching the fact-CRUD endpoints. The
  hasattr->try/except migration had skipped these: they were @abstractmethod
  before (every backend implemented them, so they never raised), so once they
  became tier-2 default-raise a minimal backend (only add + get_context) hit a
  raw 500 -- there is no global NotImplementedError handler. get_memory is
  shared via _get_memory_or_501 (covers /memory, export, status, reload
  fallback). noop is unchanged: its read-op empty overrides never raise.
- warm() base default returns None (tri-state: True=warmed, False=failed,
  None=nothing to warm) so the Gateway lifespan logs "skipping" for a
  non-DeerMem backend (e.g. noop) instead of the inaccurate "warmed
  successfully" it never earned. DeerMem.warm keeps True/False.
- Tests: 6 router 501 tests (read/manage + reload fallback) + 2 lifespan
  warm-log tests (None->skipping, False->warning); conformance/pluggable
  assert warm() is None.

705 passed / 13 skipped; lint clean.

Co-Authored-By: Claude <noreply@anthropic.com>

* fix(memory): review follow-ups - search-flag consistency, client reload, backend_config purity

Address review feedback on the three-tier MemoryManager refactor:

- [Medium] supports_search/search drift: the invariant now requires the
  supports_search ClassVar flag to MATCH whether search() is actually
  overridden (type(self).search is not MemoryManager.search), so the flag
  can't drift from the impl. Catches both directions at instantiation: a
  backend that overrides search() but forgets supports_search=True (was a
  misleading tool-mode rejection), and one that sets the flag without
  overriding (was a runtime NotImplementedError on the first memory_search).
  noop sets supports_search=True to match its search() override. Conformance
  adds drift + consistent-backend tests.
- [Low] client.reload_memory fallback: wrap the get_memory fallback so a
  minimal backend (only add + get_context) surfaces a clean NotImplementedError
  ("implements neither reload_memory nor get_memory") instead of an uncaught
  propagation -- mirrors the router's 501. Test added.
- [Low] backend_config purity: DeerMem.from_config restores backend_config to
  the pure data the host passed after model_post_init parses the injected hooks
  into DeerMemConfig (self._config, PrivateAttr); the field stays serializable
  (no callables/LLM) and matches the README ("host hooks NOT in backend_config").
  Test asserts purity + hooks wired.
- [Low] CHANGELOG: breaking-change note that mode='tool' + non-search backend
  now fails fast at startup (was silently empty) so operators recognize it on
  upgrade.
- [Nit] .gitignore: drop the env-specific .tmp-pytest/ entry (--basetemp is
  local-only, not make test/CI).

709 passed / 13 skipped; lint clean.

Co-Authored-By: Claude <noreply@anthropic.com>

* docs(changelog): correct memory tool-mode fail-fast note

The CHANGELOG entry said mode='tool' + a non-search backend "(e.g. noop)"
fails fast at startup, but noop overrides search() (returns []) and sets
supports_search=True (required by the consistency invariant), so noop IS
search-capable and noop+tool does NOT fail fast. The fail-fast only affects a
custom backend that onboards without overriding search(). Reworded to drop the
misleading noop example and state both shipping backends implement search().

Co-Authored-By: Claude <noreply@anthropic.com>

---------

Co-authored-by: Claude <noreply@anthropic.com>
2026-07-22 14:40:57 +08:00
Ryker_Feng
fa496c0c8d
feat(browser): add agentic browser control (#4187)
* feat(browser): add agentic browser control

* fix(frontend): format browser view changes

* fix(browser): keep browser optional and isolate sidecar layout

* fix(browser): address PR review security and IME findings

- Nginx: add a browser-stream WebSocket location before the generic
  /api/threads regex so Live upgrades instead of downgrading to HTTP
  (both nginx.conf and nginx.local.conf).
- Ownership: require an existing owned thread for the WS stream and REST
  navigate, and tear down the browser session on thread deletion so a
  later caller cannot reuse a retained page/cookies by guessing the id.
- SSRF: enforce the URL policy at the browser request boundary via a
  context-level route guard covering redirects, popups, iframes, and
  subresources (skipped for CDP-attached Chrome).
- IME: skip key forwarding while a composition is active so confirming a
  CJK candidate with Enter no longer submits the remote page form.

Adds regression tests for the request guard, session teardown on delete,
and the composing-Enter key decision.

* fix(frontend): smooth streaming in long tool threads

* Revert "fix(frontend): smooth streaming in long tool threads"

This reverts commit f0462516eabe77f138d4027ea1c714fb226683cf.

* fix(browser): address review security and lifecycle findings

- Reject cross-origin WebSocket upgrades on the live browser stream
  (Origin allow-list reuse of CORS/same-origin helpers) to close a
  WS-CSRF hole, and fail closed when the ownership store is absent.
- Warn when a CDP-attached session runs with the SSRF request guard
  off, and drop the unreachable CDP screencast teardown dead code.
- Read browser session launch config from a single canonical source
  (browser_navigate) so it is deterministic regardless of call order.
- Bound per-thread Chromium accumulation with idle-timeout eviction
  and an LRU max-sessions cap.
- Reset the Live reconnect counter on a successful open so the stream
  can't permanently stall after the cumulative attempt cap.

* fix(frontend): reduce long tool thread render stalls

Reuse stable historical message groups during streaming, defer heavy Markdown and browser previews, and lazy-decode message images.

* fix(browser): keep live control responsive during continuous input

Why: Manual browser control felt laggy — a physical click ran the remote
Playwright click three times and each non-move input synchronously awaited a
JPEG screenshot, so events queued behind capture (queue wait up to ~237ms).
The first async attempt used a trailing-edge debounce, which froze the visible
page until a wheel/keyboard gesture stopped ("scroll finishes, then it jumps").

What:
- Frontend forwards one `click` per physical click instead of also emitting
  `down`/`up`, so the remote page is not clicked twice per gesture.
- Backend detaches live-frame capture from input dispatch: non-move actions
  start a rate-limited background refresh loop (leading frame + bounded cadence)
  that keeps emitting frames while input continues and never blocks dispatch.
- Add regression tests: input dispatch no longer awaits the screenshot, rapid
  inputs coalesce, and continuous input keeps refreshing before it stops.

Scenarios: Verified in the live Browser panel — a single click completes in
~57ms (was blocked behind a 171ms capture), and a 1.14s sustained wheel gesture
renders ~7 frames throughout the scroll instead of one frame after it ends.

* fix(browser): harden worker and session lifecycle

* fix(browser): address latest review feedback

* fix(frontend): preserve optimistic new-chat message

* test(e2e): preserve mocked message run ids

* fix(browser): address capability review feedback

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-07-21 11:46:33 +08:00
Tu Naichao
959bf13406
fix(memory): flush memory queue on graceful shutdown to prevent loss (#4181)
* fix(memory): bounded shutdown flush via MemoryManager.shutdown_flush

Re-applies the memory-queue shutdown drain on top of the pluggable
MemoryManager abstraction (#4122): the old top-level MemoryUpdateQueue
singleton is gone, so the drain is now a backend contract instead of
host code reaching into the queue.

- MemoryManager ABC: shutdown_flush(timeout) -> bool. Every backend
  implements a bounded graceful-shutdown drain.
- DeerMem: queue.flush_sync (daemon-thread + Event.wait hard timeout
  for the uninterruptible sync LLM call; joins an in-flight worker
  first so contexts a debounce Timer already pulled out are not lost on
  exit; skips inter-item sleep on the drain path; per-item
  succeeded/failed count), exposed via shutdown_flush.
- noop: shutdown_flush is a clean no-op success.
- Gateway lifespan: call get_memory_manager().shutdown_flush(timeout)
  after channels/scheduler stop, via asyncio.to_thread, try/except
  bounded. No host-level pending/processing guard -- the backend
  short-circuits on an idle buffer, so the host cannot "forget" the
  in-flight case (structurally eliminates the guard race flagged on the
  prior revision).
- shutdown_flush_timeout_seconds added to the shared MemoryConfig
  (host-owned lifecycle budget, default 30, 1-300) + exposed on
  MemoryConfigResponse and the embedded client; config_version 25 -> 26.

Tests: queue flush_sync (7), lifespan drain incl. False-branch caplog
assertion + disabled gate (3), ABC contract noop/deermem (3).

* fix(chart): gateway grace period so memory drain is not SIGKILLed

K8s defaults terminationGracePeriodSeconds to 30s, shorter than the
Gateway's graceful-shutdown work (channel stop ~5s + memory queue drain
default 30s). Without an explicit grace period, K8s SIGKILLs the memory
drain mid-flight and silently re-introduces the loss shutdown_flush is
fixing (flagged on the prior revision).

- gateway pod: terminationGracePeriodSeconds (default 45, configurable).
- gateway container: preStop sleep (default 5, 0 disables) so the
  Service/ingress deregisters the pod before SIGTERM begins the drain.
- values.yaml + README: both configurable; README documents that the
  grace period must track memory.shutdown_flush_timeout_seconds.

* docs(memory): document shutdown_flush_timeout_seconds + lifespan drain

Add the host-shared field to the memory config list and Config Schema
summary in backend/AGENTS.md, noting the lifespan drain and the K8s
grace-period relationship.

* fix(chart): bump embedded config_version to 26

The chart's embedded `config:` block (values.yaml + README example) still
had config_version: 25 after commit f3ca8e9f raised config.example.yaml to
26, failing the validate-chart config_version drift check. Bump both to 26.
2026-07-15 20:25:41 +08:00
qin-chenghan
ad45f59d66
feat(memory): pluggable memory abstraction with self-contained DeerMem backend (#4122)
* feat(memory): pluggable + self-contained memory system (MemoryManager plan phases 1 & 2)

Phase 1 — Pluggable (steps 0-10):
- ABC MemoryManager (9 methods) + singleton factory + drop-in backend discovery
- DeerMem default backend with core/ (storage/queue/updater/prompt/message_processing)
- NoopMemoryManager backend (proves pluggability)
- All call sites (middleware/hook/prompt/gateway/client/app) routed through manager
- hasattr capability probing for DeerMem-internal methods (no hard imports)
- MemoryConfig gains manager_class field; shared vs DeerMem-private annotated

Phase 2 — Self-contained DeerMem (steps 11-18):
- backend_config passthrough + DeerMemConfig (all DeerMem-private fields moved off MemoryConfig)
- DI: DeerMem owns storage/queue/updater/llm as instance attributes (no global singletons)
- Storage independence: core/paths.py with own root (~/.deermem or ),
  factory auto-injects deer-flow's runtime_home() as absolute base_dir (zero-config)
- LLM independence: core/llm.py via langchain init_chat_model (no create_chat_model)
- Trace independence: optional tracing_callback replaces inject_langfuse_metadata/request_trace_context
- Message processing independence: hide_from_ui default-skip + optional should_keep_hidden_message hook
- Internal imports → relative (only deer_mem.py ABC import is host-relative)
- Carrier (deer_mem.py adapter) / portable (deermem/ config+core) split
- New tests: test_deermem_self_contained + test_memory_manager_pluggable; all memory tests migrated
- Other-agent demo: samples/other_agent_demo/ + automated portability test
- config.example.yaml memory section updated to phase-2 schema

* feat(memory): port consolidation + staleness fix into self-contained DeerMem; phase-2 host hooks

Port upstream #3996 (memory consolidation) and #3993 (staleness KeyError fix)
from origin/MemoryManager into the pluggable, self-contained DeerMem structure
(backends/deermem/deermem/), adapted to the DI MemoryUpdater (config injected,
not get_memory_config globals):

- DeerMemConfig: add consolidation_enabled (opt-in, default false) /
  consolidation_min_facts / consolidation_max_groups_per_cycle /
  consolidation_max_sources
- prompt.py: factsToConsolidate JSON field + {consolidation_section} placeholder
  + CONSOLIDATION_PROMPT constant
- updater.py: _coerce_source_confidence / _select_consolidation_candidates /
  _build_consolidation_section module helpers (matching the existing
  _select_stale_candidates style); consolidation normalization in
  _normalize_memory_update_data; consolidation apply in _apply_updates (after
  max_facts trim, with apply-time guardrails mirroring staleness); staleness
  KeyError fix (f["id"] -> f.get("id") is not None) applied to both the
  staleness guardrail and the consolidation allowed_source_ids comprehension
- config.example.yaml: consolidation section under memory.backend_config
- tests/test_memory_consolidation.py: 40 DI-adapted tests (running, not skipped)
  incl. the staleness KeyError regression

Also includes in-flight phase-2 host-integration work: storage_path semantics
(any absolute/relative value = root dir) and host-default tracing_callback /
should_keep_hidden_message hooks injected into backend_config by the factory.

Co-Authored-By: Claude <noreply@anthropic.com>

* feat(memory): add noop backend template and backends guide

- backends/noop/: complete drop-in template (config.py with zero deer-flow
  imports, noop_manager.py with a 6-step new-backend walkthrough in its
  docstring, commented optional fact-CRUD capabilities).
- backends/README.md: which files to touch when adding/swapping a backend,
  the 5-item backend contract, and common pitfalls.
- manager.py: generalize backend examples in comments (drop mem0-specific
  references).

Co-Authored-By: Claude <noreply@anthropic.com>

* fix(frontend): guard formatTimeAgo against invalid timestamps

Return a neutral placeholder when the input date is invalid (e.g. an empty lastUpdated from a backend with no memories) instead of throwing 'Invalid time value' from date-fns.

Co-Authored-By: Claude <noreply@anthropic.com>

* feat(memory): wire tool-driven memory mode through the MemoryManager ABC

tools.py (memory_search/add/update/delete) now calls get_memory_manager()
instead of the removed host memory module, so tool mode (memory.mode: tool)
works for any backend. DeerMem.search is implemented (case-insensitive
substring match, ranked by confidence) as a stand-in for the planned
semantic retrieval; noop.search returns [] (unchanged). Fact-CRUD tools
use getattr+callable probing -- backends lacking those ops (noop) get a
clear JSON error instead of crashing.

Tests: test_memory_tools rewired to mock the manager (handler tests) +
TestModeGating retained; test_memory_search now covers DeerMem.search;
pluggable stubs test updated (search no longer a stub).

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: resolve lint errors (import sorting, type annotation quotes, E402 in skipped tests)

* docs: restore explanatory comments in config.example.yaml memory section

* fix(security): port html-escape memory facts fix (#4097) to vendored DeerMem prompt.py

* fix(memory): address review + port dropped upstream memory fixes

Review blockers (vendored DeerMem):
- #4044 restore _escape_memory_for_prompt (current_memory blob in
  MEMORY_UPDATE_PROMPT) - prevents </current_memory> breakout
- #4028 html.escape staleness-section cat/content in _build_staleness_section
- #4119 add _escape_summary for injection-path summaries (Work/Personal/
  Current Focus/Recent/Earlier/Background)
- default-model silent no-op: factory injects host default chat model via a
  new host_llm slot (create_chat_model(name=None)); DeerMem prefers host_llm
  over build_llm(model). Zero-config extraction works out of the box again
- MemoryConfigResponse: fix stale docstring (backend-agnostic shape; DeerMem
  knobs live under backend_config, not top-level - restoring flat would
  re-couple the API to DeerMem). Frontend audited: does not read /memory/config
- _host_default_tracing_callback: restore langfuse assistant_id/environment
- search: push category onto the ABC signature; DeerMem filters BEFORE the
  top_k slice (was filtered client-side after slicing -> starved results)
- _do_update_memory_sync: split into wrapper+impl; bind trace_id into the
  request-trace ContextVar on the Timer/executor worker via a new
  trace_context_manager host hook (None trace_id left unbound - no fabrication)
- client.py fact-CRUD now passes user_id (was writing to the global bucket
  while get_memory reads per-user)
- _resolve_manager_class: fail-fast (raise ValueError) on an unresolved
  explicit manager_class instead of silently falling back to DeerMem (memory is
  persistent state - a wrong store is a silent data-integrity footgun)

Upstream memory fixes dropped by the host->vendored rename conflict, re-ported
to backends/deermem/deermem/core/ (+ deer_mem.py):
- #4073 queue busy-timer-spin -> _reprocess_pending flag (core/queue.py)
- #4074 null source.confidence in staleness -> _coerce_source_confidence
  (core/updater.py: _build_staleness_section + _apply_updates stale sort)
- #4075 factsToRemove is optional (drop from _REQUIRED_MEMORY_UPDATE_TOP_LEVEL_KEYS)
- #4076 null confidence in search ranking -> _coerce_source_confidence
  (deer_mem.py DeerMem.search)

host_llm + trace_context_manager are host-injected via backend_config (factory
in manager.py), keeping backends/deermem/ at exactly one `from deerflow` line
(the ABC contract) - portability test preserved.

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: resolve lint errors (F541 f-string without placeholders, E501 line too long)

* fix(memory): restore hide_from_ui clarification preservation, expose mode

Two memory-system fixes (F541/E501 lint was already fixed on this branch):

- filter_messages_for_memory: restore default preservation of well-formed
  human_input_response clarification answers (v2 regression). The
  self-containment refactor made the bare function skip ALL hide_from_ui when
  no hook was passed, but upstream preserves well-formed clarification
  responses by default (test_hide_from_ui_human_input_response_is_preserved).
  Inline a host-agnostic _is_human_clarification_response mirror of
  read_human_input_response as the default keep-decision; the host-injected
  should_keep_hidden_message hook still overrides (production path unchanged).
  Portable package stays zero `from deerflow`.

- /memory/config: expose `mode` (middleware|tool) in MemoryConfigResponse +
  the config/status endpoints + client.get_memory_config. mode is a host-
  shared, behavior-determining field missing from the response projection.
  Sync tests (mock .mode; e2e assert mode present).

- Align manager_class field docstring with fail-fast behavior.

Tests: filter/self-contained/portability (35) + memory-config (4) pass;
ruff clean.

Co-Authored-By: Claude <noreply@anthropic.com>

* fix(memory): resolve ruff format failures in memory module + tests

`make lint` runs `ruff format --check` in addition to `ruff check`; 8 memory
files had pending format changes -- 7 pre-existing (deer_mem, updater, tools,
test_memory_queue/router/search/tools) + message_processing from the
hide_from_ui fix. Apply `ruff format`: whitespace/wrapping only, no logic
change. 109 memory tests pass; ruff check + format --check both clean.

Co-Authored-By: Claude <noreply@anthropic.com>

* fix(memory): address PR review - legacy field migration, fact_id contract, path/docs

Address willem-bd's review on PR head bc8bf0d4 (risk:high, persistent state):

- config: auto-migrate pre-abstraction top-level memory.* DeerMem fields
  (storage_path, max_facts, debounce_seconds, model_name, token_counting,
  staleness_*, consolidation_*) into backend_config on load + warn, so an
  upgrade does NOT silently revert customized settings (was: silent
  extra='ignore' drop). model_name -> backend_config.model.model. Unknown
  top-level keys warned.
- factory: resolve a relative backend_config.storage_path against runtime_home()
  (base_dir-relative, CWD-independent) to preserve pre-abstraction semantics;
  paths.py stays portable (no runtime_home import).
- tools: memory_add uses the fact_id returned directly by create_fact instead of
  re-deriving it via content-key matching (coupled the tool to the backend's
  content normalization; could misreport a storage cap). create_fact now returns
  (memory_data, fact_id); gateway/client/tool updated. Fix terse
  {"error":"content"} -> {"error":"empty content"}.
- app.py: update stale token_counting=="char" warm-up comment to point at
  manager.warm (DeerMem.warm re-checks char and returns early).
- router: comment explaining reload_memory silent fallback vs fact 501 asymmetry
  (read-only degrade vs write fail-loud).
- CHANGELOG: document breaking changes (/memory/config + client.get_memory_config
  shape flat->backend_config; custom storage_class path moved + __init__ must
  accept config) and the legacy-field auto-migration.
- tests: add regression test pinning the per-user memory path
  ({storage_path}/users/{safe_user_id}/memory.json == host make_safe_user_id)
  across the abstraction; update create_fact mocks for (memory_data, fact_id).

Tests: 273 passed (memory suite); ruff check + format clean.

Co-Authored-By: Claude <noreply@anthropic.com>

* fix(memory): address PR review - storage_path, max_facts, tracing, parsing

Six review findings (willem-bd), each verified against upstream:

- storage_path semantics (file -> root dir): migration drops file-style
  (.json) legacy values with a warning; factory raises if storage_path
  resolves to an existing file (avoid silent NotADirectoryError write
  failure). CHANGELOG + config.example.yaml comment updated.
- create_memory_fact enforces max_facts again (via _trim_facts_to_max) and
  returns (memory, None) when the cap evicts the new fact; memory_add tool
  reports "not stored", client raises ValueError, POST /memory/facts -> 409.
- max_facts trim uses _coerce_source_confidence (was raw f.get("confidence",
  0) -> TypeError on non-float imported/legacy confidence, swallowed as
  silent update failure).
- memory-tracing assistant_id restored to "memory_agent" (was "lead-agent"
  copy-paste; matches upstream + DeerMem run_name).
- _is_human_clarification_response cross-checked against
  read_human_input_response (drift guard test).
- empty-string legacy values skipped silently in migration (narrow fix, not
  broad "if not value" which would skip explicit bool False).

8 new regression tests. make lint + 406 memory tests pass.

Co-Authored-By: Claude <noreply@anthropic.com>

* fix(memory): address internal review - storage fail-fast, build_llm degrade, config warn, noop template

Addresses 4 findings from the PR #4122 internal supplemental review
(parallel to willem-bd's review, no overlap):

- create_storage fail-fast: a misspelled/unimportable storage_class now
  raises ValueError instead of silently falling back to FileMemoryStorage.
  Memory is persistent state, so a wrong store is a data-integrity footgun;
  mirrors the existing manager_class resolution policy. (storage.py)

- noop template create_fact signature: the commented template used
  keyword-only `content` and returned a bare dict, while DeerMem's actual
  create_fact takes positional `content` and returns tuple[dict, str|None]
  (the memory_add tool passes content positionally; gateway/client/tools all
  tuple-unpack). A backend copied from the template would 500 on fact-CRUD.
  Template fixed; delete_fact/update_fact templates left (callers compatible).
  (noop_manager.py)

- build_llm graceful degrade: wrap init_chat_model in try/except, degrade to
  None + WARNING on failure (mirroring _host_default_llm) so a misconfigured
  explicit model does not crash app startup -- non-LLM memory ops still work
  and an update raises at runtime with the error logged. (llm.py)

- from_backend_config unknown-key warning: log a WARNING for unknown
  backend_config keys (mirrors the host layer's load_memory_config_from_dict)
  so a typo like `storage_pat` does not silently fall back to the default and
  write memory to an unintended location. (config.py)

Tests: rewrote 3 create_storage fallback tests to expect ValueError; added 4
tests (build_llm zero-config/degrade, from_backend_config warn/silent).
make lint green; full memory suite passes.

Co-Authored-By: Claude <noreply@anthropic.com>

---------

Co-authored-by: lllyfff <2281215061@qq.com>
Co-authored-by: Claude <noreply@anthropic.com>
Co-authored-by: lllyfff <122260771+lllyfff@users.noreply.github.com>
2026-07-15 11:21:04 +08:00
Mohammed Ansari
4af6178358
feat(trace): add agent observability with Monocle (#4024)
* Add Monocle tracing

Enable Monocle (OpenTelemetry tracing for LLM apps) with one setup call plus the monocle_apptrace dependency. setup_monocle_telemetry auto-instruments the frameworks already in use and writes traces to .monocle/. Additive; no changes to application logic.

* Config-gate Monocle telemetry in the Gateway lifespan

Addresses review on #4024: moves setup_monocle_telemetry out of agents/__init__ import time into the Gateway lifespan, gated by MonocleTracingConfig (MONOCLE_TRACING env, default off). Warns on the Langfuse/global-OTel-provider conflict and relies on monocle_apptrace's own duplicate-setup guard and existing-provider attach. Pins monocle_apptrace>=0.8.8 (+ uv.lock), adds .monocle/ to .gitignore, adds tests (default-off / toggle-on / no import-time setup), and documents exporters, Okahu, and the VS Code viewer in README, config.example.yaml, and backend/AGENTS.md.

* Clarify Monocle/Langfuse single-provider guidance

Make the docstring, warning, and AGENTS.md consistent with the README: only one library can own the global OpenTelemetry provider; Monocle initializes at startup before Langfuse's per-run handler, so enabling both drops Langfuse's spans — enable one OTel tracer (LangSmith, a callback, coexists fine).

* Address review: optional extra, exporter validation, off-box warning, tests

Responds to the second review round.

- Make monocle_apptrace an optional extra (deerflow-harness[monocle], re-exposed
  as deer-flow[monocle]) following the boxlite/tui precedent, so a default
  install no longer pulls the OpenTelemetry stack. It stays pinned in the dev
  group for the tracing tests, and enabling MONOCLE_TRACING without the extra
  raises a clear install error.
- Warn loudly at startup whenever any exporter other than `file` is configured,
  since those move prompts, tool inputs/outputs, and completions beyond the
  local .monocle/ directory.
- Validate MONOCLE_EXPORTERS against the known exporter names and require
  OKAHU_API_KEY when okahu is selected, mirroring the Langfuse pattern.
  Validation runs from Monocle's own init (not validate_enabled) so a config
  typo can never fail agent runs; errors surface at Gateway startup instead.
- Grow the tests from 5 to 13: caplog coverage for the Langfuse-conflict and
  off-box warnings, exporter validation cases, a stronger import-time
  regression that asserts the global TracerProvider is not replaced, and a
  subprocess double-invoke test exercising the real check_duplicate_setup.
- Docs: config.example.yaml block retitled to a dedicated tracing header;
  README documents the [monocle] install and scopes tracing to Gateway runs.

* docs: align Monocle README section with the other tracing providers

Lead with what Monocle is and captures, drop the install step (the dev
group already ships monocle_apptrace via uv sync; unusual installs get
the RuntimeError), and point the missing-package error at the repo-native
command (uv sync --extra monocle / deerflow-harness[monocle]).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* Address review: verified Langfuse coexistence, lifespan test, scope docs

Responds to the third review round.

The Langfuse conflict claim was wrong, verified empirically against langfuse
4.5.1 in both init orders: whichever library initializes second reuses the
existing global TracerProvider and attaches its own span processor, so neither
side loses spans. Dropped the warning and its tests, corrected the README,
AGENTS.md, and config.example.yaml statements, and pinned the verified behavior
with test_coexists_with_langfuse (real monocle + real langfuse in a subprocess,
no mocks). One honest caveat documented: both processors see all spans, so
Monocle's exporters also capture Langfuse's spans when both are enabled.

Also from the review:
- Document the Gateway-only scope in AGENTS.md: the lifespan is the sole call
  site, so the embedded DeerFlowClient and TUI are not instrumented; embedded
  users call setup_monocle_tracing_if_enabled() themselves.
- Add test_gateway_lifespan_initializes_monocle pinning the lifespan wiring.
- Comment why MonocleTracingConfig.is_configured is intentionally coarser than
  LangSmith/Langfuse (composite validation lives in validate() at startup).
- Note that monocle_exporters_list takes the comma-separated string as-is.
- Module-level importorskip("monocle_apptrace") so minimal installs collect
  the test module cleanly.

* docs: reword Monocle intro sentence

* fix(tests): run the import-time regression in a subprocess

test_no_import_time_setup deleted deerflow.agents* from sys.modules and
re-imported to force __init__ to re-execute. The re-import creates new module
objects, and restoring the old sys.modules entries afterwards leaves the parent
package's attribute bindings pointing at the new ones, so any later test that
resolves a deerflow.agents.* dotted path (monkeypatch.setattr in
test_summarization_middleware, test_thread_data_middleware, and others) failed
with "module 'deerflow.agents' has no attribute ...".

Run the check in a subprocess instead: the import is genuinely fresh, the
assertion is stronger (the provider must still be the SDK-less proxy, proving
nothing was installed at any point), and no module identity leaks into the
rest of the suite.

* Address review: console warning scope, embedded hint, honest naming, doc alignment

Responds to the post-approval review round:

- Scope the off-box exporter warning to the remote exporters (okahu, s3,
  blob, gcs): console writes to local stdout and no longer trips it.
  config.example.yaml's data-handling note now distinguishes file /
  console / remote likewise.
- Rename MonocleTracingConfig.is_configured to is_enabled so the boolean
  reads as what it checks; the exporter-dependent credential check stays
  in validate(), run at Gateway startup.
- Hint on the embedded path: build_tracing_callbacks() logs a debug line
  when MONOCLE_TRACING is set but setup never ran in this process, so
  embedded DeerFlowClient/TUI users are not left with silent no-op
  tracing. Backed by a process-global setup flag.
- Re-export setup_monocle_tracing_if_enabled from deerflow.tracing,
  matching the package convention.
- Note the deliberate fail-open-at-startup contrast with
  LangSmith/Langfuse in the lifespan, and the OTel SDK-internals
  dependency in the coexistence test.
- Test hygiene: clear MONOCLE_* env in the tracing config/factory
  fixtures; reset the setup flag in the monocle test fixture; reword the
  README Langfuse-spans claim as the shared-provider inference it is.
- Document that .monocle/ trace files are never rotated or cleaned up.

* fix(tests): pin the factory logger level in the embedded-hint tests

configure_logging() from earlier tests in the full suite pins an explicit
INFO level on the logger hierarchy, so a root-level caplog.at_level(DEBUG)
never sees the factory's debug hint. Scope caplog to
deerflow.tracing.factory so the test is independent of suite ordering.

* Address review: co-export disclosure, lifespan failure test, exporter parse dedup

- Off-box warning now notes that Langfuse's spans are exported too when
  both providers are enabled and share the global OTel provider; pinned
  both ways by tests.
- Pin the lifespan fail-open contract: a raising Monocle setup is logged
  and the Gateway keeps serving (pragma dropped now that the path is
  exercised). README notes a config error is reported at startup and
  tracing stays off until restart.
- Hoist exporter parsing into MonocleTracingConfig.exporter_list so
  validate() and the off-box warning cannot diverge, and note the
  upstream coupling on the exporter allow-list.
- Reduce config.example.yaml's Monocle block to a pointer; the capture,
  retention, and data-handling detail lives in README's Monocle section.

---------

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-07-14 08:58:06 +08:00
Ryker_Feng
01dc067997
feat: add composer input polishing (#3986)
* feat: add composer input polishing

* Revert "Merge branch 'main' into feat/input-polish"

This reverts commit 5b6ceccf0db3092bc62fde3b05e7816829601756, reversing
changes made to 45fbc57fef5fa5fd878cf0176c37f3e3bc7ebef6.

* Merge main into feat/input-polish

* style(frontend): format input helper polish guard

* fix(input-polish): address composer polish review findings

Frontend
- Add a cancel affordance to the in-flight polish status pill that calls
  abortInputPolishRequest(), so a slow/hung provider no longer hard-locks the
  composer for up to stream_chunk_timeout with a page reload (and draft loss)
  as the only escape.
- Reset promptHistoryIndexRef/promptHistoryDraftRef when a rewrite is applied
  (and on undo), so a stale history-browse index can no longer let the next
  ArrowDown silently overwrite the polished draft.
- Disable polishing while an open human-input card is present, matching the
  frontend/AGENTS.md rule that composer entry points defer to the card so
  card-reply metadata is preserved.
- canPolishInput now reuses parseGoalCommand/parseCompactCommand instead of a
  third hardcoded reserved-command regex, and drops the phantom /help entry
  (no /help parser exists in the composer), so future builtins only need to be
  taught to the existing parsers.

Backend
- Extract the non-graph one-shot LLM path (build model + inject Langfuse
  metadata + system/user invoke + text extract) into
  deerflow.utils.oneshot_llm.run_oneshot_llm, shared by the input-polish and
  suggestions routers so tracing-metadata and invocation shape cannot drift
  between the two copies.
- strip_think_blocks gains truncate_unclosed (default True, preserving the
  suggestions/goal JSON-prep behavior); input polish passes False so a draft
  that legitimately contains a literal <think> substring is no longer
  truncated into a partial rewrite or a spurious 503.
- Validate the empty-check and max_chars boundary against the same stripped
  view of the draft that is sent to the model, so the user-facing length
  boundary and the model input can no longer disagree.

Tests / docs
- Backend: literal-<think> preservation, whitespace-only rejection, and
  normalized-length/model-input agreement cases; suggestions tests repoint the
  create_chat_model patch to the shared helper module.
- Frontend: helper unit tests updated for the /help/reserved-command change; a
  new Playwright case covers cancelling an in-flight polish request.
- backend/AGENTS.md documents the shared one-shot helper and the polish
  normalization/think-tag behavior.

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-07-08 17:10:27 +08:00
codeingforcoffee
4669d3c089
feat(gateway): cache-aware cost accounting (#3920)
* feat(gateway): cache-aware cost accounting + /api/console observability endpoints

- Capture prompt-cache hits (usage_metadata.input_token_details.cache_read)
  in RunJournal and SubagentTokenCollector as a sparse cache_read_tokens key
  in token_usage_by_model (JSON field — no schema migration; legacy bucket
  shapes unchanged)
- New read-only /api/console router: GET /stats (headline counters),
  GET /runs (cross-thread paginated history joined with thread titles),
  GET /usage (zero-filled daily token series + per-model breakdown);
  user-scoped, 503 on the memory database backend
- Optional models[*].pricing (currency, input_per_million,
  output_per_million, input_cache_hit_per_million) powers real spend
  estimation; cache-hit input tokens are billed at the hit price (omitted
  hit price falls back to the miss price as a conservative upper bound);
  unpriced models yield cost: null
- create_chat_model strips the presentation-only pricing block so it never
  reaches the provider client (unknown kwargs are forwarded into the
  completion payload and break live calls)
- Tests: console router SQLite round-trips, journal/collector cache capture
  incl. a DeepSeek raw-usage pin test, factory strip regression

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* refactor: address review feedback on cost sum and sparse cache_read_tokens

- console.py: replace the walrus-in-generator total-cost sum with an
  explicit loop (review noted the multi-line form reads ambiguously)
- token_collector.py: omit cache_read_tokens from usage records when the
  provider reported no cache hits, matching the journal's sparse
  per-model bucket shape; absent is treated as 0 downstream
- add a regression test pinning the sparse record shape

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

---------

Co-authored-by: coffeeFish <codeingforcoffee@users.noreply.github.com>
Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
2026-07-04 23:14:46 +08:00
Zheng Feng
dcb2e687d5
feat(channels): add GitHub as a webhook-driven channel (#3754)
* feat(channels): add GitHub event-driven agents (#3754)

Add a webhook-driven GitHub channel with fail-closed webhook routing, deterministic per-agent PR/issue threads, mention-gated trigger fan-out, GitHub App token injection for sandboxed gh/git commands, and backend/AGENTS.md documentation.

* fix(llm-middleware): classify bare IndexError as transient

Upstream chat providers occasionally return 200 OK with an empty
generations list (observed against Volces "coding" on
ark.cn-beijing.volces.com). When that happens,
langchain_core.language_models.chat_models.ainvoke raises
``IndexError: list index out of range`` at
``llm_result.generations[0][0].message`` and kills the run.

Treat a bare IndexError reaching the middleware as a transient
upstream-payload glitch and route it through the existing
retry/backoff path instead of failing the whole agent run. The
retry budget and backoff schedule are unchanged.

Adds three regression tests covering the classifier and both the
recover-on-retry and exhausted-retries paths.

* fix(runtime): ignore stale LLM fallback markers from prior runs

When a run on a thread ends with the LLM-error-handling middleware emitting
a `deerflow_error_fallback`-marked AIMessage (e.g. after the IndexError
empty-generations classification fix lands), that message is persisted to
the thread's checkpoint as part of the messages channel. LangGraph replays
the full message history in `stream_mode="values"` chunks, so every
subsequent run on the same thread re-streams the stale fallback marker —
and the worker's chunk scanner faithfully picks it up, flipping
`RunStatus.success` to `RunStatus.error` for runs that themselves had
no LLM failure at all.

Snapshot the set of pre-existing message ids from the pre-run checkpoint
and thread it through `_extract_llm_error_fallback_message` /
`_try_extract_from_message` as a filter. Markers on history messages are
ignored; markers on fresh messages produced during this run still trip
the error path. Falls back to an empty set when the checkpointer is
absent or the snapshot can't be captured, preserving the prior behavior
on first-run / no-state paths.

Adds unit tests for the new filter (helper-level and `_collect_pre_existing_message_ids`)
plus an integration test exercising the full `run_agent` path with a stale
history checkpointer.

* fix(channels): make github channel fire-and-forget to avoid httpx.ReadTimeout on long runs

GitHub agent runs (clone -> edit -> test -> push -> PR) routinely exceed
the langgraph_sdk default 300s read deadline. The manager's runs.wait
call kept an HTTP stream open for the entire run lifetime, so the long
run blew up with httpx.ReadTimeout and the outer except branch then
released the dedupe key and emitted a false 'internal error' outbound.

The GitHub channel's outbound send is log-only by design: agents post to
the issue/PR via the gh CLI in the sandbox when they choose to comment
or create a PR. There is nothing for the manager to ferry back, so the
long-poll was pure overhead.

This change adds ChannelRunPolicy.fire_and_forget (default False) and
sets it True for the github channel. When fire_and_forget is True,
_handle_chat dispatches via client.runs.create (short POST, returns
once the run is pending) instead of client.runs.wait, and skips the
response-extraction + outbound-publish block. ConflictError on a busy
thread still trips the standard THREAD_BUSY_MESSAGE path so behavior on
the busy case is preserved for any future non-github fire-and-forget
channel.

Other (non-github) channels are unchanged: their policy defaults
fire_and_forget=False and they continue to dispatch via runs.wait.

Adds 6 regression tests in tests/test_channels.py::TestGithubFireAndForget:
- Default ChannelRunPolicy.fire_and_forget is False.
- The github policy registers fire_and_forget=True.
- github inbound calls runs.create, not runs.wait, with the right kwargs.
- github inbound publishes no outbound on success.
- ConflictError from runs.create still emits THREAD_BUSY_MESSAGE.
- Non-github channels (slack) still dispatch via runs.wait.

* test(lead-agent): accept user_id kwarg in skill-policy test stubs

The two GitHub-channel tests added in #3754 stubbed
_load_enabled_skills_for_tool_policy with a lambda that only accepted
`available_skills` and `app_config`, but the real function (and its call
site in agent.py) also passes `user_id`. This raised TypeError on every
run, failing backend-unit-tests.

Add `user_id=None` to match the three sibling stubs in the same file.

* refactor(gateway): disambiguate context-key set names

The two frozensets _INTERNAL_ONLY_CONTEXT_KEYS and _CONTEXT_ONLY_KEYS
shared a confusable "CONTEXT_ONLY" token in different orders, and the
first broke the _CONTEXT_<X>_KEYS pattern of its sibling
_CONTEXT_CONFIGURABLE_KEYS. Rename to make the distinct axes explicit:

  _CONTEXT_INTERNAL_CALLER_KEYS  - WHO: internal callers (scheduler) only
  _CONTEXT_RUNTIME_ONLY_KEYS     - WHERE: runtime context only, never configurable

Pure rename, no behavior change.
2026-07-04 22:56:24 +08:00
Xinmin Zeng
4fc08b4f15
feat: add scheduled tasks MVP (#3898)
* feat: add scheduled tasks MVP

* fix: harden scheduled task execution semantics

* feat(scheduled-tasks): preset-driven schedule form with timezone and live preview

Replace the raw cron input with a preset Select (hourly/daily/weekly/monthly/custom)
plus structured inputs (time picker, weekday toggles, day-of-month), datetime-local
for one-time tasks, a timezone selector defaulting to the browser timezone, and a
live human-readable preview. Reuses one ScheduledTaskScheduleInput for create and
edit; backend contract unchanged; zero new deps (pure Intl + DST-safe offset helpers).

* feat(scheduled-tasks): full-page i18n + recipe templates + E2E locale pin

Localize the rest of the scheduled-tasks page (filters, detail pane, actions,
edit form, run list, enum values) via t.scheduledTasks.* in en/zh. Add four
built-in recipe templates (GitHub Trending, news digest, issue triage, weekly
report) exposed as a chip row that pre-fills title + prompt + schedule. Pin
Playwright locale to en-US so E2E selectors stay stable against i18n. No backend
change, no new deps.

* fix(scheduled-tasks): idempotent 0003 migration, update head constants, future-date once test

Merge with main surfaced three CI failures:
- 0003_scheduled_tasks create_table collided with legacy test seeds that
  build from full metadata; guard with inspector.has_table so the revision
  no-ops when the table already exists (0004/0005 are already idempotent via
  _helpers.py).
- persistence bootstrap concurrency/regression tests pinned HEAD to main's
  0002_runs_token_usage; bump to the new head 0005_scheduled_task_thread_nullable.
- once-task router test used a fixed past run_at and tripped the
  must-be-in-the-future validation; use a future date.

* address review: ok-check, 502 for trigger failure, mock fields, migration filename, doc fences

- fetchThreadScheduledTasks now checks response.ok like the other fetchers.
- trigger endpoint returns 502 (not 409) when dispatch fails outright, so
  clients can distinguish a real conflict from a server-side failure.
- E2E mock normalizes scheduled-task objects with context_mode/last_thread_id
  and nullable thread_id, matching the backend contract the UI renders against.
- Rename 0002_scheduled_tasks.py -> 0003_scheduled_tasks.py to match its
  revision id (file was renamed in spirit already; filename now follows).
- CONFIGURATION.md: close the Tool Groups yaml fence and drop the stray fence
  after the Scheduler notes so the sections render correctly.

* fix(scheduled-tasks): harden lease, poller, config, and frontend UX after review

* fix(scheduled-tasks): harden run lifecycle, overlap skip, non_interactive gating, and DST conversion after review

- defer a once task's terminal status to the run-completion hook; the task
  stays running until the real outcome, and a startup sweep cancels once
  tasks orphaned by a crash (launch-time 'completed' could stick forever)
- record interrupted runs as a distinct 'interrupted' run status with a
  readable message; an interrupted once task ends 'cancelled', not 'failed'
- enforce overlap_policy=skip for fresh_thread_per_run via an active-run
  pre-check (same-thread ConflictError can never fire across fresh threads)
- protect terminal run statuses from the late launch-path 'running' write
- honor context.non_interactive only for internally-authenticated callers;
  arbitrary clients can no longer strip ask_clarification
- fix DST-stale timezone offset in zonedLocalToUtcIso by re-deriving the
  offset at the resolved instant (once tasks fired an hour late around
  spring-forward and the create->edit round-trip diverged)
- drop dead ScheduledTaskRunRepository.update_by_run_id; share one Gateway
  API error helper between channels and scheduled-tasks frontends

* fix(scheduled-tasks): close review round-3 gaps in guards, concurrency, and API ergonomics

- scrub internal-only context keys (non_interactive) from the assembled run
  config for non-internal callers: gating body.context alone left the same
  key smuggle-able through the free-form body.config copied verbatim by
  build_run_config
- guard update_after_launch with protect_terminal so the launch bookkeeping
  write cannot clobber a once task already finalized by a fast-failing run's
  completion hook (parent-row sibling of the run-row guard)
- reject a manual trigger while the task has an active run (409) instead of
  launching a duplicate concurrent run on fresh_thread_per_run
- re-arm a terminal once task to enabled when PATCH pushes run_at into the
  future; previously the endpoint returned 200 with a next_run_at that could
  never be claimed
- make max_concurrent_runs a real global cap: each poll claims only into the
  remaining budget of active (queued/running) scheduled runs
- paginate GET /scheduled-tasks/{id}/runs (limit<=200, offset) and push the
  thread filter of /threads/{id}/scheduled-tasks into SQL
- stamp context.user_id on scheduler-launched runs, matching IM channels, so
  user-scoped guardrail providers see the owning user

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-07-04 21:51:57 +08:00
AnoobFeng
e3e5c73b03
feat(observability): add trace-id correlation and enhanced logging (#3902)
* feat(observability): add trace-id correlation and enhanced logging

- add opt-in gateway request trace correlation via X-Trace-Id
- enhance logging with configurable trace_id-aware formatting
- propagate deerflow_trace_id into runtime context and Langfuse metadata
- keep enhanced logging disabled by default to preserve existing behavior

* fix: harden trace correlation wiring

- Make logging enhancement a restart-required startup snapshot and remove per-request config reads from TraceMiddleware
- Restrict trace ids to printable ASCII before writing them to response headers, logs, and Langfuse metadata
- Gate implicit DeerFlowClient trace-id creation behind logging.enhance.enabled while preserving explicit caller opt-in
- Bind embedded client trace context per stream step to avoid generator ContextVar leaks and cross-context reset errors
- Rebind memory update trace ids in Timer/executor worker paths so enhanced logs keep the captured correlation id
- Remove unrelated __run_journal context overwrite from the trace-correlation change set

* fix(gateway): avoid eager app construction on package import

* fix(gateway): avoid config load during app import

Keep Gateway app construction import-safe when config.yaml is absent by
disabling TraceMiddleware only for that construction-time fallback path.
Startup lifespan still performs strict config loading before serving.
2026-07-03 08:01:46 +08:00
Nan Gao
21b3510226
feat(agents): feature-gate the agents UI behind the agents_api flag (#3757) (#3769)
* feat(gateway): add GET /api/features for frontend feature gating (#3757)

* feat(agents): add useAgentsApiEnabled feature-flag hook (#3757)

* feat(agents): gate /workspace/agents segment on agents_api flag (#3757)

* feat(sidebar): grey out Agents button with tooltip when agents_api disabled (#3757)

* fix(sidebar): show disabled Agents tooltip on hover, harden a11y + e2e (#3757)

- Wrap the disabled Agents button in a hoverable tooltip trigger so the
  'feature not enabled' hint shows in the expanded sidebar, not only when
  collapsed (the SidebarMenuButton tooltip prop is hidden unless collapsed).
- Add tabIndex={-1} and drop the redundant onClick preventDefault.
- Add e2e coverage for the disabled state + a default /api/features mock.

* style(sidebar): move cursor-not-allowed to the hoverable span (#3757)

* test(agents): anchor e2e agents-API request filter with a path regex (#3757)

* fix(agents): don't expose backend config in disabled message; tell user to contact admin (#3757)

The disabled panel previously said 'Set agents_api.enabled: true in
config.yaml', leaking backend configuration to end users. Replace with a
generic 'not enabled on this server, contact your administrator' message
(matching the existing nameStepApiDisabledError copy). e2e now asserts the
contact-admin message and that no config.yaml/agents_api text is rendered.

* make format

* fix(agents): keep agents_api flag sticky during /api/features outage (#3757)

Failing open re-mounted the agents UI and re-triggered the 403 storm when
agents_api was genuinely disabled and /api/features was down. Persist the
last definitive answer and fall back to it (sticky) before failing open,
only failing open when nothing has ever been observed. Read the cached
value after mount so the first client render matches the server (no
hydration mismatch on the non-loading-gated sidebar).

* fix(sidebar): make disabled Agents entry keyboard/SR accessible (#3757)

The disabled-state explanation was hover-only: tabIndex={-1} removed the
entry from the tab order and the reason lived only in a pointer-triggered
tooltip. Keep it in the tab order and wire aria-describedby to a
visually-hidden reason so keyboard and screen-reader users learn why it is
disabled.

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-07-02 11:33:32 +08:00
Minh Vu
8fa6ed2b54
fix(gateway): fix oversized upload replacements deleting existing files (#3822)
* fix upload rollback on size limit

* fix upload staging cleanup and listings
2026-07-01 16:43:56 +08:00
Zheng Feng
ee8ad1bc67
feat(auth): add OIDC SSO support (#3506)
Add provider-agnostic OIDC authentication with Keycloak-compatible configuration, frontend SSO UI support
2026-06-21 15:47:53 +08:00
DanielWalnut
aa015462a7
feat(im): Add user-owned IM channel connections (#3487)
* Add user-owned IM channel connections

* Fix dev startup and channel connect popup

* Use async channel connect flow

* Harden dev service daemon startup

* Support local IM channel connections

* Align IM connections with local channels

* Fix safe user id digest algorithm

* Address Copilot IM channel feedback

* Address IM channel review comments

* Support all integrated IM channel connections

* Format additional channel connection tests

* Keep unavailable channel connect buttons clickable

* Fix IM channel provider icons

* Add runtime setup for enabled IM channels

* Guard global shortcut key handling

* Keep configured IM channels editable

* Avoid password autofill for channel secrets

* Make channel threads visible to connection owners

* Persist IM runtime config locally

* Allow disconnecting runtime IM channels

* Route no-auth channel sessions to local user

* Use default user for auth-disabled local mode

* Show IM channel source on threads

* Prefill IM channel runtime config

* Reflect IM channel runtime health

* Ignore Feishu message read events

* Ignore Feishu non-content message events

* Let setup wizard enable IM channels

* Fix frontend formatting after merge

* Stabilize backend tests without local config

* Isolate channel runtime config tests

* Address channel connection review comments

* Use sha256 user buckets with legacy migration

* Ensure runtime IM channels are ready after restart

* Persist disconnected IM channel state

* Address channel connection review comments

* Address channel connection review findings

Frontend connect flow:
- Open the runtime-config dialog only when a provider still needs
  credentials; configured providers go straight to the connect flow, so
  the binding-code/deep-link path is reachable from the UI again.
- After saving credentials, continue into the connect flow when a user
  binding is still required (multi-user mode) instead of stopping at a
  "Connected" toast.
- Extract shared provider-state helpers to core/channels/provider-state
  and add unit + e2e coverage for the direct-connect and
  configure-then-connect paths.

Provider status semantics:
- Report connection_status from the user's newest connection row;
  with no binding it is not_connected, except in auth-disabled local
  mode where a configured running channel is effectively connected.

Concurrency and event-loop correctness:
- Offload ChannelRuntimeConfigStore construction and writes, channel
  service construction, and Slack connection replies to threads; add a
  tests/blocking_io/ anchor for the runtime-config handlers.
- Consume binding codes with a conditional UPDATE so a code can only be
  used once under concurrent workers; retry upsert_connection as an
  update when a concurrent insert wins the unique constraint.
- Serialize ensure_channel_ready per channel so concurrent provider
  polls cannot double-start a channel worker.

Config and migration hardening:
- Stop mutating the get_app_config()-cached Telegram provider config;
  the runtime store now owns the UI-entered bot username.
- Register channel_connections in STARTUP_ONLY_FIELDS with the
  standardized startup-only Field description.
- Match the legacy unsafe-id bucket by recomputing its exact SHA-1 name
  so another user's same-prefix bucket can never be migrated.
- Remove the unused Telegram process_webhook_update path and document
  src/core/channels in the frontend docs.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* Address PR review comments on authz scoping and channel runtime

Security (review feedback from ShenAC-SAC):
- Scope internal-token callers to the connection owner carried in
  X-DeerFlow-Owner-User-Id instead of bypassing owner checks outright,
  in both require_permission(owner_check=True) and the stateless run
  endpoints. Internal callers keep access to their own and
  shared/legacy threads, and may claim a default-owned channel thread
  for its real owner, but a leaked internal token no longer grants
  cross-user thread access.
- Require admin privileges for POST/DELETE /api/channels/{provider}/
  runtime-config: runtime credentials and channel workers are
  instance-wide shared state (same model as the MCP config API).
  Read-only provider listing stays available to all users.

Performance (review feedback from willem-bd):
- Skip the redundant thread channel-metadata PATCH after the first
  successful backfill per thread.
- Reuse the per-connection Slack WebClient until its token changes
  instead of constructing one per outbound message.
- Reconcile channel readiness for all providers concurrently in
  GET /api/channels/providers.

Also resolve the code-quality unused-import flag in the blocking-io
anchor by pre-importing the channel service via importlib.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* Fix prettier formatting in provider-state test

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* Reconcile UI runtime channel config with config reload on restart

Main now reloads a channel's config.yaml entry on restart_channel()
(#3514, issue #3497). Adapt the user-owned connection flow to coexist:

- configure_channel() restarts with reload_config=False — the caller
  just supplied the authoritative config (browser-entered credentials
  that are never written to config.yaml), so a file reload must not
  clobber it with the stale on-disk entry.
- _load_channel_config() re-applies the UI runtime-store overlay used
  at startup, so an operator-triggered restart keeps browser-entered
  credentials for channels without a config.yaml entry and does not
  resurrect a channel disconnected from the UI.
- Offload the reload's disk IO (config.yaml + runtime store) with
  asyncio.to_thread, matching the blocking-IO policy on this branch.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
2026-06-12 15:24:58 +08:00
Ryker_Feng
167ef4512f
feat(memory): add memory.token_counting config to avoid tiktoken network dependency (#3429) (#3465)
* feat(memory): add memory.token_counting config to avoid tiktoken network dependency (#3429)

Add a `memory.token_counting` option (`tiktoken` | `char`) so deployments in
network-restricted environments can opt out of tiktoken entirely. In `char`
mode the memory-injection budget uses a network-free character-based estimate
and never triggers the BPE download from openaipublic.blob.core.windows.net,
which could otherwise block for tens of minutes (see #3402).

Also harden the default `tiktoken` path:
- cache an in-flight LOADING sentinel so concurrent callers fall back
  immediately instead of spawning more blocking get_encoding threads when the
  first load is still running (e.g. under the 5s startup warm-up timeout);
- cache failures with a timestamp and retry after a cooldown so a transient
  network outage self-heals back to accurate counting without a restart;
- skip startup warm-up entirely in char mode.

The new config is surfaced via the memory config API and config.example.yaml
(config_version bumped). Default remains `tiktoken`, so existing deployments
are unaffected.

* fix(memory): use CJK-aware char token estimate and address review feedback

- Replace the flat len(text)//4 fallback with a CJK-aware estimate so
  Chinese/Japanese/Korean memory content does not over-fill the injection budget
- Document the internal tiktoken retry cooldown and char-mode escape hatch
- Sync CLAUDE.md / config.example.yaml / MEMORY_IMPROVEMENTS.md wording
- Fix MemoryConfigResponse mocks/assertions and add CJK estimate tests
2026-06-10 23:26:15 +08:00
DanielWalnut
2b795265e7
fix: align auth-disabled mode and mock history loading (#3471)
* fix: align auth-disabled mode and mock history loading

* fix: address auth-disabled review feedback

* test: cover auth-disabled backend contract

* style: format frontend tests

* fix: address follow-up review comments
2026-06-10 16:11:00 +08:00
Willem Jiang
519200728a
fix(middleware): offload memory injection off event loop to prevent tiktoken blocking (#3402) (#3411)
* fix(middleware): offload memory injection off event loop to prevent tiktoken blocking (#3402)

  DynamicContextMiddleware.abefore_agent() called _inject() synchronously
  on the asyncio event loop.  The first time memory is injected (second
  request), _inject() → format_memory_for_injection() → _count_tokens()
  → tiktoken.get_encoding("cl100k_base") needs to download the BPE data
  from openaipublic.blob.core.windows.net.  In network-restricted
  environments this download blocks until the OS TCP timeout (~26 min),
  starving ALL concurrent handlers including /api/v1/auth/me.

  Fix:
  - abefore_agent now uses asyncio.to_thread(self._inject, state) so
    file I/O and tiktoken never block the event loop.
  - Extract _get_tiktoken_encoding() with a module-level cache so
    tiktoken.get_encoding() is called at most once per encoding name.
  - Add warm_tiktoken_cache() startup helper; gateway lifespan pre-warms
    the cache via asyncio.to_thread so the first request never triggers a
    cold download.
  - _count_tokens falls back to len(text) // 4 on any encoding failure.

  Tests:
  - tests/test_tiktoken_cache_and_count_tokens.py (12 tests): cache
    hit/miss, fallback paths, warm-up helper.
  - tests/blocking_io/test_dynamic_context_middleware.py (2 tests):
    Blockbuster gate verifies abefore_agent does not block the event
    loop; async/sync parity check.

  Fixes #3402

* Apply suggestions from code review

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

* fix the lint error

* fix(memory): use future annotations to avoid NameError when tiktoken is absent

Add `from __future__ import annotations` to prompt.py so that
tiktoken.Encoding type hints are never evaluated at runtime.  Without
this, environments where tiktoken is not installed could raise NameError
on the module-level cache and function return annotations.

Addresses Copilot review comment on PR #3411.

* fix(middleware): bound abefore_agent injection with timeout to prevent hung requests

Wrap the asyncio.to_thread(self._inject) offload in asyncio.wait_for()
with a 5-second cap.  If the startup warm-up failed silently (e.g.
network blip during deploy), a cold tiktoken BPE download on the first
request can block until the OS TCP timeout (~26 min).  The bounded
timeout ensures the request degrades gracefully (no memory/date context
for that turn) rather than hanging.

Adds test_abefore_agent_returns_none_on_timeout to the blocking-IO
regression anchors.

Addresses review feedback from xg-gh-25 on PR #3411.

---------

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
2026-06-08 12:21:55 +08:00
Xinmin Zeng
e93f658472
fix(stability): resolve P0 blockers from v2.0-m1-rc1 stability audit (#3107) (#3131)
* fix(task-tool): unwrap callback manager when locating usage recorder

`config["callbacks"]` may arrive as a `BaseCallbackManager` (e.g. the
`AsyncCallbackManager` LangChain hands to async tool runs), not just a plain
list. The previous `for cb in callbacks` loop raised
`TypeError: 'AsyncCallbackManager' object is not iterable`, which
`ToolErrorHandlingMiddleware` then converted into a failed `task` ToolMessage
even though the subagent had completed internally — Ultra mode lost subagent
results and the lead agent fell back to redoing the work.

Unwrap `BaseCallbackManager.handlers` before searching for the recorder.

Refs: bytedance/deer-flow#3107 (BUG-002)

* fix(frontend): treat any task tool error as a terminal subtask failure

The subtask card status machine matched only three English prefixes (`Task
Succeeded. Result:`, `Task failed.`, `Task timed out`). Anything else fell
through to `in_progress`, so a `task` tool error wrapped by
`ToolErrorHandlingMiddleware` (`Error: Tool 'task' failed ...`) left the card
spinning forever even after the run had ended.

Extract the prefix logic into `parseSubtaskResult` and recognise any leading
`Error:` token as a terminal failure. The extracted function is unit-tested
against the legacy prefixes plus the `AsyncCallbackManager` regression
captured in the upstream issue.

Refs: bytedance/deer-flow#3107 (BUG-007)

* fix(frontend): exclude hidden, reasoning, and tool payloads from chat export

`formatThreadAsMarkdown` / `formatThreadAsJSON` iterated raw messages without
running the UI-level `isHiddenFromUIMessage` filter. Exported transcripts
therefore included `hide_from_ui` system reminders, memory injections,
provider `reasoning_content`, tool calls, and tool result messages — content
that is intentionally hidden in the chat view.

Filter the export to the user-visible transcript by default and gate
reasoning / tool calls / tool messages / hidden messages behind explicit
`ExportOptions` flags so a future debug export can opt back in without
forking the formatter.

Refs: bytedance/deer-flow#3107 (BUG-006)

* fix(gateway): route get_config through get_app_config for mtime hot reload

`get_config(request)` returned the `app.state.config` snapshot captured at
startup. The worker / lead-agent path then threaded that frozen `AppConfig`
through `RunContext` and `agent_factory`, so per-run fields edited in
`config.yaml` (notably `max_tokens`) were ignored until the gateway process
was restarted — even though `get_app_config()` already does mtime-based
reload at the bottom layer.

Route the request dependency through `get_app_config()` directly. Runtime
`ContextVar` overrides (`push_current_app_config`) and test-injected
singletons (`set_app_config`) keep working; `app.state.config` is now only
read at startup for one-shot bootstrap (logging level, IM channels,
`langgraph_runtime` engines).

`tests/test_gateway_deps_config.py` encoded the old snapshot contract and is
removed; `tests/test_gateway_config_freshness.py` replaces it with mtime,
ContextVar, and `set_app_config` coverage. `test_skills_custom_router.py` and
`test_uploads_router.py` now inject test configs via FastAPI
`dependency_overrides[get_config]` instead of mutating `app.state.config`.

Document the hot-reload boundary in `backend/CLAUDE.md` so reviewers know
which fields are picked up on the next request vs. which still require a
restart (`database`, `checkpointer`, `run_events`, `stream_bridge`,
`sandbox.use`, `log_level`, `channels.*`).

Refs: bytedance/deer-flow#3107 (BUG-001)

* fix(gateway): broaden get_config 503 to any config-load failure

Address review feedback on the previous commit:

1. Narrow exception catch removed. The old contract returned 503 whenever
   `app.state.config is None`. The first cut only mapped
   `FileNotFoundError`, leaving `PermissionError`, YAML parse errors, and
   pydantic `ValidationError` to bubble up as 500. At the request boundary
   we treat any inability to materialise the config as "configuration not
   available" (503) and log the original exception so the operator still
   has the stack.

2. Removed the unused `request: Request` parameter and the matching
   `# noqa: ARG001`. FastAPI's `Depends()` does not require the dependency
   to accept `Request`; the only call site uses the no-arg form.

3. `backend/CLAUDE.md` boundary now lists the *reason* each field is
   restart-required (engine binding, singleton caching, one-shot
   `apply_logging_level`, etc.), not just the field name, so reviewers do
   not have to reverse-engineer the boundary themselves.

Tests parametrise four exception classes (`FileNotFoundError`,
`PermissionError`, `ValueError`, `RuntimeError`) and assert 503 for each.

Refs: bytedance/deer-flow#3107 (BUG-001)

* fix(task-tool): defend _find_usage_recorder against non-list callbacks

Address review feedback. The previous commit handled the two common shapes
LangChain hands to async tool runs — a plain `list[BaseCallbackHandler]` and
a `BaseCallbackManager` subclass — but iterated any other shape directly,
which would still raise `TypeError` if e.g. a single handler instance leaked
through without a list wrapper.

Treat any non-list, non-manager `config["callbacks"]` value as "no recorder"
rather than crash. Docstring now lists all four shapes explicitly. New tests
cover the single-handler-object case, `runtime is None`, `callbacks is None`,
and `runtime.config` being a non-dict — all required to be silent no-ops.

Refs: bytedance/deer-flow#3107 (BUG-002)

* fix(frontend): drop dead identity ternary and add opt-in export tests

Address review feedback on the previous export commit:

1. Removed the no-op `typeof msg.content === "string" ? msg.content : msg.content`
   expression in `formatThreadAsJSON`. Both branches returned the same value;
   the message content now flows through unchanged whether it is a string or
   the rich `MessageContent[]` shape (LangChain JSON-serialises the array
   structure correctly already).

2. Expanded the JSDoc on `ExportOptions` to make it clearer that the four
   flags are not currently wired to any UI control — callers wanting a debug
   export must build the options object explicitly. The default behaviour
   continues to match the explicit prescription in
   bytedance/deer-flow#3107 BUG-006.

3. Added opt-in coverage. The previous tests only exercised the
   `options = {}` default path; the new cases verify each flag flips the
   corresponding payload back into the export so a future debug-export
   surface does not silently break the contract.

Refs: bytedance/deer-flow#3107 (BUG-006)

* fix(frontend): export subtask prefix constants and document fallback intent

Address review feedback on the previous BUG-007 commit:

1. `SUCCESS_PREFIX`, `FAILURE_PREFIX`, `TIMEOUT_PREFIX`, and the
   `ERROR_WRAPPER_PATTERN` regex are now exported. The JSDoc explicitly
   pins them as part of the backend↔frontend contract defined in
   `task_tool.py` and `tool_error_handling_middleware.py`, so any future
   structured-status migration (e.g. backend writing
   `additional_kwargs.subagent_status` instead of leading text) can
   reference these from one canonical place rather than redefine them.

2. The `in_progress` fallback now carries a docstring explaining the
   deliberate choice — LangChain only ever emits a `ToolMessage` once the
   tool itself has returned, so unrecognised content means the contract
   has drifted and "still running" is the right operator signal (eagerly
   marking it terminal-failed would mask the drift).

No behaviour change; this is documentation and an API export.

Refs: bytedance/deer-flow#3107 (BUG-007)

* fix(gateway): drop app.state.config snapshot and freeze run_events_config

Address @ShenAC-SAC's BUG-001 review on #3131. The previous cut still
stored an ``AppConfig`` snapshot on ``app.state.config`` for startup
bootstrap. Two follow-on hazards from that:

1. Future code touching the gateway lifespan could accidentally start
   reading ``app.state.config`` again, silently regressing the request
   hot path back to a stale snapshot.
2. ``get_run_context()`` paired a freshly-reloaded ``AppConfig`` with the
   startup-bound ``event_store`` and a *live* ``run_events_config``
   field — so an operator who edited ``run_events.backend`` mid-flight
   would have produced a run context whose ``event_store`` and
   ``run_events_config`` referred to different backends.

Clean approach (aligned with the direction in PR #3128):

- ``lifespan()`` keeps a local ``startup_config`` variable and passes it
  explicitly into ``langgraph_runtime(app, startup_config)`` and into
  ``start_channel_service``. No ``app.state.config`` attribute is set at
  any point.
- ``langgraph_runtime`` now accepts ``startup_config`` as a required
  parameter, removing the ``getattr(app.state, "config", None)`` lookup
  and the "config not initialised" runtime error.
- The matching ``run_events_config`` is frozen onto ``app.state`` next
  to ``run_event_store`` so ``get_run_context`` reads the two from the
  same startup-time source. ``app_config`` continues to be resolved
  live via ``get_app_config()``.
- ``backend/CLAUDE.md`` boundary explanation updated to spell out the
  ``startup_config`` / ``get_app_config()`` split.

New regression test ``test_run_context_app_config_reflects_yaml_edit``
exercises the worker-feeding path: it asserts that ``ctx.app_config``
follows a mid-flight ``config.yaml`` edit while
``ctx.run_events_config`` stays frozen to the startup snapshot the
event store was built from.

Refs: bytedance/deer-flow#3107 (BUG-001), bytedance/deer-flow#3131 review

* fix(frontend): parse Task cancelled and polling timed out as terminal

Address @ShenAC-SAC's BUG-007 review on #3131. `task_tool.py` actually
emits five terminal strings:

- `Task Succeeded. Result: …`
- `Task failed. …`
- `Task timed out. …`
- `Task cancelled by user.`               ← previously matched none
- `Task polling timed out after N minutes …` ← previously matched none

The previous cut handled three; the last two fell through to the
"unknown content" branch and pushed the subtask card back to
`in_progress` even though the backend had already reached a terminal
state. Add explicit matches plus regression tests for both. The
`in_progress` fallback is now reserved for genuinely unrecognised
output (i.e. contract drift), as documented.

Refs: bytedance/deer-flow#3107 (BUG-007), bytedance/deer-flow#3131 review

* fix(frontend): sanitize JSON export content via the Markdown content path

Address @ShenAC-SAC's BUG-006 review and the Copilot inline comment on
#3131. The previous cut filtered hidden/tool messages out of the JSON
export but still serialised `msg.content` verbatim, so:

- inline `<think>…</think>` wrappers stayed in the exported `content`
  even with `includeReasoning: false`,
- content-array thinking blocks leaked the `thinking` field,
- `<uploaded_files>…</uploaded_files>` markers leaked the workspace
  paths a user uploaded files to.

JSON now goes through the same sanitiser the Markdown path uses
(`extractContentFromMessage` + `stripUploadedFilesTag`). Reasoning and
tool_calls remain gated behind their `ExportOptions` flags. AI / human
rows that sanitise to empty content with no opted-in reasoning or tool
calls are dropped so the JSON matches the Markdown path's `continue`
on empty assistant fragments.

New regression tests cover the three leak shapes the reviewer called
out plus the empty-content-drop case.

Refs: bytedance/deer-flow#3107 (BUG-006), bytedance/deer-flow#3131 review

* test(gateway): align lifespan stub with langgraph_runtime two-arg signature

Codex round-3 review of c0bc7a06 flagged this: changing
`langgraph_runtime` to require `startup_config` as a second positional
argument broke the one-arg stub `_noop_langgraph_runtime(_app)` in
`test_gateway_lifespan_shutdown.py`, which is patched into
`app.gateway.app.langgraph_runtime` by the lifespan shutdown bounded-timeout
regression. Lifespan would then call the stub with two args and raise
`TypeError` before the bounded-shutdown assertion ran.

Update the stub to match the new signature. The shutdown test itself is
unaffected — it only cares about the channel `stop_channel_service` hang
path.

Refs: bytedance/deer-flow#3107 (BUG-001), bytedance/deer-flow#3131 review

* fix(frontend): strip every known backend marker in export, not just uploads

Codex round-3 review of 258ca800 and the matching maintainer feedback on
PR #3131 made the same point: the JSON export now ran the
Markdown-side sanitiser, but that sanitiser only stripped
`<uploaded_files>`. The full set of payloads middleware embeds inside
message `content` is larger:

- `<uploaded_files>` — `UploadsMiddleware`
- `<system-reminder>` — `DynamicContextMiddleware`
- `<memory>` — `DynamicContextMiddleware` (nested inside system-reminder)
- `<current_date>` — `DynamicContextMiddleware`

The primary protection is still `isHiddenFromUIMessage`: the
`<system-reminder>` HumanMessage is marked `hide_from_ui: true` and never
reaches the formatter. This commit adds the second line of defence so a
regression that drops the `hide_from_ui` flag — or any future middleware
that injects the same tag vocabulary into a visible HumanMessage —
cannot leak the payload into the export file.

Concrete changes:

- New `INTERNAL_MARKER_TAGS` constant + `stripInternalMarkers(content)`
  helper in `core/messages/utils.ts`. The constant doubles as
  documentation for the backend↔frontend contract.
- `formatMessageContent` in `export.ts` now calls `stripInternalMarkers`
  instead of `stripUploadedFilesTag`. UI render paths
  (`message-list-item.tsx`) keep using the narrower function so a user
  legitimately typing `<memory>` in a meta-discussion is preserved.
- The "drop empty rows" guard in `buildJSONMessage` switched from
  `=== undefined` to truthy `!` checks. Codex spotted the asymmetry: when
  `extractReasoningContentFromMessage` returned the empty string (which it
  legitimately can), the JSON path emitted `{reasoning: ""}` while the
  Markdown path's `!reasoning` `continue` correctly dropped the row.

New regression tests cover the defence-in-depth strip with a
`<system-reminder><memory><current_date>` payload deliberately *not*
marked `hide_from_ui`; tool-message sanitization under
`includeToolMessages: true`; the mixed-content-array case
(`thinking + text + image_url`); and the opted-in empty-reasoning drop.

Live verification on a real Ultra-mode thread that uploaded a PDF
(`曾鑫民-薪资交易流水.pdf`): backend state's first HumanMessage carries the
`<uploaded_files>` block (with `/mnt/user-data/uploads/...` paths) as part
of a content-array. The Markdown and JSON export blobs both come back
free of `<uploaded_files>`, `<system-reminder>`, `<current_date>`,
`tool_calls`, and reasoning — while preserving the user's `这是什么 ?`
prompt and the assistant's visible answer.

Refs: bytedance/deer-flow#3107 (BUG-006), bytedance/deer-flow#3131 review

* test(frontend): cover trim, varied N, and pre-execution Error: prefixes

Codex round-3 review of 50e2c257 flagged three coverage gaps in the
subtask-status parser:

1. `Task cancelled by user.` and `Task polling timed out` previously had
   no whitespace-trim coverage — the original trim test only exercised
   the success prefix. Streaming chunks can arrive with leading/trailing
   newlines; the regex needed an explicit assertion.
2. The polling-timeout case was tested only at one `N` (15 minutes). The
   backend interpolates the live `timeout_seconds // 60` value, so the
   matcher must hold for any positive integer. Now we run the case for
   1, 5, and 60 minutes.
3. `task_tool.py` also emits three `Error:` strings for pre-execution
   failures — unknown subagent type, host-bash disabled, and "task
   disappeared from background tasks". They are intentionally handled by
   `ERROR_WRAPPER_PATTERN` rather than dedicated prefixes (the wrapper
   already produces the right terminal-failed shape) but had no test
   coverage proving that wiring. Codex was right that a refactor splitting
   one of them off into its own prefix would silently break things.

The JSDoc on the constants block now spells the three pre-execution
errors out so the relationship between `task_tool.py` returns and the
prefix vocabulary is explicit.

No production code change beyond the docstring — this commit is pure
coverage hardening for the contract that already exists.

Refs: bytedance/deer-flow#3107 (BUG-007), bytedance/deer-flow#3131 review
2026-05-21 21:18:10 +08:00
greatmengqi
f734e14d8b
docs: document auth design and user isolation (#2913)
* docs: document auth design and user isolation

* docs: align auth docs with current storage and reset behavior

---------

Co-authored-by: greatmengqi <chenmengqi.0376@bytedance.com>
2026-05-12 23:07:11 +08:00
AochenShen99
c3bc6c7cd5
fix(nginx): defer CORS to gateway allowlist (#2861)
* fix(nginx): defer cors to gateway allowlist

Remove proxy-level wildcard CORS handling so browser origins are controlled by the Gateway allowlist and stay aligned with CSRF origin checks.

* docs: document gateway cors allowlist

Clarify that same-origin nginx access needs no CORS headers while split-origin or port-forwarded browser clients must opt in with GATEWAY_CORS_ORIGINS.

* docs(gateway): record cors source of truth

Document that Gateway CORSMiddleware and CSRFMiddleware share GATEWAY_CORS_ORIGINS as the split-origin source of truth.

* fix(gateway): align cors origin normalization

* docs: clarify gateway langgraph routing

* docs(gateway): update runtime routing note
2026-05-11 17:38:37 +08:00
He Wang
eba3b9e18d
fix(config): unify log_level from config.yaml across Gateway and debug entry points (#2601)
Centralize log level parsing in `logging_level_from_config()` and
application in `apply_logging_level()` within `deerflow.config.app_config`.

- Gateway lifespan applies configured log level on startup
- `debug.py` uses shared helpers instead of local duplicates
- `apply_logging_level()` targets only `deerflow`/`app` logger hierarchies
  so third-party library verbosity is not affected; root handler levels
  are only lowered (never raised) to allow configured loggers through
  without suppressing third-party output; root logger level is not modified
- Config field description updated to clarify scope
- Tests save/restore global logging state to avoid test pollution

Co-authored-by: Claude Opus 4.7 <noreply@anthropic.com>
2026-04-30 22:27:14 +08:00
sunsine
0691c4dda3
fix(security): allow disabling API docs in production via GATEWAY_ENABLE_DOCS (#2651)
* fix(security): allow disabling API docs in production via GATEWAY_ENABLE_DOCS

Expose /docs, /redoc, and /openapi.json only when GATEWAY_ENABLE_DOCS=true
(default). Setting GATEWAY_ENABLE_DOCS=false disables all three endpoints,
preventing unauthorized API surface discovery in production deployments.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* test(security): add unit tests and docs for GATEWAY_ENABLE_DOCS

Add 7 tests covering default behavior, env var parsing (case-insensitive,
fail-closed), endpoint visibility, and health endpoint independence.
Update CONFIGURATION.md and CLAUDE.md with the new toggle.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* style(security): apply ruff formatting to gateway app.py

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-04-30 10:58:32 +08:00
greatmengqi
b8bc4826d8
refactor: root release config in gateway runtime (#2611)
Co-authored-by: greatmengqi <chenmengqi.0376@bytedance.com>
2026-04-28 00:13:04 +08:00
JeffJiang
da174dfd4d feat: implement process-local internal authentication for Gateway and enhance CSRF handling 2026-04-26 22:20:57 +08:00
Willem Jiang
eba6c0eab2 fix unit tests of test_upload_files and test_shutdown 2026-04-26 22:10:54 +08:00
foreleven
00a90bbd3d refactor: Remove init_token handling from admin initialization logic and related tests 2026-04-26 11:09:56 +08:00
rayhpeng
56d5fa3337 feat(persistence):Unified persistence layer with event store, feedback, and rebase cleanup (#2134)
* feat(persistence): add unified persistence layer with event store, token tracking, and feedback (#1930)

* feat(persistence): add SQLAlchemy 2.0 async ORM scaffold

Introduce a unified database configuration (DatabaseConfig) that
controls both the LangGraph checkpointer and the DeerFlow application
persistence layer from a single `database:` config section.

New modules:
- deerflow.config.database_config — Pydantic config with memory/sqlite/postgres backends
- deerflow.persistence — async engine lifecycle, DeclarativeBase with to_dict mixin, Alembic skeleton
- deerflow.runtime.runs.store — RunStore ABC + MemoryRunStore implementation

Gateway integration initializes/tears down the persistence engine in
the existing langgraph_runtime() context manager. Legacy checkpointer
config is preserved for backward compatibility.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(persistence): add RunEventStore ABC + MemoryRunEventStore

Phase 2-A prerequisite for event storage: adds the unified run event
stream interface (RunEventStore) with an in-memory implementation,
RunEventsConfig, gateway integration, and comprehensive tests (27 cases).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(persistence): add ORM models, repositories, DB/JSONL event stores, RunJournal, and API endpoints

Phase 2-B: run persistence + event storage + token tracking.

- ORM models: RunRow (with token fields), ThreadMetaRow, RunEventRow
- RunRepository implements RunStore ABC via SQLAlchemy ORM
- ThreadMetaRepository with owner access control
- DbRunEventStore with trace content truncation and cursor pagination
- JsonlRunEventStore with per-run files and seq recovery from disk
- RunJournal (BaseCallbackHandler) captures LLM/tool/lifecycle events,
  accumulates token usage by caller type, buffers and flushes to store
- RunManager now accepts optional RunStore for persistent backing
- Worker creates RunJournal, writes human_message, injects callbacks
- Gateway deps use factory functions (RunRepository when DB available)
- New endpoints: messages, run messages, run events, token-usage
- ThreadCreateRequest gains assistant_id field
- 92 tests pass (33 new), zero regressions

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(persistence): add user feedback + follow-up run association

Phase 2-C: feedback and follow-up tracking.

- FeedbackRow ORM model (rating +1/-1, optional message_id, comment)
- FeedbackRepository with CRUD, list_by_run/thread, aggregate stats
- Feedback API endpoints: create, list, stats, delete
- follow_up_to_run_id in RunCreateRequest (explicit or auto-detected
  from latest successful run on the thread)
- Worker writes follow_up_to_run_id into human_message event metadata
- Gateway deps: feedback_repo factory + getter
- 17 new tests (14 FeedbackRepository + 3 follow-up association)
- 109 total tests pass, zero regressions

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* test+config: comprehensive Phase 2 test coverage + deprecate checkpointer config

- config.example.yaml: deprecate standalone checkpointer section, activate
  unified database:sqlite as default (drives both checkpointer + app data)
- New: test_thread_meta_repo.py (14 tests) — full ThreadMetaRepository coverage
  including check_access owner logic, list_by_owner pagination
- Extended test_run_repository.py (+4 tests) — completion preserves fields,
  list ordering desc, limit, owner_none returns all
- Extended test_run_journal.py (+8 tests) — on_chain_error, track_tokens=false,
  middleware no ai_message, unknown caller tokens, convenience fields,
  tool_error, non-summarization custom event
- Extended test_run_event_store.py (+7 tests) — DB batch seq continuity,
  make_run_event_store factory (memory/db/jsonl/fallback/unknown)
- Extended test_phase2b_integration.py (+4 tests) — create_or_reject persists,
  follow-up metadata, summarization in history, full DB-backed lifecycle
- Fixed DB integration test to use proper fake objects (not MagicMock)
  for JSON-serializable metadata
- 157 total Phase 2 tests pass, zero regressions

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* config: move default sqlite_dir to .deer-flow/data

Keep SQLite databases alongside other DeerFlow-managed data
(threads, memory) under the .deer-flow/ directory instead of a
top-level ./data folder.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(persistence): remove UTFJSON, use engine-level json_serializer + datetime.now()

- Replace custom UTFJSON type with standard sqlalchemy.JSON in all ORM
  models. Add json_serializer=json.dumps(ensure_ascii=False) to all
  create_async_engine calls so non-ASCII text (Chinese etc.) is stored
  as-is in both SQLite and Postgres.
- Change ORM datetime defaults from datetime.now(UTC) to datetime.now(),
  remove UTC imports.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(gateway): simplify deps.py with getter factory + inline repos

- Replace 6 identical getter functions with _require() factory.
- Inline 3 _make_*_repo() factories into langgraph_runtime(), call
  get_session_factory() once instead of 3 times.
- Add thread_meta upsert in start_run (services.py).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(docker): add UV_EXTRAS build arg for optional dependencies

Support installing optional dependency groups (e.g. postgres) at
Docker build time via UV_EXTRAS build arg:
  UV_EXTRAS=postgres docker compose build

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(journal): fix flush, token tracking, and consolidate tests

RunJournal fixes:
- _flush_sync: retain events in buffer when no event loop instead of
  dropping them; worker's finally block flushes via async flush().
- on_llm_end: add tool_calls filter and caller=="lead_agent" guard for
  ai_message events; mark message IDs for dedup with record_llm_usage.
- worker.py: persist completion data (tokens, message count) to RunStore
  in finally block.

Model factory:
- Auto-inject stream_usage=True for BaseChatOpenAI subclasses with
  custom api_base, so usage_metadata is populated in streaming responses.

Test consolidation:
- Delete test_phase2b_integration.py (redundant with existing tests).
- Move DB-backed lifecycle test into test_run_journal.py.
- Add tests for stream_usage injection in test_model_factory.py.
- Clean up executor/task_tool dead journal references.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(events): widen content type to str|dict in all store backends

Allow event content to be a dict (for structured OpenAI-format messages)
in addition to plain strings. Dict values are JSON-serialized for the DB
backend and deserialized on read; memory and JSONL backends handle dicts
natively. Trace truncation now serializes dicts to JSON before measuring.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(events): use metadata flag instead of heuristic for dict content detection

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(converters): add LangChain-to-OpenAI message format converters

Pure functions langchain_to_openai_message, langchain_to_openai_completion,
langchain_messages_to_openai, and _infer_finish_reason for converting
LangChain BaseMessage objects to OpenAI Chat Completions format, used by
RunJournal for event storage. 15 unit tests added.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(converters): handle empty list content as null, clean up test

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(events): human_message content uses OpenAI user message format

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(events): ai_message uses OpenAI format, add ai_tool_call message event

- ai_message content now uses {"role": "assistant", "content": "..."} format
- New ai_tool_call message event emitted when lead_agent LLM responds with tool_calls
- ai_tool_call uses langchain_to_openai_message converter for consistent format
- Both events include finish_reason in metadata ("stop" or "tool_calls")

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(events): add tool_result message event with OpenAI tool message format

Cache tool_call_id from on_tool_start keyed by run_id as fallback for on_tool_end,
then emit a tool_result message event (role=tool, tool_call_id, content) after each
successful tool completion.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(events): summary content uses OpenAI system message format

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(events): replace llm_start/llm_end with llm_request/llm_response in OpenAI format

Add on_chat_model_start to capture structured prompt messages as llm_request events.
Replace llm_end trace events with llm_response using OpenAI Chat Completions format.
Track llm_call_index to pair request/response events.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(events): add record_middleware method for middleware trace events

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* test(events): add full run sequence integration test for OpenAI content format

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(events): align message events with checkpoint format and add middleware tag injection

- Message events (ai_message, ai_tool_call, tool_result, human_message) now use
  BaseMessage.model_dump() format, matching LangGraph checkpoint values.messages
- on_tool_end extracts tool_call_id/name/status from ToolMessage objects
- on_tool_error now emits tool_result message events with error status
- record_middleware uses middleware:{tag} event_type and middleware category
- Summarization custom events use middleware:summarize category
- TitleMiddleware injects middleware:title tag via get_config() inheritance
- SummarizationMiddleware model bound with middleware:summarize tag
- Worker writes human_message using HumanMessage.model_dump()

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(threads): switch search endpoint to threads_meta table and sync title

- POST /api/threads/search now queries threads_meta table directly,
  removing the two-phase Store + Checkpointer scan approach
- Add ThreadMetaRepository.search() with metadata/status filters
- Add ThreadMetaRepository.update_display_name() for title sync
- Worker syncs checkpoint title to threads_meta.display_name on run completion
- Map display_name to values.title in search response for API compatibility

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(threads): history endpoint reads messages from event store

- POST /api/threads/{thread_id}/history now combines two data sources:
  checkpointer for checkpoint_id, metadata, title, thread_data;
  event store for messages (complete history, not truncated by summarization)
- Strip internal LangGraph metadata keys from response
- Remove full channel_values serialization in favor of selective fields

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix: remove duplicate optional-dependencies header in pyproject.toml

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(middleware): pass tagged config to TitleMiddleware ainvoke call

Without the config, the middleware:title tag was not injected,
causing the LLM response to be recorded as a lead_agent ai_message
in run_events.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix: resolve merge conflict in .env.example

Keep both DATABASE_URL (from persistence-scaffold) and WECOM
credentials (from main) after the merge.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(persistence): address review feedback on PR #1851

- Fix naive datetime.now() → datetime.now(UTC) in all ORM models
- Fix seq race condition in DbRunEventStore.put() with FOR UPDATE
  and UNIQUE(thread_id, seq) constraint
- Encapsulate _store access in RunManager.update_run_completion()
- Deduplicate _store.put() logic in RunManager via _persist_to_store()
- Add update_run_completion to RunStore ABC + MemoryRunStore
- Wire follow_up_to_run_id through the full create path
- Add error recovery to RunJournal._flush_sync() lost-event scenario
- Add migration note for search_threads breaking change
- Fix test_checkpointer_none_fix mock to set database=None

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* chore: update uv.lock

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(persistence): address 22 review comments from CodeQL, Copilot, and Code Quality

Bug fixes:
- Sanitize log params to prevent log injection (CodeQL)
- Reset threads_meta.status to idle/error when run completes
- Attach messages only to latest checkpoint in /history response
- Write threads_meta on POST /threads so new threads appear in search

Lint fixes:
- Remove unused imports (journal.py, migrations/env.py, test_converters.py)
- Convert lambda to named function (engine.py, Ruff E731)
- Remove unused logger definitions in repos (Ruff F841)
- Add logging to JSONL decode errors and empty except blocks
- Separate assert side-effects in tests (CodeQL)
- Remove unused local variables in tests (Ruff F841)
- Fix max_trace_content truncation to use byte length, not char length

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* style: apply ruff format to persistence and runtime files

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* Potential fix for pull request finding 'Statement has no effect'

Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com>

* refactor(runtime): introduce RunContext to reduce run_agent parameter bloat

Extract checkpointer, store, event_store, run_events_config, thread_meta_repo,
and follow_up_to_run_id into a frozen RunContext dataclass. Add get_run_context()
in deps.py to build the base context from app.state singletons. start_run() uses
dataclasses.replace() to enrich per-run fields before passing ctx to run_agent.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(gateway): move sanitize_log_param to app/gateway/utils.py

Extract the log-injection sanitizer from routers/threads.py into a shared
utils module and rename to sanitize_log_param (public API). Eliminates the
reverse service → router import in services.py.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* perf: use SQL aggregation for feedback stats and thread token usage

Replace Python-side counting in FeedbackRepository.aggregate_by_run with
a single SELECT COUNT/SUM query. Add RunStore.aggregate_tokens_by_thread
abstract method with SQL GROUP BY implementation in RunRepository and
Python fallback in MemoryRunStore. Simplify the thread_token_usage
endpoint to delegate to the new method, eliminating the limit=10000
truncation risk.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* docs: annotate DbRunEventStore.put() as low-frequency path

Add docstring clarifying that put() opens a per-call transaction with
FOR UPDATE and should only be used for infrequent writes (currently
just the initial human_message event). High-throughput callers should
use put_batch() instead.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(threads): fall back to Store search when ThreadMetaRepository is unavailable

When database.backend=memory (default) or no SQL session factory is
configured, search_threads now queries the LangGraph Store instead of
returning 503. Returns empty list if neither Store nor repo is available.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(persistence): introduce ThreadMetaStore ABC for backend-agnostic thread metadata

Add ThreadMetaStore abstract base class with create/get/search/update/delete
interface. ThreadMetaRepository (SQL) now inherits from it. New
MemoryThreadMetaStore wraps LangGraph BaseStore for memory-mode deployments.

deps.py now always provides a non-None thread_meta_repo, eliminating all
`if thread_meta_repo is not None` guards in services.py, worker.py, and
routers/threads.py. search_threads no longer needs a Store fallback branch.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(history): read messages from checkpointer instead of RunEventStore

The /history endpoint now reads messages directly from the
checkpointer's channel_values (the authoritative source) instead of
querying RunEventStore.list_messages(). The RunEventStore API is
preserved for other consumers.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(persistence): address new Copilot review comments

- feedback.py: validate thread_id/run_id before deleting feedback
- jsonl.py: add path traversal protection with ID validation
- run_repo.py: parse `before` to datetime for PostgreSQL compat
- thread_meta_repo.py: fix pagination when metadata filter is active
- database_config.py: use resolve_path for sqlite_dir consistency

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* Implement skill self-evolution and skill_manage flow (#1874)

* chore: ignore .worktrees directory

* Add skill_manage self-evolution flow

* Fix CI regressions for skill_manage

* Address PR review feedback for skill evolution

* fix(skill-evolution): preserve history on delete

* fix(skill-evolution): tighten scanner fallbacks

* docs: add skill_manage e2e evidence screenshot

* fix(skill-manage): avoid blocking fs ops in session runtime

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>

* fix(config): resolve sqlite_dir relative to CWD, not Paths.base_dir

resolve_path() resolves relative to Paths.base_dir (.deer-flow),
which double-nested the path to .deer-flow/.deer-flow/data/app.db.
Use Path.resolve() (CWD-relative) instead.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* Feature/feishu receive file (#1608)

* feat(feishu): add channel file materialization hook for inbound messages

- Introduce Channel.receive_file(msg, thread_id) as a base method for file materialization; default is no-op.
- Implement FeishuChannel.receive_file to download files/images from Feishu messages, save to sandbox, and inject virtual paths into msg.text.
- Update ChannelManager to call receive_file for any channel if msg.files is present, enabling downstream model access to user-uploaded files.
- No impact on Slack/Telegram or other channels (they inherit the default no-op).

* style(backend): format code with ruff for lint compliance

- Auto-formatted packages/harness/deerflow/agents/factory.py and tests/test_create_deerflow_agent.py using `ruff format`
- Ensured both files conform to project linting standards
- Fixes CI lint check failures caused by code style issues

* fix(feishu): handle file write operation asynchronously to prevent blocking

* fix(feishu): rename GetMessageResourceRequest to _GetMessageResourceRequest and remove redundant code

* test(feishu): add tests for receive_file method and placeholder replacement

* fix(manager): remove unnecessary type casting for channel retrieval

* fix(feishu): update logging messages to reflect resource handling instead of image

* fix(feishu): sanitize filename by replacing invalid characters in file uploads

* fix(feishu): improve filename sanitization and reorder image key handling in message processing

* fix(feishu): add thread lock to prevent filename conflicts during file downloads

* fix(test): correct bad merge in test_feishu_parser.py

* chore: run ruff and apply formatting cleanup
fix(feishu): preserve rich-text attachment order and improve fallback filename handling

* fix(docker): restore gateway env vars and fix langgraph empty arg issue (#1915)

Two production docker-compose.yaml bugs prevent `make up` from working:

1. Gateway missing DEER_FLOW_CONFIG_PATH and DEER_FLOW_EXTENSIONS_CONFIG_PATH
   environment overrides. Added in fb2d99f (#1836) but accidentally reverted
   by ca2fb95 (#1847). Without them, gateway reads host paths from .env via
   env_file, causing FileNotFoundError inside the container.

2. Langgraph command fails when LANGGRAPH_ALLOW_BLOCKING is unset (default).
   Empty $${allow_blocking} inserts a bare space between flags, causing
   ' --no-reload' to be parsed as unexpected extra argument. Fix by building
   args string first and conditionally appending --allow-blocking.

Co-authored-by: cooper <cooperfu@tencent.com>

* fix(frontend): resolve invalid HTML nesting and tabnabbing vulnerabilities (#1904)

* fix(frontend): resolve invalid HTML nesting and tabnabbing vulnerabilities

Fix `<button>` inside `<a>` invalid HTML in artifact components and add
missing `noopener,noreferrer` to `window.open` calls to prevent reverse
tabnabbing.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix(frontend): address Copilot review on tabnabbing and double-tab-open

Remove redundant parent onClick on web_fetch ChainOfThoughtStep to
prevent opening two tabs on link click, and explicitly null out
window.opener after window.open() for defensive tabnabbing hardening.

---------

Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>

* refactor(persistence): organize entities into per-entity directories

Restructure the persistence layer from horizontal "models/ + repositories/"
split into vertical entity-aligned directories. Each entity (thread_meta,
run, feedback) now owns its ORM model, abstract interface (where applicable),
and concrete implementations under a single directory with an aggregating
__init__.py for one-line imports.

Layout:
  persistence/thread_meta/{base,model,sql,memory}.py
  persistence/run/{model,sql}.py
  persistence/feedback/{model,sql}.py

models/__init__.py is kept as a facade so Alembic autogenerate continues to
discover all ORM tables via Base.metadata. RunEventRow remains under
models/run_event.py because its storage implementation lives in
runtime/events/store/db.py and has no matching repository directory.

The repositories/ directory is removed entirely. All call sites in
gateway/deps.py and tests are updated to import from the new entity
packages, e.g.:

    from deerflow.persistence.thread_meta import ThreadMetaRepository
    from deerflow.persistence.run import RunRepository
    from deerflow.persistence.feedback import FeedbackRepository

Full test suite passes (1690 passed, 14 skipped).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(gateway): sync thread rename and delete through ThreadMetaStore

The POST /threads/{id}/state endpoint previously synced title changes
only to the LangGraph Store via _store_upsert. In sqlite mode the search
endpoint reads from the ThreadMetaRepository SQL table, so renames never
appeared in /threads/search until the next agent run completed (worker.py
syncs title from checkpoint to thread_meta in its finally block).

Likewise the DELETE /threads/{id} endpoint cleaned up the filesystem,
Store, and checkpointer but left the threads_meta row orphaned in sqlite,
so deleted threads kept appearing in /threads/search.

Fix both endpoints by routing through the ThreadMetaStore abstraction
which already has the correct sqlite/memory implementations wired up by
deps.py. The rename path now calls update_display_name() and the delete
path calls delete() — both work uniformly across backends.

Verified end-to-end with curl in gateway mode against sqlite backend.
Existing test suite (1690 passed) and focused router/repo tests pass.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(gateway): route all thread metadata access through ThreadMetaStore

Following the rename/delete bug fix in PR1, migrate the remaining direct
LangGraph Store reads/writes in the threads router and services to the
ThreadMetaStore abstraction so that the sqlite and memory backends behave
identically and the legacy dual-write paths can be removed.

Migrated endpoints (threads.py):
- create_thread: idempotency check + write now use thread_meta_repo.get/create
  instead of dual-writing the LangGraph Store and the SQL row.
- get_thread: reads from thread_meta_repo.get; the checkpoint-only fallback
  for legacy threads is preserved.
- patch_thread: replaced _store_get/_store_put with thread_meta_repo.update_metadata.
- delete_thread_data: dropped the legacy store.adelete; thread_meta_repo.delete
  already covers it.

Removed dead code (services.py):
- _upsert_thread_in_store — redundant with the immediately following
  thread_meta_repo.create() call.
- _sync_thread_title_after_run — worker.py's finally block already syncs
  the title via thread_meta_repo.update_display_name() after each run.

Removed dead code (threads.py):
- _store_get / _store_put / _store_upsert helpers (no remaining callers).
- THREADS_NS constant.
- get_store import (router no longer touches the LangGraph Store directly).

New abstract method:
- ThreadMetaStore.update_metadata(thread_id, metadata) merges metadata into
  the thread's metadata field. Implemented in both ThreadMetaRepository (SQL,
  read-modify-write inside one session) and MemoryThreadMetaStore. Three new
  unit tests cover merge / empty / nonexistent behaviour.

Net change: -134 lines. Full test suite: 1693 passed, 14 skipped.
Verified end-to-end with curl in gateway mode against sqlite backend
(create / patch / get / rename / search / delete).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com>
Co-authored-by: DanielWalnut <45447813+hetaoBackend@users.noreply.github.com>
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
Co-authored-by: JilongSun <965640067@qq.com>
Co-authored-by: jie <49781832+stan-fu@users.noreply.github.com>
Co-authored-by: cooper <cooperfu@tencent.com>
Co-authored-by: yangzheli <43645580+yangzheli@users.noreply.github.com>

* feat(auth): release-validation pass for 2.0-rc — 12 blockers + simplify follow-ups (#2008)

* feat(auth): introduce backend auth module

Port RFC-001 authentication core from PR #1728:
- JWT token handling (create_access_token, decode_token, TokenPayload)
- Password hashing (bcrypt) with verify_password
- SQLite UserRepository with base interface
- Provider Factory pattern (LocalAuthProvider)
- CLI reset_admin tool
- Auth-specific errors (AuthErrorCode, TokenError, AuthErrorResponse)

Deps:
- bcrypt>=4.0.0
- pyjwt>=2.9.0
- email-validator>=2.0.0
- backend/uv.toml pins public PyPI index

Tests: 12 pure unit tests (test_auth_config.py, test_auth_errors.py).

Scope note: authz.py, test_auth.py, and test_auth_type_system.py are
deferred to commit 2 because they depend on middleware and deps wiring
that is not yet in place. Commit 1 stays "pure new files only" as the
spec mandates.

* feat(auth): wire auth end-to-end (middleware + frontend replacement)

Backend:
- Port auth_middleware, csrf_middleware, langgraph_auth, routers/auth
- Port authz decorator (owner_filter_key defaults to 'owner_id')
- Merge app.py: register AuthMiddleware + CSRFMiddleware + CORS, add
  _ensure_admin_user lifespan hook, _migrate_orphaned_threads helper,
  register auth router
- Merge deps.py: add get_local_provider, get_current_user_from_request,
  get_optional_user_from_request; keep get_current_user as thin str|None
  adapter for feedback router
- langgraph.json: add auth path pointing to langgraph_auth.py:auth
- Rename metadata['user_id'] -> metadata['owner_id'] in langgraph_auth
  (both metadata write and LangGraph filter dict) + test fixtures

Frontend:
- Delete better-auth library and api catch-all route
- Remove better-auth npm dependency and env vars (BETTER_AUTH_SECRET,
  BETTER_AUTH_GITHUB_*) from env.js
- Port frontend/src/core/auth/* (AuthProvider, gateway-config,
  proxy-policy, server-side getServerSideUser, types)
- Port frontend/src/core/api/fetcher.ts
- Port (auth)/layout, (auth)/login, (auth)/setup pages
- Rewrite workspace/layout.tsx as server component that calls
  getServerSideUser and wraps in AuthProvider
- Port workspace/workspace-content.tsx for the client-side sidebar logic

Tests:
- Port 5 auth test files (test_auth, test_auth_middleware,
  test_auth_type_system, test_ensure_admin, test_langgraph_auth)
- 176 auth tests PASS

After this commit: login/logout/registration flow works, but persistence
layer does not yet filter by owner_id. Commit 4 closes that gap.

* feat(auth): account settings page + i18n

- Port account-settings-page.tsx (change password, change email, logout)
- Wire into settings-dialog.tsx as new "account" section with UserIcon,
  rendered first in the section list
- Add i18n keys:
  - en-US/zh-CN: settings.sections.account ("Account" / "账号")
  - en-US/zh-CN: button.logout ("Log out" / "退出登录")
  - types.ts: matching type declarations

* feat(auth): enforce owner_id across 2.0-rc persistence layer

Add request-scoped contextvar-based owner filtering to threads_meta,
runs, run_events, and feedback repositories. Router code is unchanged
— isolation is enforced at the storage layer so that any caller that
forgets to pass owner_id still gets filtered results, and new routes
cannot accidentally leak data.

Core infrastructure
-------------------
- deerflow/runtime/user_context.py (new):
  - ContextVar[CurrentUser | None] with default None
  - runtime_checkable CurrentUser Protocol (structural subtype with .id)
  - set/reset/get/require helpers
  - AUTO sentinel + resolve_owner_id(value, method_name) for sentinel
    three-state resolution: AUTO reads contextvar, explicit str
    overrides, explicit None bypasses the filter (for migration/CLI)

Repository changes
------------------
- ThreadMetaRepository: create/get/search/update_*/delete gain
  owner_id=AUTO kwarg; read paths filter by owner, writes stamp it,
  mutations check ownership before applying
- RunRepository: put/get/list_by_thread/delete gain owner_id=AUTO kwarg
- FeedbackRepository: create/get/list_by_run/list_by_thread/delete
  gain owner_id=AUTO kwarg
- DbRunEventStore: list_messages/list_events/list_messages_by_run/
  count_messages/delete_by_thread/delete_by_run gain owner_id=AUTO
  kwarg. Write paths (put/put_batch) read contextvar softly: when a
  request-scoped user is available, owner_id is stamped; background
  worker writes without a user context pass None which is valid
  (orphan row to be bound by migration)

Schema
------
- persistence/models/run_event.py: RunEventRow.owner_id = Mapped[
  str | None] = mapped_column(String(64), nullable=True, index=True)
- No alembic migration needed: 2.0 ships fresh, Base.metadata.create_all
  picks up the new column automatically

Middleware
----------
- auth_middleware.py: after cookie check, call get_optional_user_from_
  request to load the real User, stamp it into request.state.user AND
  the contextvar via set_current_user, reset in a try/finally. Public
  paths and unauthenticated requests continue without contextvar, and
  @require_auth handles the strict 401 path

Test infrastructure
-------------------
- tests/conftest.py: @pytest.fixture(autouse=True) _auto_user_context
  sets a default SimpleNamespace(id="test-user-autouse") on every test
  unless marked @pytest.mark.no_auto_user. Keeps existing 20+
  persistence tests passing without modification
- pyproject.toml [tool.pytest.ini_options]: register no_auto_user
  marker so pytest does not emit warnings for opt-out tests
- tests/test_user_context.py: 6 tests covering three-state semantics,
  Protocol duck typing, and require/optional APIs
- tests/test_thread_meta_repo.py: one test updated to pass owner_id=
  None explicitly where it was previously relying on the old default

Test results
------------
- test_user_context.py: 6 passed
- test_auth*.py + test_langgraph_auth.py + test_ensure_admin.py: 127
- test_run_event_store / test_run_repository / test_thread_meta_repo
  / test_feedback: 92 passed
- Full backend suite: 1905 passed, 2 failed (both @requires_llm flaky
  integration tests unrelated to auth), 1 skipped

* feat(auth): extend orphan migration to 2.0-rc persistence tables

_ensure_admin_user now runs a three-step pipeline on every boot:

  Step 1 (fatal):     admin user exists / is created / password is reset
  Step 2 (non-fatal): LangGraph store orphan threads → admin
  Step 3 (non-fatal): SQL persistence tables → admin
    - threads_meta
    - runs
    - run_events
    - feedback

Each step is idempotent. The fatal/non-fatal split mirrors PR #1728's
original philosophy: admin creation failure blocks startup (the system
is unusable without an admin), whereas migration failures log a warning
and let the service proceed (a partial migration is recoverable; a
missing admin is not).

Key helpers
-----------
- _iter_store_items(store, namespace, *, page_size=500):
  async generator that cursor-paginates across LangGraph store pages.
  Fixes PR #1728's hardcoded limit=1000 bug that would silently lose
  orphans beyond the first page.

- _migrate_orphaned_threads(store, admin_user_id):
  Rewritten to use _iter_store_items. Returns the migrated count so the
  caller can log it; raises only on unhandled exceptions.

- _migrate_orphan_sql_tables(admin_user_id):
  Imports the 4 ORM models lazily, grabs the shared session factory,
  runs one UPDATE per table in a single transaction, commits once.
  No-op when no persistence backend is configured (in-memory dev).

Tests: test_ensure_admin.py (8 passed)

* test(auth): port AUTH test plan docs + lint/format pass

- Port backend/docs/AUTH_TEST_PLAN.md and AUTH_UPGRADE.md from PR #1728
- Rename metadata.user_id → metadata.owner_id in AUTH_TEST_PLAN.md
  (4 occurrences from the original PR doc)
- ruff auto-fix UP037 in sentinel type annotations: drop quotes around
  "str | None | _AutoSentinel" now that from __future__ import
  annotations makes them implicit string forms
- ruff format: 2 files (app/gateway/app.py, runtime/user_context.py)

Note on test coverage additions:
- conftest.py autouse fixture was already added in commit 4 (had to
  be co-located with the repository changes to keep pre-existing
  persistence tests passing)
- cross-user isolation E2E tests (test_owner_isolation.py) deferred
  — enforcement is already proven by the 98-test repository suite
  via the autouse fixture + explicit _AUTO sentinel exercises
- New test cases (TC-API-17..20, TC-ATK-13, TC-MIG-01..07) listed
  in AUTH_TEST_PLAN.md are deferred to a follow-up PR — they are
  manual-QA test cases rather than pytest code, and the spec-level
  coverage is already met by test_user_context.py + the 98-test
  repository suite.

Final test results:
- Auth suite (test_auth*, test_langgraph_auth, test_ensure_admin,
  test_user_context): 186 passed
- Persistence suite (test_run_event_store, test_run_repository,
  test_thread_meta_repo, test_feedback): 98 passed
- Lint: ruff check + ruff format both clean

* test(auth): add cross-user isolation test suite

10 tests exercising the storage-layer owner filter by manually
switching the user_context contextvar between two users. Verifies
the safety invariant:

  After a repository write with owner_id=A, a subsequent read with
  owner_id=B must not return the row, and vice versa.

Covers all 4 tables that own user-scoped data:

TC-API-17  threads_meta  — read, search, update, delete cross-user
TC-API-18  runs          — get, list_by_thread, delete cross-user
TC-API-19  run_events    — list_messages, list_events, count_messages,
                           delete_by_thread (CRITICAL: raw conversation
                           content leak vector)
TC-API-20  feedback      — get, list_by_run, delete cross-user

Plus two meta-tests verifying the sentinel pattern itself:
- AUTO + unset contextvar raises RuntimeError
- explicit owner_id=None bypasses the filter (migration escape hatch)

Architecture note
-----------------
These tests bypass the HTTP layer by design. The full chain
(cookie → middleware → contextvar → repository) is covered piecewise:

- test_auth_middleware.py: middleware sets contextvar from cookies
- test_owner_isolation.py: repositories enforce isolation when
  contextvar is set to different users

Together they prove the end-to-end safety property without the
ceremony of spinning up a full TestClient + in-memory DB for every
router endpoint.

Tests pass: 231 (full auth + persistence + isolation suite)
Lint: clean

* refactor(auth): migrate user repository to SQLAlchemy ORM

Move the users table into the shared persistence engine so auth
matches the pattern of threads_meta, runs, run_events, and feedback —
one engine, one session factory, one schema init codepath.

New files
---------
- persistence/user/__init__.py, persistence/user/model.py: UserRow
  ORM class with partial unique index on (oauth_provider, oauth_id)
- Registered in persistence/models/__init__.py so
  Base.metadata.create_all() picks it up

Modified
--------
- auth/repositories/sqlite.py: rewritten as async SQLAlchemy,
  identical constructor pattern to the other four repositories
  (def __init__(self, session_factory) + self._sf = session_factory)
- auth/config.py: drop users_db_path field — storage is configured
  through config.database like every other table
- deps.py/get_local_provider: construct SQLiteUserRepository with
  the shared session factory, fail fast if engine is not initialised
- tests/test_auth.py: rewrite test_sqlite_round_trip_new_fields to
  use the shared engine (init_engine + close_engine in a tempdir)
- tests/test_auth_type_system.py: add per-test autouse fixture that
  spins up a scratch engine and resets deps._cached_* singletons

* refactor(auth): remove SQL orphan migration (unused in supported scenarios)

The _migrate_orphan_sql_tables helper existed to bind NULL owner_id
rows in threads_meta, runs, run_events, and feedback to the admin on
first boot. But in every supported upgrade path, it's a no-op:

  1. Fresh install: create_all builds fresh tables, no legacy rows
  2. No-auth → with-auth (no existing persistence DB): persistence
     tables are created fresh by create_all, no legacy rows
  3. No-auth → with-auth (has existing persistence DB from #1930):
     NOT a supported upgrade path — "有 DB 到有 DB" schema evolution
     is out of scope; users wipe DB or run manual ALTER

So the SQL orphan migration never has anything to do in the
supported matrix. Delete the function, simplify _ensure_admin_user
from a 3-step pipeline to a 2-step one (admin creation + LangGraph
store orphan migration only).

LangGraph store orphan migration stays: it serves the real
"no-auth → with-auth" upgrade path where a user's existing LangGraph
thread metadata has no owner_id field and needs to be stamped with
the newly-created admin's id.

Tests: 284 passed (auth + persistence + isolation)
Lint: clean

* security(auth): write initial admin password to 0600 file instead of logs

CodeQL py/clear-text-logging-sensitive-data flagged 3 call sites that
logged the auto-generated admin password to stdout via logger.info().
Production log aggregators (ELK/Splunk/etc) would have captured those
cleartext secrets. Replace with a shared helper that writes to
.deer-flow/admin_initial_credentials.txt with mode 0600, and log only
the path.

New file
--------
- app/gateway/auth/credential_file.py: write_initial_credentials()
  helper. Takes email, password, and a "initial"/"reset" label.
  Creates .deer-flow/ if missing, writes a header comment plus the
  email+password, chmods 0o600, returns the absolute Path.

Modified
--------
- app/gateway/app.py: both _ensure_admin_user paths (fresh creation
  + needs_setup password reset) now write to file and log the path
- app/gateway/auth/reset_admin.py: rewritten to use the shared ORM
  repo (SQLiteUserRepository with session_factory) and the
  credential_file helper. The previous implementation was broken
  after the earlier ORM refactor — it still imported _get_users_conn
  and constructed SQLiteUserRepository() without a session factory.

No tests changed — the three password-log sites are all exercised
via existing test_ensure_admin.py which checks that startup
succeeds, not that a specific string appears in logs.

CodeQL alerts 272, 283, 284: all resolved.

* security(auth): strict JWT validation in middleware (fix junk cookie bypass)

AUTH_TEST_PLAN test 7.5.8 expects junk cookies to be rejected with
401. The previous middleware behaviour was "presence-only": check
that some access_token cookie exists, then pass through. In
combination with my Task-12 decision to skip @require_auth
decorators on routes, this created a gap where a request with any
cookie-shaped string (e.g. access_token=not-a-jwt) would bypass
authentication on routes that do not touch the repository
(/api/models, /api/mcp/config, /api/memory, /api/skills, …).

Fix: middleware now calls get_current_user_from_request() strictly
and catches the resulting HTTPException to render a 401 with the
proper fine-grained error code (token_invalid, token_expired,
user_not_found, …). On success it stamps request.state.user and
the contextvar so repository-layer owner filters work downstream.

The 4 old "_with_cookie_passes" tests in test_auth_middleware.py
were written for the presence-only behaviour; they asserted that
a junk cookie would make the handler return 200. They are renamed
to "_with_junk_cookie_rejected" and their assertions flipped to
401. The negative path (no cookie → 401 not_authenticated)
is unchanged.

Verified:
  no cookie       → 401 not_authenticated
  junk cookie     → 401 token_invalid     (the fixed bug)
  expired cookie  → 401 token_expired

Tests: 284 passed (auth + persistence + isolation)
Lint: clean

* security(auth): wire @require_permission(owner_check=True) on isolation routes

Apply the require_permission decorator to all 28 routes that take a
{thread_id} path parameter. Combined with the strict middleware
(previous commit), this gives the double-layer protection that
AUTH_TEST_PLAN test 7.5.9 documents:

  Layer 1 (AuthMiddleware): cookie + JWT validation, rejects junk
                            cookies and stamps request.state.user
  Layer 2 (@require_permission with owner_check=True): per-resource
                            ownership verification via
                            ThreadMetaStore.check_access — returns
                            404 if a different user owns the thread

The decorator's owner_check branch is rewritten to use the SQL
thread_meta_repo (the 2.0-rc persistence layer) instead of the
LangGraph store path that PR #1728 used (_store_get / get_store
in routers/threads.py). The inject_record convenience is dropped
— no caller in 2.0 needs the LangGraph blob, and the SQL repo has
a different shape.

Routes decorated (28 total):
- threads.py: delete, patch, get, get-state, post-state, post-history
- thread_runs.py: post-runs, post-runs-stream, post-runs-wait,
  list_runs, get_run, cancel_run, join_run, stream_existing_run,
  list_thread_messages, list_run_messages, list_run_events,
  thread_token_usage
- feedback.py: create, list, stats, delete
- uploads.py: upload (added Request param), list, delete
- artifacts.py: get_artifact
- suggestions.py: generate (renamed body parameter to avoid
  conflict with FastAPI Request)

Test fixes:
- test_suggestions_router.py: bypass the decorator via __wrapped__
  (the unit tests cover parsing logic, not auth — no point spinning
  up a thread_meta_repo just to test JSON unwrapping)
- test_auth_middleware.py 4 fake-cookie tests: already updated in
  the previous commit (745bf432)

Tests: 293 passed (auth + persistence + isolation + suggestions)
Lint: clean

* security(auth): defense-in-depth fixes from release validation pass

Eight findings caught while running the AUTH_TEST_PLAN end-to-end against
the deployed sg_dev stack. Each is a pre-condition for shipping
release/2.0-rc that the previous PRs missed.

Backend hardening
- routers/auth.py: rate limiter X-Real-IP now requires AUTH_TRUSTED_PROXIES
  whitelist (CIDR/IP allowlist). Without nginx in front, the previous code
  honored arbitrary X-Real-IP, letting an attacker rotate the header to
  fully bypass the per-IP login lockout.
- routers/auth.py: 36-entry common-password blocklist via Pydantic
  field_validator on RegisterRequest + ChangePasswordRequest. The shared
  _validate_strong_password helper keeps the constraint in one place.
- routers/threads.py: ThreadCreateRequest + ThreadPatchRequest strip
  server-reserved metadata keys (owner_id, user_id) via Pydantic
  field_validator so a forged value can never round-trip back to other
  clients reading the same thread. The actual ownership invariant stays
  on the threads_meta row; this closes the metadata-blob echo gap.
- authz.py + thread_meta/sql.py: require_permission gains a require_existing
  flag plumbed through check_access(require_existing=True). Destructive
  routes (DELETE/PATCH/state-update/runs/feedback) now treat a missing
  thread_meta row as 404 instead of "untracked legacy thread, allow",
  closing the cross-user delete-idempotence gap where any user could
  successfully DELETE another user's deleted thread.
- repositories/sqlite.py + base.py: update_user raises UserNotFoundError
  on a vanished row instead of silently returning the input. Concurrent
  delete during password reset can no longer look like a successful update.
- runtime/user_context.py: resolve_owner_id() coerces User.id (UUID) to
  str at the contextvar boundary so SQLAlchemy String(64) columns can
  bind it. The whole 2.0-rc isolation pipeline was previously broken
  end-to-end (POST /api/threads → 500 "type 'UUID' is not supported").
- persistence/engine.py: SQLAlchemy listener enables PRAGMA journal_mode=WAL,
  synchronous=NORMAL, foreign_keys=ON on every new SQLite connection.
  TC-UPG-06 in the test plan expects WAL; previous code shipped with the
  default 'delete' journal.
- auth_middleware.py: stamp request.state.auth = AuthContext(...) so
  @require_permission's short-circuit fires; previously every isolation
  request did a duplicate JWT decode + users SELECT. Also unifies the
  401 payload through AuthErrorResponse(...).model_dump().
- app.py: _ensure_admin_user restructure removes the noqa F821 scoping
  bug where 'password' was referenced outside the branch that defined it.
  New _announce_credentials helper absorbs the duplicate log block in
  the fresh-admin and reset-admin branches.

* fix(frontend+nginx): rollout CSRF on every state-changing client path

The frontend was 100% broken in gateway-pro mode for any user trying to
open a specific chat thread. Three cumulative bugs each silently
masked the next.

LangGraph SDK CSRF gap (api-client.ts)
- The Client constructor took only apiUrl, no defaultHeaders, no fetch
  interceptor. The SDK's internal fetch never sent X-CSRF-Token, so
  every state-changing /api/langgraph-compat/* call (runs/stream,
  threads/search, threads/{tid}/history, ...) hit CSRFMiddleware and
  got 403 before reaching the auth check. UI symptom: empty thread page
  with no error message; the SPA's hooks swallowed the rejection.
- Fix: pass an onRequest hook that injects X-CSRF-Token from the
  csrf_token cookie per request. Reading the cookie per call (not at
  construction time) handles login / logout / password-change cookie
  rotation transparently. The SDK's prepareFetchOptions calls
  onRequest for both regular requests AND streaming/SSE/reconnect, so
  the same hook covers runs.stream and runs.joinStream.

Raw fetch CSRF gap (7 files)
- Audit: 11 frontend fetch sites, only 2 included CSRF (login/setup +
  account-settings change-password). The other 7 routed through raw
  fetch() with no header — suggestions, memory, agents, mcp, skills,
  uploads, and the local thread cleanup hook all 403'd silently.
- Fix: enhance fetcher.ts:fetchWithAuth to auto-inject X-CSRF-Token on
  POST/PUT/DELETE/PATCH from a single shared readCsrfCookie() helper.
  Convert all 7 raw fetch() callers to fetchWithAuth so the contract
  is centrally enforced. api-client.ts and fetcher.ts share
  readCsrfCookie + STATE_CHANGING_METHODS to avoid drift.

nginx routing + buffering (nginx.local.conf)
- The auth feature shipped without updating the nginx config: per-API
  explicit location blocks but no /api/v1/auth/, /api/feedback, /api/runs.
  The frontend's client-side fetches to /api/v1/auth/login/local 404'd
  from the Next.js side because nginx routed /api/* to the frontend.
- Fix: add catch-all `location /api/` that proxies to the gateway.
  nginx longest-prefix matching keeps the explicit blocks (/api/models,
  /api/threads regex, /api/langgraph/, ...) winning for their paths.
- Fix: disable proxy_buffering + proxy_request_buffering for the
  frontend `location /` block. Without it, nginx tries to spool large
  Next.js chunks into /var/lib/nginx/proxy (root-owned) and fails with
  Permission denied → ERR_INCOMPLETE_CHUNKED_ENCODING → ChunkLoadError.

* test(auth): release-validation test infra and new coverage

Test fixtures and unit tests added during the validation pass.

Router test helpers (NEW: tests/_router_auth_helpers.py)
- make_authed_test_app(): builds a FastAPI test app with a stub
  middleware that stamps request.state.user + request.state.auth and a
  permissive thread_meta_repo mock. TestClient-based router tests
  (test_artifacts_router, test_threads_router) use it instead of bare
  FastAPI() so the new @require_permission(owner_check=True) decorators
  short-circuit cleanly.
- call_unwrapped(): walks the __wrapped__ chain to invoke the underlying
  handler without going through the authz wrappers. Direct-call tests
  (test_uploads_router) use it. Typed with ParamSpec so the wrapped
  signature flows through.

Backend test additions
- test_auth.py: 7 tests for the new _get_client_ip trust model (no
  proxy / trusted proxy / untrusted peer / XFF rejection / invalid
  CIDR / no client). 5 tests for the password blocklist (literal,
  case-insensitive, strong password accepted, change-password binding,
  short-password length-check still fires before blocklist).
  test_update_user_raises_when_row_concurrently_deleted: closes a
  shipped-without-coverage gap on the new UserNotFoundError contract.
- test_thread_meta_repo.py: 4 tests for check_access(require_existing=True)
  — strict missing-row denial, strict owner match, strict owner mismatch,
  strict null-owner still allowed (shared rows survive the tightening).
- test_ensure_admin.py: 3 tests for _migrate_orphaned_threads /
  _iter_store_items pagination, covering the TC-UPG-02 upgrade story
  end-to-end via mock store. Closes the gap where the cursor pagination
  was untested even though the previous PR rewrote it.
- test_threads_router.py: 5 tests for _strip_reserved_metadata
  (owner_id removal, user_id removal, safe-keys passthrough, empty
  input, both-stripped).
- test_auth_type_system.py: replace "password123" fixtures with
  Tr0ub4dor3a / AnotherStr0ngPwd! so the new password blocklist
  doesn't reject the test data.

* docs(auth): refresh TC-DOCKER-05 + document Docker validation gap

- AUTH_TEST_PLAN.md TC-DOCKER-05: the previous expectation
  ("admin password visible in docker logs") was stale after the simplify
  pass that moved credentials to a 0600 file. The grep "Password:" check
  would have silently failed and given a false sense of coverage. New
  expectation matches the actual file-based path: 0600 file in
  DEER_FLOW_HOME, log shows the path (not the secret), reverse-grep
  asserts no leaked password in container logs.
- NEW: docs/AUTH_TEST_DOCKER_GAP.md documents the only un-executed
  block in the test plan (TC-DOCKER-01..06). Reason: sg_dev validation
  host has no Docker daemon installed. The doc maps each Docker case
  to an already-validated bare-metal equivalent (TC-1.1, TC-REENT-01,
  TC-API-02 etc.) so the gap is auditable, and includes pre-flight
  reproduction steps for whoever has Docker available.

---------

Co-authored-by: greatmengqi <chenmengqi.0376@bytedance.com>

* refactor(persistence): unify SQLite to single deerflow.db and move checkpointer to runtime

Merge checkpoints.db and app.db into a single deerflow.db file (WAL mode
handles concurrent access safely). Move checkpointer module from
agents/checkpointer to runtime/checkpointer to better reflect its role
as a runtime infrastructure concern.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(persistence): rename owner_id to user_id and thread_meta_repo to thread_store

Rename owner_id to user_id across all persistence models, repositories,
stores, routers, and tests for clearer semantics. Rename thread_meta_repo
to thread_store for consistency with run_store/run_event_store naming.
Add ThreadMetaStore return type annotation to get_thread_store().

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(persistence): unify ThreadMetaStore interface with user isolation and factory

Add user_id parameter to all ThreadMetaStore abstract methods. Implement
owner isolation in MemoryThreadMetaStore with _get_owned_record helper.
Add check_access to base class and memory implementation. Add
make_thread_store factory to simplify deps.py initialization. Add
memory-backend isolation tests.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(feedback): add UNIQUE(thread_id, run_id, user_id) constraint

Add UNIQUE constraint to FeedbackRow to enforce one feedback per user per run,
enabling upsert behavior in Task 2. Update tests to use distinct user_ids for
multiple feedback records per run, and pass user_id=None to list_by_run for
admin-style queries that bypass user isolation.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(feedback): add upsert() method with UNIQUE enforcement

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(feedback): add delete_by_run() and list_by_thread_grouped()

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(feedback): add PUT upsert and DELETE-by-run endpoints

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(feedback): enrich messages endpoint with per-run feedback data

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(feedback): add frontend feedback API client

Adds upsertFeedback and deleteFeedback API functions backed by
fetchWithAuth, targeting the /api/threads/{id}/runs/{id}/feedback
endpoint.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(feedback): wire feedback data into message rendering for history echo

Adds useThreadFeedback hook that fetches run-level feedback from the
messages API and builds a runId->FeedbackData map. MessageList now calls
this hook and passes feedback and runId to each MessageListItem so
previously-submitted thumbs are pre-filled when revisiting a thread.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(feedback): correct run_id mapping for feedback echo

The feedbackMap was keyed by run_id but looked up by LangGraph message ID.
Fixed by tracking AI message ordinal index to correlate event store
run_ids with LangGraph SDK messages.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(feedback): use real threadId and refresh after stream

- Pass threadId prop to MessageListItem instead of reading "new" from URL params
- Invalidate thread-feedback query on stream finish so buttons appear immediately
- Show feedback buttons always visible, copy button on hover only

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* style(feedback): group copy and feedback buttons together on the left

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* style(feedback): always show toolbar buttons without hover

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(persistence): stream hang when run_events.backend=db

DbRunEventStore._user_id_from_context() returned user.id without
coercing it to str. User.id is a Pydantic UUID, and aiosqlite cannot
bind a raw UUID object to a VARCHAR column, so the INSERT for the
initial human_message event silently rolled back and raised out of
the worker task. Because that put() sat outside the worker's try
block, the finally-clause that publishes end-of-stream never ran
and the SSE stream hung forever.

jsonl mode was unaffected because json.dumps(default=str) coerces
UUID objects transparently.

Fixes:
- db.py: coerce user.id to str at the context-read boundary (matches
  what resolve_user_id already does for the other repositories)
- worker.py: move RunJournal init + human_message put inside the try
  block so any failure flows through the finally/publish_end path
  instead of hanging the subscriber

Defense-in-depth:
- engine.py: add PRAGMA busy_timeout=5000 so checkpointer and event
  store wait for each other on the shared deerflow.db file instead
  of failing immediately under write-lock contention
- journal.py: skip fire-and-forget _flush_sync when a previous flush
  task is still in flight, to avoid piling up concurrent put_batch
  writes on the same SQLAlchemy engine during streaming; flush() now
  waits for pending tasks before draining the buffer
- database_config.py: doc-only update clarifying WAL + busy_timeout
  keep the unified deerflow.db safe for both workloads

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* chore(persistence): drop redundant busy_timeout PRAGMA

Python's sqlite3 driver defaults to a 5-second busy timeout via the
``timeout`` kwarg of ``sqlite3.connect``, and aiosqlite + SQLAlchemy's
aiosqlite dialect inherit that default. Setting ``PRAGMA busy_timeout=5000``
explicitly was a no-op — verified by reading back the PRAGMA on a fresh
connection (it already reports 5000ms without our PRAGMA).

Concurrent stress test (50 checkpoint writes + 20 event batches + 50
thread_meta updates on the same deerflow.db) still completes with zero
errors and 200/200 rows after removing the explicit PRAGMA.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(journal): unwrap Command tool results in on_tool_end

Tools that update graph state (e.g. ``present_files``) return
``Command(update={'messages': [ToolMessage(...)], 'artifacts': [...]})``.
LangGraph later unwraps the inner ``ToolMessage`` into checkpoint state,
but ``RunJournal.on_tool_end`` was receiving the ``Command`` object
directly via the LangChain callback chain and storing
``str(Command(update={...}))`` as the tool_result content.

This produced a visible divergence between the event-store and the
checkpoint for any thread that used a Command-returning tool, blocking
the event-store-backed history fix in the follow-up commit. Concrete
example from thread ``6d30913e-dcd4-41c8-8941-f66c716cf359`` (seq=48):
checkpoint had ``'Successfully presented files'`` while event_store
stored the full Command repr.

The fix detects ``Command`` in ``on_tool_end``, extracts the first
``ToolMessage`` from ``update['messages']``, and lets the existing
ToolMessage branch handle the ``model_dump()`` path. Legacy rows still
containing the Command repr are separately cleaned up by the history
helper in the follow-up commit.

Tests:
- ``test_tool_end_unwraps_command_with_inner_tool_message`` — unit test
  of the unwrap branch with a constructed Command
- ``test_tool_invoke_end_to_end_unwraps_command`` — end-to-end via
  ``CallbackManager`` + ``tool.invoke`` to exercise the real LangChain
  dispatch path that production uses, matching the repro shape from
  ``present_files``
- Counter-proof: temporarily reverted the patch, both tests failed with
  the exact ``Command(update={...})`` repr that was stored in the
  production SQLite row at seq=48, confirming LangChain does pass the
  ``Command`` through callbacks (the unwrap is load-bearing)

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(threads): load history messages from event store, immune to summarize

``get_thread_history`` and ``get_thread_state`` in Gateway mode read
messages from ``checkpoint.channel_values["messages"]``. After
SummarizationMiddleware runs mid-run, that list is rewritten in-place:
pre-summarize messages are dropped and a synthetic summary-as-human
message takes position 0. The frontend then renders a chat history that
starts with ``"Here is a summary of the conversation to date:..."``
instead of the user's original query, and all earlier turns are gone.

The event store (``RunEventStore``) is append-only and never rewritten,
so it retains the full transcript. This commit adds a helper
``_get_event_store_messages`` that loads the event store's message
stream and overrides ``values["messages"]`` in both endpoints; the
checkpoint fallback kicks in only when the event store is unavailable.

Behavior contract of the helper:

- **Full pagination.** ``list_messages`` returns the newest ``limit``
  records when no cursor is given, so a fixed limit silently drops
  older messages on long threads. The helper sizes the read from
  ``count_messages()`` and pages forward with ``after_seq`` cursors.
- **Copy-on-read.** Each content dict is copied before ``id`` is
  patched so the live store object (``MemoryRunEventStore`` returns
  references) is never mutated.
- **Stable ids.** Messages with ``id=None`` (human + tool_result,
  which don't receive an id until checkpoint persistence) get a
  deterministic ``uuid5(NAMESPACE_URL, f"{thread_id}:{seq}")`` so
  React keys stay stable across requests. AI messages keep their
  LLM-assigned ``lc_run--*`` ids.
- **Legacy ``Command`` repr sanitization.** Rows captured before the
  ``journal.py`` ``on_tool_end`` fix (previous commit) stored
  ``str(Command(update={'messages': [ToolMessage(content='X', ...)]}))``
  as the tool_result content. ``_sanitize_legacy_command_repr``
  regex-extracts the inner text so old threads render cleanly.
- **Inline feedback.** When loading the stream, the helper also pulls
  ``feedback_repo.list_by_thread_grouped`` and attaches ``run_id`` to
  every message plus ``feedback`` to the final ``ai_message`` of each
  run. This removes the frontend's need to fetch a second endpoint
  and positional-index-map its way back to the right run. When the
  feedback subsystem is unavailable, the ``feedback`` field is left
  absent entirely so the frontend hides the button rather than
  rendering it over a broken write path.
- **User context.** ``DbRunEventStore`` is user-scoped by default via
  ``resolve_user_id(AUTO)``. The helper relies on the ``@require_permission``
  decorator having populated the user contextvar on both callers; the
  docstring documents this dependency explicitly so nobody wires it
  into a CLI or migration script without passing ``user_id=None``.

Real data verification against thread
``6d30913e-dcd4-41c8-8941-f66c716cf359``: checkpoint showed 12 messages
(summarize-corrupted), event store had 16. The original human message
``"最新伊美局势"`` was preserved as seq=1 in the event store and
correctly restored to position 0 in the helper output. Helper output
for AI messages was byte-identical to checkpoint for every overlapping
message; only tool_result ids differed (patched to uuid5) and the
legacy Command repr at seq=48 was sanitized.

Tests:
- ``test_thread_state_event_store.py`` — 18 tests covering
  ``_sanitize_legacy_command_repr`` (passthrough, single/double-quote
  extraction, unparseable fallback), helper happy path (all message
  types, stable uuid5, store non-mutation), multi-page pagination,
  summarize regression (recovers pre-summarize messages), feedback
  attachment (per-run, multi-run threads, repo failure graceful),
  and dependency failure fallback to ``None``.

Docs:
- ``docs/superpowers/plans/2026-04-10-event-store-history.md`` — the
  implementation plan this commit realizes, with Task 1 revised after
  the evaluation findings (pagination, copy-on-read, Command wrap
  already landed in journal.py, frontend feedback pagination in the
  follow-up commit, Standard-mode follow-up noted).
- ``docs/superpowers/specs/2026-04-11-runjournal-history-evaluation.md``
  — the Claude + second-opinion evaluation document that drove the
  plan revisions (pagination bug, dict-mutation bug, feedback hidden
  bug, Command bug).
- ``docs/superpowers/specs/2026-04-11-summarize-marker-design.md`` —
  design for a follow-up PR that visually marks summarize events in
  history, based on a verified ``adispatch_custom_event`` experiment
  (``trace=False`` middleware nodes can still forward the Pregel task
  config via explicit signature injection).

Scope: Gateway mode only (``make dev-pro``). Standard mode
(``make dev``) hits LangGraph Server directly and bypasses these
endpoints; the summarize symptom is still present there and is
tracked as a separate follow-up in the plan.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(feedback): inline feedback on history and drop positional mapping

The old ``useThreadFeedback`` hook loaded ``GET /api/threads/{id}/messages?limit=200``
and built two parallel lookup tables: ``runIdByAiIndex`` (an ordinal array of
run_ids for every ``ai_message``-typed event) and ``feedbackByRunId``. The render
loop in ``message-list.tsx`` walked the AI messages in order, incrementing
``aiMessageIndex`` on each non-human message, and used that ordinal to look up
the run_id and feedback.

This shape had three latent bugs we could observe on real threads:

1. **Fetch was capped at 200 messages.** Long or tool-heavy threads silently
   dropped earlier entries from the map, so feedback buttons could be missing
   on messages they should own.
2. **Ordinal mismatch.** The render loop counted every non-human message
   (including each intermediate ``ai_tool_call``), but ``runIdByAiIndex`` only
   pushed entries for ``event_type == "ai_message"``. A run with 3 tool_calls
   + 1 final AI message would push 1 entry while the render consumed 4
   positions, so buttons mapped to the wrong positions across multi-run
   threads.
3. **Two parallel data paths.** The ``/history`` render path and the
   ``/messages`` feedback-lookup path could drift in-between an
   ``invalidateQueries`` call and the next refetch, producing transient
   mismaps.

The previous commit moved the authoritative message source for history to
the event store and added ``run_id`` + ``feedback`` inline on each message
dict returned by ``_get_event_store_messages``. This commit aligns the
frontend with that contract:

- **Delete** ``useThreadFeedback``, ``ThreadFeedbackData``,
  ``runIdByAiIndex``, ``feedbackByRunId``, and ``fetchAllThreadMessages``.
- **Introduce** ``useThreadMessageEnrichment`` that fetches
  ``POST /history?limit=1`` once, indexes the returned messages by
  ``message.id`` into a ``Map<id, {run_id, feedback?}>``, and invalidates
  on stream completion (``onFinish`` in ``useThreadStream``). Keying by
  ``message.id`` is stable across runs, tool_call chains, and summarize.
- **Simplify** ``message-list.tsx`` to drop the ``aiMessageIndex``
  counter and read ``enrichment?.get(msg.id)`` at each render step.
- **Rewire** ``message-list-item.tsx`` so the feedback button renders
  when ``feedback !== undefined`` rather than when the message happens
  to be non-human. ``feedback`` is ``undefined`` for non-eligible
  messages (humans, non-final AI, tools), ``null`` for the final
  ai_message of an unrated run, and a ``FeedbackData`` object once
  rated — cleanly distinguishing "not eligible" from "eligible but
  unrated".

``/api/threads/{id}/messages`` is kept as a debug/export surface; no
frontend code calls it anymore but the backend router is untouched.

Validation:
- ``pnpm check`` clean (0 errors, 1 pre-existing unrelated warning)
- Live test on thread ``3d5dea4a`` after gateway restart confirmed the
  original user query is restored to position 0 and the feedback
  button behaves correctly on the final AI message.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(rebase): remove duplicate definitions and update stale module paths

Rebase left duplicate function blocks in worker.py (triple human_message
write causing 3x user messages in /history), deps.py, and prompt.py.
Also update checkpointer imports from the old deerflow.agents.checkpointer
path to deerflow.runtime.checkpointer, and clean up orphaned feedback
props in the frontend message components.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(rebase): restore FeedbackButtons component and enrichment lost during rebase

The FeedbackButtons component (defined inline in message-list-item.tsx)
was introduced in commit 95df8d13 but lost during rebase. The previous
rebase cleanup commit incorrectly removed the feedback/runId props and
enrichment hook as "orphaned code" instead of restoring the missing
component. This commit restores:

- FeedbackButtons component with thumbs up/down toggle and optimistic state
- FeedbackData/upsertFeedback/deleteFeedback imports
- feedback and runId props on MessageListItem
- useThreadMessageEnrichment hook and entry lookup in message-list.tsx

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com>
Co-authored-by: DanielWalnut <45447813+hetaoBackend@users.noreply.github.com>
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
Co-authored-by: JilongSun <965640067@qq.com>
Co-authored-by: jie <49781832+stan-fu@users.noreply.github.com>
Co-authored-by: cooper <cooperfu@tencent.com>
Co-authored-by: yangzheli <43645580+yangzheli@users.noreply.github.com>
Co-authored-by: greatmengqi <chenmengqi.0376@gmail.com>
Co-authored-by: greatmengqi <chenmengqi.0376@bytedance.com>
2026-04-26 11:09:55 +08:00
Copilot
848ace98cb feat: replace auto-admin creation with secure interactive first-boot setup (#2063)
* feat(persistence): add unified persistence layer with event store, token tracking, and feedback (#1930)

* feat(persistence): add SQLAlchemy 2.0 async ORM scaffold

Introduce a unified database configuration (DatabaseConfig) that
controls both the LangGraph checkpointer and the DeerFlow application
persistence layer from a single `database:` config section.

New modules:
- deerflow.config.database_config — Pydantic config with memory/sqlite/postgres backends
- deerflow.persistence — async engine lifecycle, DeclarativeBase with to_dict mixin, Alembic skeleton
- deerflow.runtime.runs.store — RunStore ABC + MemoryRunStore implementation

Gateway integration initializes/tears down the persistence engine in
the existing langgraph_runtime() context manager. Legacy checkpointer
config is preserved for backward compatibility.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(persistence): add RunEventStore ABC + MemoryRunEventStore

Phase 2-A prerequisite for event storage: adds the unified run event
stream interface (RunEventStore) with an in-memory implementation,
RunEventsConfig, gateway integration, and comprehensive tests (27 cases).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(persistence): add ORM models, repositories, DB/JSONL event stores, RunJournal, and API endpoints

Phase 2-B: run persistence + event storage + token tracking.

- ORM models: RunRow (with token fields), ThreadMetaRow, RunEventRow
- RunRepository implements RunStore ABC via SQLAlchemy ORM
- ThreadMetaRepository with owner access control
- DbRunEventStore with trace content truncation and cursor pagination
- JsonlRunEventStore with per-run files and seq recovery from disk
- RunJournal (BaseCallbackHandler) captures LLM/tool/lifecycle events,
  accumulates token usage by caller type, buffers and flushes to store
- RunManager now accepts optional RunStore for persistent backing
- Worker creates RunJournal, writes human_message, injects callbacks
- Gateway deps use factory functions (RunRepository when DB available)
- New endpoints: messages, run messages, run events, token-usage
- ThreadCreateRequest gains assistant_id field
- 92 tests pass (33 new), zero regressions

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(persistence): add user feedback + follow-up run association

Phase 2-C: feedback and follow-up tracking.

- FeedbackRow ORM model (rating +1/-1, optional message_id, comment)
- FeedbackRepository with CRUD, list_by_run/thread, aggregate stats
- Feedback API endpoints: create, list, stats, delete
- follow_up_to_run_id in RunCreateRequest (explicit or auto-detected
  from latest successful run on the thread)
- Worker writes follow_up_to_run_id into human_message event metadata
- Gateway deps: feedback_repo factory + getter
- 17 new tests (14 FeedbackRepository + 3 follow-up association)
- 109 total tests pass, zero regressions

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* test+config: comprehensive Phase 2 test coverage + deprecate checkpointer config

- config.example.yaml: deprecate standalone checkpointer section, activate
  unified database:sqlite as default (drives both checkpointer + app data)
- New: test_thread_meta_repo.py (14 tests) — full ThreadMetaRepository coverage
  including check_access owner logic, list_by_owner pagination
- Extended test_run_repository.py (+4 tests) — completion preserves fields,
  list ordering desc, limit, owner_none returns all
- Extended test_run_journal.py (+8 tests) — on_chain_error, track_tokens=false,
  middleware no ai_message, unknown caller tokens, convenience fields,
  tool_error, non-summarization custom event
- Extended test_run_event_store.py (+7 tests) — DB batch seq continuity,
  make_run_event_store factory (memory/db/jsonl/fallback/unknown)
- Extended test_phase2b_integration.py (+4 tests) — create_or_reject persists,
  follow-up metadata, summarization in history, full DB-backed lifecycle
- Fixed DB integration test to use proper fake objects (not MagicMock)
  for JSON-serializable metadata
- 157 total Phase 2 tests pass, zero regressions

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* config: move default sqlite_dir to .deer-flow/data

Keep SQLite databases alongside other DeerFlow-managed data
(threads, memory) under the .deer-flow/ directory instead of a
top-level ./data folder.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(persistence): remove UTFJSON, use engine-level json_serializer + datetime.now()

- Replace custom UTFJSON type with standard sqlalchemy.JSON in all ORM
  models. Add json_serializer=json.dumps(ensure_ascii=False) to all
  create_async_engine calls so non-ASCII text (Chinese etc.) is stored
  as-is in both SQLite and Postgres.
- Change ORM datetime defaults from datetime.now(UTC) to datetime.now(),
  remove UTC imports.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(gateway): simplify deps.py with getter factory + inline repos

- Replace 6 identical getter functions with _require() factory.
- Inline 3 _make_*_repo() factories into langgraph_runtime(), call
  get_session_factory() once instead of 3 times.
- Add thread_meta upsert in start_run (services.py).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(docker): add UV_EXTRAS build arg for optional dependencies

Support installing optional dependency groups (e.g. postgres) at
Docker build time via UV_EXTRAS build arg:
  UV_EXTRAS=postgres docker compose build

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(journal): fix flush, token tracking, and consolidate tests

RunJournal fixes:
- _flush_sync: retain events in buffer when no event loop instead of
  dropping them; worker's finally block flushes via async flush().
- on_llm_end: add tool_calls filter and caller=="lead_agent" guard for
  ai_message events; mark message IDs for dedup with record_llm_usage.
- worker.py: persist completion data (tokens, message count) to RunStore
  in finally block.

Model factory:
- Auto-inject stream_usage=True for BaseChatOpenAI subclasses with
  custom api_base, so usage_metadata is populated in streaming responses.

Test consolidation:
- Delete test_phase2b_integration.py (redundant with existing tests).
- Move DB-backed lifecycle test into test_run_journal.py.
- Add tests for stream_usage injection in test_model_factory.py.
- Clean up executor/task_tool dead journal references.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(events): widen content type to str|dict in all store backends

Allow event content to be a dict (for structured OpenAI-format messages)
in addition to plain strings. Dict values are JSON-serialized for the DB
backend and deserialized on read; memory and JSONL backends handle dicts
natively. Trace truncation now serializes dicts to JSON before measuring.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(events): use metadata flag instead of heuristic for dict content detection

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(converters): add LangChain-to-OpenAI message format converters

Pure functions langchain_to_openai_message, langchain_to_openai_completion,
langchain_messages_to_openai, and _infer_finish_reason for converting
LangChain BaseMessage objects to OpenAI Chat Completions format, used by
RunJournal for event storage. 15 unit tests added.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(converters): handle empty list content as null, clean up test

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(events): human_message content uses OpenAI user message format

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(events): ai_message uses OpenAI format, add ai_tool_call message event

- ai_message content now uses {"role": "assistant", "content": "..."} format
- New ai_tool_call message event emitted when lead_agent LLM responds with tool_calls
- ai_tool_call uses langchain_to_openai_message converter for consistent format
- Both events include finish_reason in metadata ("stop" or "tool_calls")

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(events): add tool_result message event with OpenAI tool message format

Cache tool_call_id from on_tool_start keyed by run_id as fallback for on_tool_end,
then emit a tool_result message event (role=tool, tool_call_id, content) after each
successful tool completion.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(events): summary content uses OpenAI system message format

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(events): replace llm_start/llm_end with llm_request/llm_response in OpenAI format

Add on_chat_model_start to capture structured prompt messages as llm_request events.
Replace llm_end trace events with llm_response using OpenAI Chat Completions format.
Track llm_call_index to pair request/response events.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(events): add record_middleware method for middleware trace events

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* test(events): add full run sequence integration test for OpenAI content format

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(events): align message events with checkpoint format and add middleware tag injection

- Message events (ai_message, ai_tool_call, tool_result, human_message) now use
  BaseMessage.model_dump() format, matching LangGraph checkpoint values.messages
- on_tool_end extracts tool_call_id/name/status from ToolMessage objects
- on_tool_error now emits tool_result message events with error status
- record_middleware uses middleware:{tag} event_type and middleware category
- Summarization custom events use middleware:summarize category
- TitleMiddleware injects middleware:title tag via get_config() inheritance
- SummarizationMiddleware model bound with middleware:summarize tag
- Worker writes human_message using HumanMessage.model_dump()

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(threads): switch search endpoint to threads_meta table and sync title

- POST /api/threads/search now queries threads_meta table directly,
  removing the two-phase Store + Checkpointer scan approach
- Add ThreadMetaRepository.search() with metadata/status filters
- Add ThreadMetaRepository.update_display_name() for title sync
- Worker syncs checkpoint title to threads_meta.display_name on run completion
- Map display_name to values.title in search response for API compatibility

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(threads): history endpoint reads messages from event store

- POST /api/threads/{thread_id}/history now combines two data sources:
  checkpointer for checkpoint_id, metadata, title, thread_data;
  event store for messages (complete history, not truncated by summarization)
- Strip internal LangGraph metadata keys from response
- Remove full channel_values serialization in favor of selective fields

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix: remove duplicate optional-dependencies header in pyproject.toml

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(middleware): pass tagged config to TitleMiddleware ainvoke call

Without the config, the middleware:title tag was not injected,
causing the LLM response to be recorded as a lead_agent ai_message
in run_events.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix: resolve merge conflict in .env.example

Keep both DATABASE_URL (from persistence-scaffold) and WECOM
credentials (from main) after the merge.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(persistence): address review feedback on PR #1851

- Fix naive datetime.now() → datetime.now(UTC) in all ORM models
- Fix seq race condition in DbRunEventStore.put() with FOR UPDATE
  and UNIQUE(thread_id, seq) constraint
- Encapsulate _store access in RunManager.update_run_completion()
- Deduplicate _store.put() logic in RunManager via _persist_to_store()
- Add update_run_completion to RunStore ABC + MemoryRunStore
- Wire follow_up_to_run_id through the full create path
- Add error recovery to RunJournal._flush_sync() lost-event scenario
- Add migration note for search_threads breaking change
- Fix test_checkpointer_none_fix mock to set database=None

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* chore: update uv.lock

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(persistence): address 22 review comments from CodeQL, Copilot, and Code Quality

Bug fixes:
- Sanitize log params to prevent log injection (CodeQL)
- Reset threads_meta.status to idle/error when run completes
- Attach messages only to latest checkpoint in /history response
- Write threads_meta on POST /threads so new threads appear in search

Lint fixes:
- Remove unused imports (journal.py, migrations/env.py, test_converters.py)
- Convert lambda to named function (engine.py, Ruff E731)
- Remove unused logger definitions in repos (Ruff F841)
- Add logging to JSONL decode errors and empty except blocks
- Separate assert side-effects in tests (CodeQL)
- Remove unused local variables in tests (Ruff F841)
- Fix max_trace_content truncation to use byte length, not char length

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* style: apply ruff format to persistence and runtime files

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* Potential fix for pull request finding 'Statement has no effect'

Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com>

* refactor(runtime): introduce RunContext to reduce run_agent parameter bloat

Extract checkpointer, store, event_store, run_events_config, thread_meta_repo,
and follow_up_to_run_id into a frozen RunContext dataclass. Add get_run_context()
in deps.py to build the base context from app.state singletons. start_run() uses
dataclasses.replace() to enrich per-run fields before passing ctx to run_agent.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(gateway): move sanitize_log_param to app/gateway/utils.py

Extract the log-injection sanitizer from routers/threads.py into a shared
utils module and rename to sanitize_log_param (public API). Eliminates the
reverse service → router import in services.py.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* perf: use SQL aggregation for feedback stats and thread token usage

Replace Python-side counting in FeedbackRepository.aggregate_by_run with
a single SELECT COUNT/SUM query. Add RunStore.aggregate_tokens_by_thread
abstract method with SQL GROUP BY implementation in RunRepository and
Python fallback in MemoryRunStore. Simplify the thread_token_usage
endpoint to delegate to the new method, eliminating the limit=10000
truncation risk.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* docs: annotate DbRunEventStore.put() as low-frequency path

Add docstring clarifying that put() opens a per-call transaction with
FOR UPDATE and should only be used for infrequent writes (currently
just the initial human_message event). High-throughput callers should
use put_batch() instead.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(threads): fall back to Store search when ThreadMetaRepository is unavailable

When database.backend=memory (default) or no SQL session factory is
configured, search_threads now queries the LangGraph Store instead of
returning 503. Returns empty list if neither Store nor repo is available.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(persistence): introduce ThreadMetaStore ABC for backend-agnostic thread metadata

Add ThreadMetaStore abstract base class with create/get/search/update/delete
interface. ThreadMetaRepository (SQL) now inherits from it. New
MemoryThreadMetaStore wraps LangGraph BaseStore for memory-mode deployments.

deps.py now always provides a non-None thread_meta_repo, eliminating all
`if thread_meta_repo is not None` guards in services.py, worker.py, and
routers/threads.py. search_threads no longer needs a Store fallback branch.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(history): read messages from checkpointer instead of RunEventStore

The /history endpoint now reads messages directly from the
checkpointer's channel_values (the authoritative source) instead of
querying RunEventStore.list_messages(). The RunEventStore API is
preserved for other consumers.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(persistence): address new Copilot review comments

- feedback.py: validate thread_id/run_id before deleting feedback
- jsonl.py: add path traversal protection with ID validation
- run_repo.py: parse `before` to datetime for PostgreSQL compat
- thread_meta_repo.py: fix pagination when metadata filter is active
- database_config.py: use resolve_path for sqlite_dir consistency

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* Implement skill self-evolution and skill_manage flow (#1874)

* chore: ignore .worktrees directory

* Add skill_manage self-evolution flow

* Fix CI regressions for skill_manage

* Address PR review feedback for skill evolution

* fix(skill-evolution): preserve history on delete

* fix(skill-evolution): tighten scanner fallbacks

* docs: add skill_manage e2e evidence screenshot

* fix(skill-manage): avoid blocking fs ops in session runtime

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>

* fix(config): resolve sqlite_dir relative to CWD, not Paths.base_dir

resolve_path() resolves relative to Paths.base_dir (.deer-flow),
which double-nested the path to .deer-flow/.deer-flow/data/app.db.
Use Path.resolve() (CWD-relative) instead.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* Feature/feishu receive file (#1608)

* feat(feishu): add channel file materialization hook for inbound messages

- Introduce Channel.receive_file(msg, thread_id) as a base method for file materialization; default is no-op.
- Implement FeishuChannel.receive_file to download files/images from Feishu messages, save to sandbox, and inject virtual paths into msg.text.
- Update ChannelManager to call receive_file for any channel if msg.files is present, enabling downstream model access to user-uploaded files.
- No impact on Slack/Telegram or other channels (they inherit the default no-op).

* style(backend): format code with ruff for lint compliance

- Auto-formatted packages/harness/deerflow/agents/factory.py and tests/test_create_deerflow_agent.py using `ruff format`
- Ensured both files conform to project linting standards
- Fixes CI lint check failures caused by code style issues

* fix(feishu): handle file write operation asynchronously to prevent blocking

* fix(feishu): rename GetMessageResourceRequest to _GetMessageResourceRequest and remove redundant code

* test(feishu): add tests for receive_file method and placeholder replacement

* fix(manager): remove unnecessary type casting for channel retrieval

* fix(feishu): update logging messages to reflect resource handling instead of image

* fix(feishu): sanitize filename by replacing invalid characters in file uploads

* fix(feishu): improve filename sanitization and reorder image key handling in message processing

* fix(feishu): add thread lock to prevent filename conflicts during file downloads

* fix(test): correct bad merge in test_feishu_parser.py

* chore: run ruff and apply formatting cleanup
fix(feishu): preserve rich-text attachment order and improve fallback filename handling

* fix(docker): restore gateway env vars and fix langgraph empty arg issue (#1915)

Two production docker-compose.yaml bugs prevent `make up` from working:

1. Gateway missing DEER_FLOW_CONFIG_PATH and DEER_FLOW_EXTENSIONS_CONFIG_PATH
   environment overrides. Added in fb2d99f (#1836) but accidentally reverted
   by ca2fb95 (#1847). Without them, gateway reads host paths from .env via
   env_file, causing FileNotFoundError inside the container.

2. Langgraph command fails when LANGGRAPH_ALLOW_BLOCKING is unset (default).
   Empty $${allow_blocking} inserts a bare space between flags, causing
   ' --no-reload' to be parsed as unexpected extra argument. Fix by building
   args string first and conditionally appending --allow-blocking.

Co-authored-by: cooper <cooperfu@tencent.com>

* fix(frontend): resolve invalid HTML nesting and tabnabbing vulnerabilities (#1904)

* fix(frontend): resolve invalid HTML nesting and tabnabbing vulnerabilities

Fix `<button>` inside `<a>` invalid HTML in artifact components and add
missing `noopener,noreferrer` to `window.open` calls to prevent reverse
tabnabbing.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix(frontend): address Copilot review on tabnabbing and double-tab-open

Remove redundant parent onClick on web_fetch ChainOfThoughtStep to
prevent opening two tabs on link click, and explicitly null out
window.opener after window.open() for defensive tabnabbing hardening.

---------

Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>

* refactor(persistence): organize entities into per-entity directories

Restructure the persistence layer from horizontal "models/ + repositories/"
split into vertical entity-aligned directories. Each entity (thread_meta,
run, feedback) now owns its ORM model, abstract interface (where applicable),
and concrete implementations under a single directory with an aggregating
__init__.py for one-line imports.

Layout:
  persistence/thread_meta/{base,model,sql,memory}.py
  persistence/run/{model,sql}.py
  persistence/feedback/{model,sql}.py

models/__init__.py is kept as a facade so Alembic autogenerate continues to
discover all ORM tables via Base.metadata. RunEventRow remains under
models/run_event.py because its storage implementation lives in
runtime/events/store/db.py and has no matching repository directory.

The repositories/ directory is removed entirely. All call sites in
gateway/deps.py and tests are updated to import from the new entity
packages, e.g.:

    from deerflow.persistence.thread_meta import ThreadMetaRepository
    from deerflow.persistence.run import RunRepository
    from deerflow.persistence.feedback import FeedbackRepository

Full test suite passes (1690 passed, 14 skipped).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(gateway): sync thread rename and delete through ThreadMetaStore

The POST /threads/{id}/state endpoint previously synced title changes
only to the LangGraph Store via _store_upsert. In sqlite mode the search
endpoint reads from the ThreadMetaRepository SQL table, so renames never
appeared in /threads/search until the next agent run completed (worker.py
syncs title from checkpoint to thread_meta in its finally block).

Likewise the DELETE /threads/{id} endpoint cleaned up the filesystem,
Store, and checkpointer but left the threads_meta row orphaned in sqlite,
so deleted threads kept appearing in /threads/search.

Fix both endpoints by routing through the ThreadMetaStore abstraction
which already has the correct sqlite/memory implementations wired up by
deps.py. The rename path now calls update_display_name() and the delete
path calls delete() — both work uniformly across backends.

Verified end-to-end with curl in gateway mode against sqlite backend.
Existing test suite (1690 passed) and focused router/repo tests pass.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(gateway): route all thread metadata access through ThreadMetaStore

Following the rename/delete bug fix in PR1, migrate the remaining direct
LangGraph Store reads/writes in the threads router and services to the
ThreadMetaStore abstraction so that the sqlite and memory backends behave
identically and the legacy dual-write paths can be removed.

Migrated endpoints (threads.py):
- create_thread: idempotency check + write now use thread_meta_repo.get/create
  instead of dual-writing the LangGraph Store and the SQL row.
- get_thread: reads from thread_meta_repo.get; the checkpoint-only fallback
  for legacy threads is preserved.
- patch_thread: replaced _store_get/_store_put with thread_meta_repo.update_metadata.
- delete_thread_data: dropped the legacy store.adelete; thread_meta_repo.delete
  already covers it.

Removed dead code (services.py):
- _upsert_thread_in_store — redundant with the immediately following
  thread_meta_repo.create() call.
- _sync_thread_title_after_run — worker.py's finally block already syncs
  the title via thread_meta_repo.update_display_name() after each run.

Removed dead code (threads.py):
- _store_get / _store_put / _store_upsert helpers (no remaining callers).
- THREADS_NS constant.
- get_store import (router no longer touches the LangGraph Store directly).

New abstract method:
- ThreadMetaStore.update_metadata(thread_id, metadata) merges metadata into
  the thread's metadata field. Implemented in both ThreadMetaRepository (SQL,
  read-modify-write inside one session) and MemoryThreadMetaStore. Three new
  unit tests cover merge / empty / nonexistent behaviour.

Net change: -134 lines. Full test suite: 1693 passed, 14 skipped.
Verified end-to-end with curl in gateway mode against sqlite backend
(create / patch / get / rename / search / delete).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com>
Co-authored-by: DanielWalnut <45447813+hetaoBackend@users.noreply.github.com>
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
Co-authored-by: JilongSun <965640067@qq.com>
Co-authored-by: jie <49781832+stan-fu@users.noreply.github.com>
Co-authored-by: cooper <cooperfu@tencent.com>
Co-authored-by: yangzheli <43645580+yangzheli@users.noreply.github.com>

* feat(auth): release-validation pass for 2.0-rc — 12 blockers + simplify follow-ups (#2008)

* feat(auth): introduce backend auth module

Port RFC-001 authentication core from PR #1728:
- JWT token handling (create_access_token, decode_token, TokenPayload)
- Password hashing (bcrypt) with verify_password
- SQLite UserRepository with base interface
- Provider Factory pattern (LocalAuthProvider)
- CLI reset_admin tool
- Auth-specific errors (AuthErrorCode, TokenError, AuthErrorResponse)

Deps:
- bcrypt>=4.0.0
- pyjwt>=2.9.0
- email-validator>=2.0.0
- backend/uv.toml pins public PyPI index

Tests: 12 pure unit tests (test_auth_config.py, test_auth_errors.py).

Scope note: authz.py, test_auth.py, and test_auth_type_system.py are
deferred to commit 2 because they depend on middleware and deps wiring
that is not yet in place. Commit 1 stays "pure new files only" as the
spec mandates.

* feat(auth): wire auth end-to-end (middleware + frontend replacement)

Backend:
- Port auth_middleware, csrf_middleware, langgraph_auth, routers/auth
- Port authz decorator (owner_filter_key defaults to 'owner_id')
- Merge app.py: register AuthMiddleware + CSRFMiddleware + CORS, add
  _ensure_admin_user lifespan hook, _migrate_orphaned_threads helper,
  register auth router
- Merge deps.py: add get_local_provider, get_current_user_from_request,
  get_optional_user_from_request; keep get_current_user as thin str|None
  adapter for feedback router
- langgraph.json: add auth path pointing to langgraph_auth.py:auth
- Rename metadata['user_id'] -> metadata['owner_id'] in langgraph_auth
  (both metadata write and LangGraph filter dict) + test fixtures

Frontend:
- Delete better-auth library and api catch-all route
- Remove better-auth npm dependency and env vars (BETTER_AUTH_SECRET,
  BETTER_AUTH_GITHUB_*) from env.js
- Port frontend/src/core/auth/* (AuthProvider, gateway-config,
  proxy-policy, server-side getServerSideUser, types)
- Port frontend/src/core/api/fetcher.ts
- Port (auth)/layout, (auth)/login, (auth)/setup pages
- Rewrite workspace/layout.tsx as server component that calls
  getServerSideUser and wraps in AuthProvider
- Port workspace/workspace-content.tsx for the client-side sidebar logic

Tests:
- Port 5 auth test files (test_auth, test_auth_middleware,
  test_auth_type_system, test_ensure_admin, test_langgraph_auth)
- 176 auth tests PASS

After this commit: login/logout/registration flow works, but persistence
layer does not yet filter by owner_id. Commit 4 closes that gap.

* feat(auth): account settings page + i18n

- Port account-settings-page.tsx (change password, change email, logout)
- Wire into settings-dialog.tsx as new "account" section with UserIcon,
  rendered first in the section list
- Add i18n keys:
  - en-US/zh-CN: settings.sections.account ("Account" / "账号")
  - en-US/zh-CN: button.logout ("Log out" / "退出登录")
  - types.ts: matching type declarations

* feat(auth): enforce owner_id across 2.0-rc persistence layer

Add request-scoped contextvar-based owner filtering to threads_meta,
runs, run_events, and feedback repositories. Router code is unchanged
— isolation is enforced at the storage layer so that any caller that
forgets to pass owner_id still gets filtered results, and new routes
cannot accidentally leak data.

Core infrastructure
-------------------
- deerflow/runtime/user_context.py (new):
  - ContextVar[CurrentUser | None] with default None
  - runtime_checkable CurrentUser Protocol (structural subtype with .id)
  - set/reset/get/require helpers
  - AUTO sentinel + resolve_owner_id(value, method_name) for sentinel
    three-state resolution: AUTO reads contextvar, explicit str
    overrides, explicit None bypasses the filter (for migration/CLI)

Repository changes
------------------
- ThreadMetaRepository: create/get/search/update_*/delete gain
  owner_id=AUTO kwarg; read paths filter by owner, writes stamp it,
  mutations check ownership before applying
- RunRepository: put/get/list_by_thread/delete gain owner_id=AUTO kwarg
- FeedbackRepository: create/get/list_by_run/list_by_thread/delete
  gain owner_id=AUTO kwarg
- DbRunEventStore: list_messages/list_events/list_messages_by_run/
  count_messages/delete_by_thread/delete_by_run gain owner_id=AUTO
  kwarg. Write paths (put/put_batch) read contextvar softly: when a
  request-scoped user is available, owner_id is stamped; background
  worker writes without a user context pass None which is valid
  (orphan row to be bound by migration)

Schema
------
- persistence/models/run_event.py: RunEventRow.owner_id = Mapped[
  str | None] = mapped_column(String(64), nullable=True, index=True)
- No alembic migration needed: 2.0 ships fresh, Base.metadata.create_all
  picks up the new column automatically

Middleware
----------
- auth_middleware.py: after cookie check, call get_optional_user_from_
  request to load the real User, stamp it into request.state.user AND
  the contextvar via set_current_user, reset in a try/finally. Public
  paths and unauthenticated requests continue without contextvar, and
  @require_auth handles the strict 401 path

Test infrastructure
-------------------
- tests/conftest.py: @pytest.fixture(autouse=True) _auto_user_context
  sets a default SimpleNamespace(id="test-user-autouse") on every test
  unless marked @pytest.mark.no_auto_user. Keeps existing 20+
  persistence tests passing without modification
- pyproject.toml [tool.pytest.ini_options]: register no_auto_user
  marker so pytest does not emit warnings for opt-out tests
- tests/test_user_context.py: 6 tests covering three-state semantics,
  Protocol duck typing, and require/optional APIs
- tests/test_thread_meta_repo.py: one test updated to pass owner_id=
  None explicitly where it was previously relying on the old default

Test results
------------
- test_user_context.py: 6 passed
- test_auth*.py + test_langgraph_auth.py + test_ensure_admin.py: 127
- test_run_event_store / test_run_repository / test_thread_meta_repo
  / test_feedback: 92 passed
- Full backend suite: 1905 passed, 2 failed (both @requires_llm flaky
  integration tests unrelated to auth), 1 skipped

* feat(auth): extend orphan migration to 2.0-rc persistence tables

_ensure_admin_user now runs a three-step pipeline on every boot:

  Step 1 (fatal):     admin user exists / is created / password is reset
  Step 2 (non-fatal): LangGraph store orphan threads → admin
  Step 3 (non-fatal): SQL persistence tables → admin
    - threads_meta
    - runs
    - run_events
    - feedback

Each step is idempotent. The fatal/non-fatal split mirrors PR #1728's
original philosophy: admin creation failure blocks startup (the system
is unusable without an admin), whereas migration failures log a warning
and let the service proceed (a partial migration is recoverable; a
missing admin is not).

Key helpers
-----------
- _iter_store_items(store, namespace, *, page_size=500):
  async generator that cursor-paginates across LangGraph store pages.
  Fixes PR #1728's hardcoded limit=1000 bug that would silently lose
  orphans beyond the first page.

- _migrate_orphaned_threads(store, admin_user_id):
  Rewritten to use _iter_store_items. Returns the migrated count so the
  caller can log it; raises only on unhandled exceptions.

- _migrate_orphan_sql_tables(admin_user_id):
  Imports the 4 ORM models lazily, grabs the shared session factory,
  runs one UPDATE per table in a single transaction, commits once.
  No-op when no persistence backend is configured (in-memory dev).

Tests: test_ensure_admin.py (8 passed)

* test(auth): port AUTH test plan docs + lint/format pass

- Port backend/docs/AUTH_TEST_PLAN.md and AUTH_UPGRADE.md from PR #1728
- Rename metadata.user_id → metadata.owner_id in AUTH_TEST_PLAN.md
  (4 occurrences from the original PR doc)
- ruff auto-fix UP037 in sentinel type annotations: drop quotes around
  "str | None | _AutoSentinel" now that from __future__ import
  annotations makes them implicit string forms
- ruff format: 2 files (app/gateway/app.py, runtime/user_context.py)

Note on test coverage additions:
- conftest.py autouse fixture was already added in commit 4 (had to
  be co-located with the repository changes to keep pre-existing
  persistence tests passing)
- cross-user isolation E2E tests (test_owner_isolation.py) deferred
  — enforcement is already proven by the 98-test repository suite
  via the autouse fixture + explicit _AUTO sentinel exercises
- New test cases (TC-API-17..20, TC-ATK-13, TC-MIG-01..07) listed
  in AUTH_TEST_PLAN.md are deferred to a follow-up PR — they are
  manual-QA test cases rather than pytest code, and the spec-level
  coverage is already met by test_user_context.py + the 98-test
  repository suite.

Final test results:
- Auth suite (test_auth*, test_langgraph_auth, test_ensure_admin,
  test_user_context): 186 passed
- Persistence suite (test_run_event_store, test_run_repository,
  test_thread_meta_repo, test_feedback): 98 passed
- Lint: ruff check + ruff format both clean

* test(auth): add cross-user isolation test suite

10 tests exercising the storage-layer owner filter by manually
switching the user_context contextvar between two users. Verifies
the safety invariant:

  After a repository write with owner_id=A, a subsequent read with
  owner_id=B must not return the row, and vice versa.

Covers all 4 tables that own user-scoped data:

TC-API-17  threads_meta  — read, search, update, delete cross-user
TC-API-18  runs          — get, list_by_thread, delete cross-user
TC-API-19  run_events    — list_messages, list_events, count_messages,
                           delete_by_thread (CRITICAL: raw conversation
                           content leak vector)
TC-API-20  feedback      — get, list_by_run, delete cross-user

Plus two meta-tests verifying the sentinel pattern itself:
- AUTO + unset contextvar raises RuntimeError
- explicit owner_id=None bypasses the filter (migration escape hatch)

Architecture note
-----------------
These tests bypass the HTTP layer by design. The full chain
(cookie → middleware → contextvar → repository) is covered piecewise:

- test_auth_middleware.py: middleware sets contextvar from cookies
- test_owner_isolation.py: repositories enforce isolation when
  contextvar is set to different users

Together they prove the end-to-end safety property without the
ceremony of spinning up a full TestClient + in-memory DB for every
router endpoint.

Tests pass: 231 (full auth + persistence + isolation suite)
Lint: clean

* refactor(auth): migrate user repository to SQLAlchemy ORM

Move the users table into the shared persistence engine so auth
matches the pattern of threads_meta, runs, run_events, and feedback —
one engine, one session factory, one schema init codepath.

New files
---------
- persistence/user/__init__.py, persistence/user/model.py: UserRow
  ORM class with partial unique index on (oauth_provider, oauth_id)
- Registered in persistence/models/__init__.py so
  Base.metadata.create_all() picks it up

Modified
--------
- auth/repositories/sqlite.py: rewritten as async SQLAlchemy,
  identical constructor pattern to the other four repositories
  (def __init__(self, session_factory) + self._sf = session_factory)
- auth/config.py: drop users_db_path field — storage is configured
  through config.database like every other table
- deps.py/get_local_provider: construct SQLiteUserRepository with
  the shared session factory, fail fast if engine is not initialised
- tests/test_auth.py: rewrite test_sqlite_round_trip_new_fields to
  use the shared engine (init_engine + close_engine in a tempdir)
- tests/test_auth_type_system.py: add per-test autouse fixture that
  spins up a scratch engine and resets deps._cached_* singletons

* refactor(auth): remove SQL orphan migration (unused in supported scenarios)

The _migrate_orphan_sql_tables helper existed to bind NULL owner_id
rows in threads_meta, runs, run_events, and feedback to the admin on
first boot. But in every supported upgrade path, it's a no-op:

  1. Fresh install: create_all builds fresh tables, no legacy rows
  2. No-auth → with-auth (no existing persistence DB): persistence
     tables are created fresh by create_all, no legacy rows
  3. No-auth → with-auth (has existing persistence DB from #1930):
     NOT a supported upgrade path — "有 DB 到有 DB" schema evolution
     is out of scope; users wipe DB or run manual ALTER

So the SQL orphan migration never has anything to do in the
supported matrix. Delete the function, simplify _ensure_admin_user
from a 3-step pipeline to a 2-step one (admin creation + LangGraph
store orphan migration only).

LangGraph store orphan migration stays: it serves the real
"no-auth → with-auth" upgrade path where a user's existing LangGraph
thread metadata has no owner_id field and needs to be stamped with
the newly-created admin's id.

Tests: 284 passed (auth + persistence + isolation)
Lint: clean

* security(auth): write initial admin password to 0600 file instead of logs

CodeQL py/clear-text-logging-sensitive-data flagged 3 call sites that
logged the auto-generated admin password to stdout via logger.info().
Production log aggregators (ELK/Splunk/etc) would have captured those
cleartext secrets. Replace with a shared helper that writes to
.deer-flow/admin_initial_credentials.txt with mode 0600, and log only
the path.

New file
--------
- app/gateway/auth/credential_file.py: write_initial_credentials()
  helper. Takes email, password, and a "initial"/"reset" label.
  Creates .deer-flow/ if missing, writes a header comment plus the
  email+password, chmods 0o600, returns the absolute Path.

Modified
--------
- app/gateway/app.py: both _ensure_admin_user paths (fresh creation
  + needs_setup password reset) now write to file and log the path
- app/gateway/auth/reset_admin.py: rewritten to use the shared ORM
  repo (SQLiteUserRepository with session_factory) and the
  credential_file helper. The previous implementation was broken
  after the earlier ORM refactor — it still imported _get_users_conn
  and constructed SQLiteUserRepository() without a session factory.

No tests changed — the three password-log sites are all exercised
via existing test_ensure_admin.py which checks that startup
succeeds, not that a specific string appears in logs.

CodeQL alerts 272, 283, 284: all resolved.

* security(auth): strict JWT validation in middleware (fix junk cookie bypass)

AUTH_TEST_PLAN test 7.5.8 expects junk cookies to be rejected with
401. The previous middleware behaviour was "presence-only": check
that some access_token cookie exists, then pass through. In
combination with my Task-12 decision to skip @require_auth
decorators on routes, this created a gap where a request with any
cookie-shaped string (e.g. access_token=not-a-jwt) would bypass
authentication on routes that do not touch the repository
(/api/models, /api/mcp/config, /api/memory, /api/skills, …).

Fix: middleware now calls get_current_user_from_request() strictly
and catches the resulting HTTPException to render a 401 with the
proper fine-grained error code (token_invalid, token_expired,
user_not_found, …). On success it stamps request.state.user and
the contextvar so repository-layer owner filters work downstream.

The 4 old "_with_cookie_passes" tests in test_auth_middleware.py
were written for the presence-only behaviour; they asserted that
a junk cookie would make the handler return 200. They are renamed
to "_with_junk_cookie_rejected" and their assertions flipped to
401. The negative path (no cookie → 401 not_authenticated)
is unchanged.

Verified:
  no cookie       → 401 not_authenticated
  junk cookie     → 401 token_invalid     (the fixed bug)
  expired cookie  → 401 token_expired

Tests: 284 passed (auth + persistence + isolation)
Lint: clean

* security(auth): wire @require_permission(owner_check=True) on isolation routes

Apply the require_permission decorator to all 28 routes that take a
{thread_id} path parameter. Combined with the strict middleware
(previous commit), this gives the double-layer protection that
AUTH_TEST_PLAN test 7.5.9 documents:

  Layer 1 (AuthMiddleware): cookie + JWT validation, rejects junk
                            cookies and stamps request.state.user
  Layer 2 (@require_permission with owner_check=True): per-resource
                            ownership verification via
                            ThreadMetaStore.check_access — returns
                            404 if a different user owns the thread

The decorator's owner_check branch is rewritten to use the SQL
thread_meta_repo (the 2.0-rc persistence layer) instead of the
LangGraph store path that PR #1728 used (_store_get / get_store
in routers/threads.py). The inject_record convenience is dropped
— no caller in 2.0 needs the LangGraph blob, and the SQL repo has
a different shape.

Routes decorated (28 total):
- threads.py: delete, patch, get, get-state, post-state, post-history
- thread_runs.py: post-runs, post-runs-stream, post-runs-wait,
  list_runs, get_run, cancel_run, join_run, stream_existing_run,
  list_thread_messages, list_run_messages, list_run_events,
  thread_token_usage
- feedback.py: create, list, stats, delete
- uploads.py: upload (added Request param), list, delete
- artifacts.py: get_artifact
- suggestions.py: generate (renamed body parameter to avoid
  conflict with FastAPI Request)

Test fixes:
- test_suggestions_router.py: bypass the decorator via __wrapped__
  (the unit tests cover parsing logic, not auth — no point spinning
  up a thread_meta_repo just to test JSON unwrapping)
- test_auth_middleware.py 4 fake-cookie tests: already updated in
  the previous commit (745bf432)

Tests: 293 passed (auth + persistence + isolation + suggestions)
Lint: clean

* security(auth): defense-in-depth fixes from release validation pass

Eight findings caught while running the AUTH_TEST_PLAN end-to-end against
the deployed sg_dev stack. Each is a pre-condition for shipping
release/2.0-rc that the previous PRs missed.

Backend hardening
- routers/auth.py: rate limiter X-Real-IP now requires AUTH_TRUSTED_PROXIES
  whitelist (CIDR/IP allowlist). Without nginx in front, the previous code
  honored arbitrary X-Real-IP, letting an attacker rotate the header to
  fully bypass the per-IP login lockout.
- routers/auth.py: 36-entry common-password blocklist via Pydantic
  field_validator on RegisterRequest + ChangePasswordRequest. The shared
  _validate_strong_password helper keeps the constraint in one place.
- routers/threads.py: ThreadCreateRequest + ThreadPatchRequest strip
  server-reserved metadata keys (owner_id, user_id) via Pydantic
  field_validator so a forged value can never round-trip back to other
  clients reading the same thread. The actual ownership invariant stays
  on the threads_meta row; this closes the metadata-blob echo gap.
- authz.py + thread_meta/sql.py: require_permission gains a require_existing
  flag plumbed through check_access(require_existing=True). Destructive
  routes (DELETE/PATCH/state-update/runs/feedback) now treat a missing
  thread_meta row as 404 instead of "untracked legacy thread, allow",
  closing the cross-user delete-idempotence gap where any user could
  successfully DELETE another user's deleted thread.
- repositories/sqlite.py + base.py: update_user raises UserNotFoundError
  on a vanished row instead of silently returning the input. Concurrent
  delete during password reset can no longer look like a successful update.
- runtime/user_context.py: resolve_owner_id() coerces User.id (UUID) to
  str at the contextvar boundary so SQLAlchemy String(64) columns can
  bind it. The whole 2.0-rc isolation pipeline was previously broken
  end-to-end (POST /api/threads → 500 "type 'UUID' is not supported").
- persistence/engine.py: SQLAlchemy listener enables PRAGMA journal_mode=WAL,
  synchronous=NORMAL, foreign_keys=ON on every new SQLite connection.
  TC-UPG-06 in the test plan expects WAL; previous code shipped with the
  default 'delete' journal.
- auth_middleware.py: stamp request.state.auth = AuthContext(...) so
  @require_permission's short-circuit fires; previously every isolation
  request did a duplicate JWT decode + users SELECT. Also unifies the
  401 payload through AuthErrorResponse(...).model_dump().
- app.py: _ensure_admin_user restructure removes the noqa F821 scoping
  bug where 'password' was referenced outside the branch that defined it.
  New _announce_credentials helper absorbs the duplicate log block in
  the fresh-admin and reset-admin branches.

* fix(frontend+nginx): rollout CSRF on every state-changing client path

The frontend was 100% broken in gateway-pro mode for any user trying to
open a specific chat thread. Three cumulative bugs each silently
masked the next.

LangGraph SDK CSRF gap (api-client.ts)
- The Client constructor took only apiUrl, no defaultHeaders, no fetch
  interceptor. The SDK's internal fetch never sent X-CSRF-Token, so
  every state-changing /api/langgraph-compat/* call (runs/stream,
  threads/search, threads/{tid}/history, ...) hit CSRFMiddleware and
  got 403 before reaching the auth check. UI symptom: empty thread page
  with no error message; the SPA's hooks swallowed the rejection.
- Fix: pass an onRequest hook that injects X-CSRF-Token from the
  csrf_token cookie per request. Reading the cookie per call (not at
  construction time) handles login / logout / password-change cookie
  rotation transparently. The SDK's prepareFetchOptions calls
  onRequest for both regular requests AND streaming/SSE/reconnect, so
  the same hook covers runs.stream and runs.joinStream.

Raw fetch CSRF gap (7 files)
- Audit: 11 frontend fetch sites, only 2 included CSRF (login/setup +
  account-settings change-password). The other 7 routed through raw
  fetch() with no header — suggestions, memory, agents, mcp, skills,
  uploads, and the local thread cleanup hook all 403'd silently.
- Fix: enhance fetcher.ts:fetchWithAuth to auto-inject X-CSRF-Token on
  POST/PUT/DELETE/PATCH from a single shared readCsrfCookie() helper.
  Convert all 7 raw fetch() callers to fetchWithAuth so the contract
  is centrally enforced. api-client.ts and fetcher.ts share
  readCsrfCookie + STATE_CHANGING_METHODS to avoid drift.

nginx routing + buffering (nginx.local.conf)
- The auth feature shipped without updating the nginx config: per-API
  explicit location blocks but no /api/v1/auth/, /api/feedback, /api/runs.
  The frontend's client-side fetches to /api/v1/auth/login/local 404'd
  from the Next.js side because nginx routed /api/* to the frontend.
- Fix: add catch-all `location /api/` that proxies to the gateway.
  nginx longest-prefix matching keeps the explicit blocks (/api/models,
  /api/threads regex, /api/langgraph/, ...) winning for their paths.
- Fix: disable proxy_buffering + proxy_request_buffering for the
  frontend `location /` block. Without it, nginx tries to spool large
  Next.js chunks into /var/lib/nginx/proxy (root-owned) and fails with
  Permission denied → ERR_INCOMPLETE_CHUNKED_ENCODING → ChunkLoadError.

* test(auth): release-validation test infra and new coverage

Test fixtures and unit tests added during the validation pass.

Router test helpers (NEW: tests/_router_auth_helpers.py)
- make_authed_test_app(): builds a FastAPI test app with a stub
  middleware that stamps request.state.user + request.state.auth and a
  permissive thread_meta_repo mock. TestClient-based router tests
  (test_artifacts_router, test_threads_router) use it instead of bare
  FastAPI() so the new @require_permission(owner_check=True) decorators
  short-circuit cleanly.
- call_unwrapped(): walks the __wrapped__ chain to invoke the underlying
  handler without going through the authz wrappers. Direct-call tests
  (test_uploads_router) use it. Typed with ParamSpec so the wrapped
  signature flows through.

Backend test additions
- test_auth.py: 7 tests for the new _get_client_ip trust model (no
  proxy / trusted proxy / untrusted peer / XFF rejection / invalid
  CIDR / no client). 5 tests for the password blocklist (literal,
  case-insensitive, strong password accepted, change-password binding,
  short-password length-check still fires before blocklist).
  test_update_user_raises_when_row_concurrently_deleted: closes a
  shipped-without-coverage gap on the new UserNotFoundError contract.
- test_thread_meta_repo.py: 4 tests for check_access(require_existing=True)
  — strict missing-row denial, strict owner match, strict owner mismatch,
  strict null-owner still allowed (shared rows survive the tightening).
- test_ensure_admin.py: 3 tests for _migrate_orphaned_threads /
  _iter_store_items pagination, covering the TC-UPG-02 upgrade story
  end-to-end via mock store. Closes the gap where the cursor pagination
  was untested even though the previous PR rewrote it.
- test_threads_router.py: 5 tests for _strip_reserved_metadata
  (owner_id removal, user_id removal, safe-keys passthrough, empty
  input, both-stripped).
- test_auth_type_system.py: replace "password123" fixtures with
  Tr0ub4dor3a / AnotherStr0ngPwd! so the new password blocklist
  doesn't reject the test data.

* docs(auth): refresh TC-DOCKER-05 + document Docker validation gap

- AUTH_TEST_PLAN.md TC-DOCKER-05: the previous expectation
  ("admin password visible in docker logs") was stale after the simplify
  pass that moved credentials to a 0600 file. The grep "Password:" check
  would have silently failed and given a false sense of coverage. New
  expectation matches the actual file-based path: 0600 file in
  DEER_FLOW_HOME, log shows the path (not the secret), reverse-grep
  asserts no leaked password in container logs.
- NEW: docs/AUTH_TEST_DOCKER_GAP.md documents the only un-executed
  block in the test plan (TC-DOCKER-01..06). Reason: sg_dev validation
  host has no Docker daemon installed. The doc maps each Docker case
  to an already-validated bare-metal equivalent (TC-1.1, TC-REENT-01,
  TC-API-02 etc.) so the gap is auditable, and includes pre-flight
  reproduction steps for whoever has Docker available.

---------

Co-authored-by: greatmengqi <chenmengqi.0376@bytedance.com>

* feat: replace auto-admin creation with interactive setup flow

On first boot, instead of auto-creating admin@deerflow.dev with a
random password written to a credential file, DeerFlow now redirects
to /setup where the user creates the admin account interactively.

Backend:
- Remove auto admin creation from _ensure_admin_user (now only runs
  orphan thread migration when an admin already exists)
- Add POST /api/v1/auth/initialize endpoint (public, only callable
  when 0 users exist; auto-logs in after creation)
- Add /api/v1/auth/initialize to public paths in auth_middleware.py
  and CSRF exempt paths in csrf_middleware.py
- Update test_ensure_admin.py to match new behavior
- Add test_initialize_admin.py with 8 tests for the new endpoint

Frontend:
- Add system_setup_required to AuthResult type
- getServerSideUser() checks setup-status when unauthenticated
- Auth layout allows system_setup_required (renders children)
- Workspace layout redirects system_setup_required → /setup
- Login page redirects to /setup when system not initialized
- Setup page detects mode via isAuthenticated: unauth = create-admin
  form (calls /initialize), auth = change-password form (existing)

Agent-Logs-Url: https://github.com/bytedance/deer-flow/sessions/9c2471c5-d6e9-4ada-9192-61b56007b8d7

Co-authored-by: foreleven <4785594+foreleven@users.noreply.github.com>

* fix: add cleanup flags to useEffect async fetches in setup/login pages

Agent-Logs-Url: https://github.com/bytedance/deer-flow/sessions/9c2471c5-d6e9-4ada-9192-61b56007b8d7

Co-authored-by: foreleven <4785594+foreleven@users.noreply.github.com>

* fix: address reviewer feedback on /initialize endpoint security and robustness

1. Concurrency/register-blocking: switch setup-status and /initialize to
   check admin_count (via new count_admin_users()) instead of total
   user_count — /register can no longer block admin initialization

2. Dedicated error code: add SYSTEM_ALREADY_INITIALIZED to AuthErrorCode
   and use it in /initialize 409 responses; add to frontend types

3. Init token security: generate a one-time token at startup (logged to
   stdout) and require it in the /initialize request body — prevents
   an attacker from claiming admin on an exposed first-boot instance

4. Setup-status fetch timeout: apply SSR_AUTH_TIMEOUT_MS abort-controller
   pattern to the setup-status fetch in server.ts (same as /auth/me)

Backend repo/provider: add count_admin_users() to base, SQLite, and
LocalAuthProvider. Tests updated + new token-validation/register-blocking
test cases added.

Agent-Logs-Url: https://github.com/bytedance/deer-flow/sessions/b9f531fc-8ed3-41db-b416-237f243b45fd

Co-authored-by: foreleven <4785594+foreleven@users.noreply.github.com>

* fix: address code review nits — move secrets import, add INVALID_INIT_TOKEN error code, fix test assertions

Agent-Logs-Url: https://github.com/bytedance/deer-flow/sessions/b9f531fc-8ed3-41db-b416-237f243b45fd

Co-authored-by: foreleven <4785594+foreleven@users.noreply.github.com>

* refactor: remove init_token generation and validation from admin setup flow

* fix: re-apply init_token security for /initialize endpoint

Re-adds the one-time init_token requirement to the /initialize endpoint,
building on the human's UI improvements in 5eeeb09. This addresses the
two remaining unresolved review threads:

1. Dedicated error code (SYSTEM_ALREADY_INITIALIZED + INVALID_INIT_TOKEN)
2. Init token security gate — requires the token logged at startup

Changes:
- errors.py: re-add INVALID_INIT_TOKEN error code
- routers/auth.py: re-add `import secrets`, `init_token` field,
  token validation with secrets.compare_digest, and token consumption
- app.py: re-add token generation/logging and app.state.init_token = None
- setup/page.tsx: re-add initToken state + input field (human's UI kept)
- types.ts: re-add invalid_init_token error code
- test_initialize_admin.py: restore full token test coverage
- test_ensure_admin.py: restore init_token assertions

Agent-Logs-Url: https://github.com/bytedance/deer-flow/sessions/646fb5c0-ec09-41aa-9fe9-e6f7c32364e8

Co-authored-by: foreleven <4785594+foreleven@users.noreply.github.com>

* fix: make init_token optional (403 not 422 on missing), don't consume token on error paths

Agent-Logs-Url: https://github.com/bytedance/deer-flow/sessions/646fb5c0-ec09-41aa-9fe9-e6f7c32364e8

Co-authored-by: foreleven <4785594+foreleven@users.noreply.github.com>

* refactor: remove redundant skill-related functions and documentation

---------

Co-authored-by: rayhpeng <rayhpeng@gmail.com>
Co-authored-by: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com>
Co-authored-by: DanielWalnut <45447813+hetaoBackend@users.noreply.github.com>
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
Co-authored-by: JilongSun <965640067@qq.com>
Co-authored-by: jie <49781832+stan-fu@users.noreply.github.com>
Co-authored-by: cooper <cooperfu@tencent.com>
Co-authored-by: yangzheli <43645580+yangzheli@users.noreply.github.com>
Co-authored-by: greatmengqi <chenmengqi.0376@gmail.com>
Co-authored-by: greatmengqi <chenmengqi.0376@bytedance.com>
Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com>
Co-authored-by: foreleven <4785594+foreleven@users.noreply.github.com>
Co-authored-by: jiangfeng.11 <jiangfeng.11@bytedance.com>
2026-04-26 11:08:41 +08:00
greatmengqi
94eee95fe0 feat(auth): release-validation pass for 2.0-rc — 12 blockers + simplify follow-ups (#2008)
* feat(auth): introduce backend auth module

Port RFC-001 authentication core from PR #1728:
- JWT token handling (create_access_token, decode_token, TokenPayload)
- Password hashing (bcrypt) with verify_password
- SQLite UserRepository with base interface
- Provider Factory pattern (LocalAuthProvider)
- CLI reset_admin tool
- Auth-specific errors (AuthErrorCode, TokenError, AuthErrorResponse)

Deps:
- bcrypt>=4.0.0
- pyjwt>=2.9.0
- email-validator>=2.0.0
- backend/uv.toml pins public PyPI index

Tests: 12 pure unit tests (test_auth_config.py, test_auth_errors.py).

Scope note: authz.py, test_auth.py, and test_auth_type_system.py are
deferred to commit 2 because they depend on middleware and deps wiring
that is not yet in place. Commit 1 stays "pure new files only" as the
spec mandates.

* feat(auth): wire auth end-to-end (middleware + frontend replacement)

Backend:
- Port auth_middleware, csrf_middleware, langgraph_auth, routers/auth
- Port authz decorator (owner_filter_key defaults to 'owner_id')
- Merge app.py: register AuthMiddleware + CSRFMiddleware + CORS, add
  _ensure_admin_user lifespan hook, _migrate_orphaned_threads helper,
  register auth router
- Merge deps.py: add get_local_provider, get_current_user_from_request,
  get_optional_user_from_request; keep get_current_user as thin str|None
  adapter for feedback router
- langgraph.json: add auth path pointing to langgraph_auth.py:auth
- Rename metadata['user_id'] -> metadata['owner_id'] in langgraph_auth
  (both metadata write and LangGraph filter dict) + test fixtures

Frontend:
- Delete better-auth library and api catch-all route
- Remove better-auth npm dependency and env vars (BETTER_AUTH_SECRET,
  BETTER_AUTH_GITHUB_*) from env.js
- Port frontend/src/core/auth/* (AuthProvider, gateway-config,
  proxy-policy, server-side getServerSideUser, types)
- Port frontend/src/core/api/fetcher.ts
- Port (auth)/layout, (auth)/login, (auth)/setup pages
- Rewrite workspace/layout.tsx as server component that calls
  getServerSideUser and wraps in AuthProvider
- Port workspace/workspace-content.tsx for the client-side sidebar logic

Tests:
- Port 5 auth test files (test_auth, test_auth_middleware,
  test_auth_type_system, test_ensure_admin, test_langgraph_auth)
- 176 auth tests PASS

After this commit: login/logout/registration flow works, but persistence
layer does not yet filter by owner_id. Commit 4 closes that gap.

* feat(auth): account settings page + i18n

- Port account-settings-page.tsx (change password, change email, logout)
- Wire into settings-dialog.tsx as new "account" section with UserIcon,
  rendered first in the section list
- Add i18n keys:
  - en-US/zh-CN: settings.sections.account ("Account" / "账号")
  - en-US/zh-CN: button.logout ("Log out" / "退出登录")
  - types.ts: matching type declarations

* feat(auth): enforce owner_id across 2.0-rc persistence layer

Add request-scoped contextvar-based owner filtering to threads_meta,
runs, run_events, and feedback repositories. Router code is unchanged
— isolation is enforced at the storage layer so that any caller that
forgets to pass owner_id still gets filtered results, and new routes
cannot accidentally leak data.

Core infrastructure
-------------------
- deerflow/runtime/user_context.py (new):
  - ContextVar[CurrentUser | None] with default None
  - runtime_checkable CurrentUser Protocol (structural subtype with .id)
  - set/reset/get/require helpers
  - AUTO sentinel + resolve_owner_id(value, method_name) for sentinel
    three-state resolution: AUTO reads contextvar, explicit str
    overrides, explicit None bypasses the filter (for migration/CLI)

Repository changes
------------------
- ThreadMetaRepository: create/get/search/update_*/delete gain
  owner_id=AUTO kwarg; read paths filter by owner, writes stamp it,
  mutations check ownership before applying
- RunRepository: put/get/list_by_thread/delete gain owner_id=AUTO kwarg
- FeedbackRepository: create/get/list_by_run/list_by_thread/delete
  gain owner_id=AUTO kwarg
- DbRunEventStore: list_messages/list_events/list_messages_by_run/
  count_messages/delete_by_thread/delete_by_run gain owner_id=AUTO
  kwarg. Write paths (put/put_batch) read contextvar softly: when a
  request-scoped user is available, owner_id is stamped; background
  worker writes without a user context pass None which is valid
  (orphan row to be bound by migration)

Schema
------
- persistence/models/run_event.py: RunEventRow.owner_id = Mapped[
  str | None] = mapped_column(String(64), nullable=True, index=True)
- No alembic migration needed: 2.0 ships fresh, Base.metadata.create_all
  picks up the new column automatically

Middleware
----------
- auth_middleware.py: after cookie check, call get_optional_user_from_
  request to load the real User, stamp it into request.state.user AND
  the contextvar via set_current_user, reset in a try/finally. Public
  paths and unauthenticated requests continue without contextvar, and
  @require_auth handles the strict 401 path

Test infrastructure
-------------------
- tests/conftest.py: @pytest.fixture(autouse=True) _auto_user_context
  sets a default SimpleNamespace(id="test-user-autouse") on every test
  unless marked @pytest.mark.no_auto_user. Keeps existing 20+
  persistence tests passing without modification
- pyproject.toml [tool.pytest.ini_options]: register no_auto_user
  marker so pytest does not emit warnings for opt-out tests
- tests/test_user_context.py: 6 tests covering three-state semantics,
  Protocol duck typing, and require/optional APIs
- tests/test_thread_meta_repo.py: one test updated to pass owner_id=
  None explicitly where it was previously relying on the old default

Test results
------------
- test_user_context.py: 6 passed
- test_auth*.py + test_langgraph_auth.py + test_ensure_admin.py: 127
- test_run_event_store / test_run_repository / test_thread_meta_repo
  / test_feedback: 92 passed
- Full backend suite: 1905 passed, 2 failed (both @requires_llm flaky
  integration tests unrelated to auth), 1 skipped

* feat(auth): extend orphan migration to 2.0-rc persistence tables

_ensure_admin_user now runs a three-step pipeline on every boot:

  Step 1 (fatal):     admin user exists / is created / password is reset
  Step 2 (non-fatal): LangGraph store orphan threads → admin
  Step 3 (non-fatal): SQL persistence tables → admin
    - threads_meta
    - runs
    - run_events
    - feedback

Each step is idempotent. The fatal/non-fatal split mirrors PR #1728's
original philosophy: admin creation failure blocks startup (the system
is unusable without an admin), whereas migration failures log a warning
and let the service proceed (a partial migration is recoverable; a
missing admin is not).

Key helpers
-----------
- _iter_store_items(store, namespace, *, page_size=500):
  async generator that cursor-paginates across LangGraph store pages.
  Fixes PR #1728's hardcoded limit=1000 bug that would silently lose
  orphans beyond the first page.

- _migrate_orphaned_threads(store, admin_user_id):
  Rewritten to use _iter_store_items. Returns the migrated count so the
  caller can log it; raises only on unhandled exceptions.

- _migrate_orphan_sql_tables(admin_user_id):
  Imports the 4 ORM models lazily, grabs the shared session factory,
  runs one UPDATE per table in a single transaction, commits once.
  No-op when no persistence backend is configured (in-memory dev).

Tests: test_ensure_admin.py (8 passed)

* test(auth): port AUTH test plan docs + lint/format pass

- Port backend/docs/AUTH_TEST_PLAN.md and AUTH_UPGRADE.md from PR #1728
- Rename metadata.user_id → metadata.owner_id in AUTH_TEST_PLAN.md
  (4 occurrences from the original PR doc)
- ruff auto-fix UP037 in sentinel type annotations: drop quotes around
  "str | None | _AutoSentinel" now that from __future__ import
  annotations makes them implicit string forms
- ruff format: 2 files (app/gateway/app.py, runtime/user_context.py)

Note on test coverage additions:
- conftest.py autouse fixture was already added in commit 4 (had to
  be co-located with the repository changes to keep pre-existing
  persistence tests passing)
- cross-user isolation E2E tests (test_owner_isolation.py) deferred
  — enforcement is already proven by the 98-test repository suite
  via the autouse fixture + explicit _AUTO sentinel exercises
- New test cases (TC-API-17..20, TC-ATK-13, TC-MIG-01..07) listed
  in AUTH_TEST_PLAN.md are deferred to a follow-up PR — they are
  manual-QA test cases rather than pytest code, and the spec-level
  coverage is already met by test_user_context.py + the 98-test
  repository suite.

Final test results:
- Auth suite (test_auth*, test_langgraph_auth, test_ensure_admin,
  test_user_context): 186 passed
- Persistence suite (test_run_event_store, test_run_repository,
  test_thread_meta_repo, test_feedback): 98 passed
- Lint: ruff check + ruff format both clean

* test(auth): add cross-user isolation test suite

10 tests exercising the storage-layer owner filter by manually
switching the user_context contextvar between two users. Verifies
the safety invariant:

  After a repository write with owner_id=A, a subsequent read with
  owner_id=B must not return the row, and vice versa.

Covers all 4 tables that own user-scoped data:

TC-API-17  threads_meta  — read, search, update, delete cross-user
TC-API-18  runs          — get, list_by_thread, delete cross-user
TC-API-19  run_events    — list_messages, list_events, count_messages,
                           delete_by_thread (CRITICAL: raw conversation
                           content leak vector)
TC-API-20  feedback      — get, list_by_run, delete cross-user

Plus two meta-tests verifying the sentinel pattern itself:
- AUTO + unset contextvar raises RuntimeError
- explicit owner_id=None bypasses the filter (migration escape hatch)

Architecture note
-----------------
These tests bypass the HTTP layer by design. The full chain
(cookie → middleware → contextvar → repository) is covered piecewise:

- test_auth_middleware.py: middleware sets contextvar from cookies
- test_owner_isolation.py: repositories enforce isolation when
  contextvar is set to different users

Together they prove the end-to-end safety property without the
ceremony of spinning up a full TestClient + in-memory DB for every
router endpoint.

Tests pass: 231 (full auth + persistence + isolation suite)
Lint: clean

* refactor(auth): migrate user repository to SQLAlchemy ORM

Move the users table into the shared persistence engine so auth
matches the pattern of threads_meta, runs, run_events, and feedback —
one engine, one session factory, one schema init codepath.

New files
---------
- persistence/user/__init__.py, persistence/user/model.py: UserRow
  ORM class with partial unique index on (oauth_provider, oauth_id)
- Registered in persistence/models/__init__.py so
  Base.metadata.create_all() picks it up

Modified
--------
- auth/repositories/sqlite.py: rewritten as async SQLAlchemy,
  identical constructor pattern to the other four repositories
  (def __init__(self, session_factory) + self._sf = session_factory)
- auth/config.py: drop users_db_path field — storage is configured
  through config.database like every other table
- deps.py/get_local_provider: construct SQLiteUserRepository with
  the shared session factory, fail fast if engine is not initialised
- tests/test_auth.py: rewrite test_sqlite_round_trip_new_fields to
  use the shared engine (init_engine + close_engine in a tempdir)
- tests/test_auth_type_system.py: add per-test autouse fixture that
  spins up a scratch engine and resets deps._cached_* singletons

* refactor(auth): remove SQL orphan migration (unused in supported scenarios)

The _migrate_orphan_sql_tables helper existed to bind NULL owner_id
rows in threads_meta, runs, run_events, and feedback to the admin on
first boot. But in every supported upgrade path, it's a no-op:

  1. Fresh install: create_all builds fresh tables, no legacy rows
  2. No-auth → with-auth (no existing persistence DB): persistence
     tables are created fresh by create_all, no legacy rows
  3. No-auth → with-auth (has existing persistence DB from #1930):
     NOT a supported upgrade path — "有 DB 到有 DB" schema evolution
     is out of scope; users wipe DB or run manual ALTER

So the SQL orphan migration never has anything to do in the
supported matrix. Delete the function, simplify _ensure_admin_user
from a 3-step pipeline to a 2-step one (admin creation + LangGraph
store orphan migration only).

LangGraph store orphan migration stays: it serves the real
"no-auth → with-auth" upgrade path where a user's existing LangGraph
thread metadata has no owner_id field and needs to be stamped with
the newly-created admin's id.

Tests: 284 passed (auth + persistence + isolation)
Lint: clean

* security(auth): write initial admin password to 0600 file instead of logs

CodeQL py/clear-text-logging-sensitive-data flagged 3 call sites that
logged the auto-generated admin password to stdout via logger.info().
Production log aggregators (ELK/Splunk/etc) would have captured those
cleartext secrets. Replace with a shared helper that writes to
.deer-flow/admin_initial_credentials.txt with mode 0600, and log only
the path.

New file
--------
- app/gateway/auth/credential_file.py: write_initial_credentials()
  helper. Takes email, password, and a "initial"/"reset" label.
  Creates .deer-flow/ if missing, writes a header comment plus the
  email+password, chmods 0o600, returns the absolute Path.

Modified
--------
- app/gateway/app.py: both _ensure_admin_user paths (fresh creation
  + needs_setup password reset) now write to file and log the path
- app/gateway/auth/reset_admin.py: rewritten to use the shared ORM
  repo (SQLiteUserRepository with session_factory) and the
  credential_file helper. The previous implementation was broken
  after the earlier ORM refactor — it still imported _get_users_conn
  and constructed SQLiteUserRepository() without a session factory.

No tests changed — the three password-log sites are all exercised
via existing test_ensure_admin.py which checks that startup
succeeds, not that a specific string appears in logs.

CodeQL alerts 272, 283, 284: all resolved.

* security(auth): strict JWT validation in middleware (fix junk cookie bypass)

AUTH_TEST_PLAN test 7.5.8 expects junk cookies to be rejected with
401. The previous middleware behaviour was "presence-only": check
that some access_token cookie exists, then pass through. In
combination with my Task-12 decision to skip @require_auth
decorators on routes, this created a gap where a request with any
cookie-shaped string (e.g. access_token=not-a-jwt) would bypass
authentication on routes that do not touch the repository
(/api/models, /api/mcp/config, /api/memory, /api/skills, …).

Fix: middleware now calls get_current_user_from_request() strictly
and catches the resulting HTTPException to render a 401 with the
proper fine-grained error code (token_invalid, token_expired,
user_not_found, …). On success it stamps request.state.user and
the contextvar so repository-layer owner filters work downstream.

The 4 old "_with_cookie_passes" tests in test_auth_middleware.py
were written for the presence-only behaviour; they asserted that
a junk cookie would make the handler return 200. They are renamed
to "_with_junk_cookie_rejected" and their assertions flipped to
401. The negative path (no cookie → 401 not_authenticated)
is unchanged.

Verified:
  no cookie       → 401 not_authenticated
  junk cookie     → 401 token_invalid     (the fixed bug)
  expired cookie  → 401 token_expired

Tests: 284 passed (auth + persistence + isolation)
Lint: clean

* security(auth): wire @require_permission(owner_check=True) on isolation routes

Apply the require_permission decorator to all 28 routes that take a
{thread_id} path parameter. Combined with the strict middleware
(previous commit), this gives the double-layer protection that
AUTH_TEST_PLAN test 7.5.9 documents:

  Layer 1 (AuthMiddleware): cookie + JWT validation, rejects junk
                            cookies and stamps request.state.user
  Layer 2 (@require_permission with owner_check=True): per-resource
                            ownership verification via
                            ThreadMetaStore.check_access — returns
                            404 if a different user owns the thread

The decorator's owner_check branch is rewritten to use the SQL
thread_meta_repo (the 2.0-rc persistence layer) instead of the
LangGraph store path that PR #1728 used (_store_get / get_store
in routers/threads.py). The inject_record convenience is dropped
— no caller in 2.0 needs the LangGraph blob, and the SQL repo has
a different shape.

Routes decorated (28 total):
- threads.py: delete, patch, get, get-state, post-state, post-history
- thread_runs.py: post-runs, post-runs-stream, post-runs-wait,
  list_runs, get_run, cancel_run, join_run, stream_existing_run,
  list_thread_messages, list_run_messages, list_run_events,
  thread_token_usage
- feedback.py: create, list, stats, delete
- uploads.py: upload (added Request param), list, delete
- artifacts.py: get_artifact
- suggestions.py: generate (renamed body parameter to avoid
  conflict with FastAPI Request)

Test fixes:
- test_suggestions_router.py: bypass the decorator via __wrapped__
  (the unit tests cover parsing logic, not auth — no point spinning
  up a thread_meta_repo just to test JSON unwrapping)
- test_auth_middleware.py 4 fake-cookie tests: already updated in
  the previous commit (745bf432)

Tests: 293 passed (auth + persistence + isolation + suggestions)
Lint: clean

* security(auth): defense-in-depth fixes from release validation pass

Eight findings caught while running the AUTH_TEST_PLAN end-to-end against
the deployed sg_dev stack. Each is a pre-condition for shipping
release/2.0-rc that the previous PRs missed.

Backend hardening
- routers/auth.py: rate limiter X-Real-IP now requires AUTH_TRUSTED_PROXIES
  whitelist (CIDR/IP allowlist). Without nginx in front, the previous code
  honored arbitrary X-Real-IP, letting an attacker rotate the header to
  fully bypass the per-IP login lockout.
- routers/auth.py: 36-entry common-password blocklist via Pydantic
  field_validator on RegisterRequest + ChangePasswordRequest. The shared
  _validate_strong_password helper keeps the constraint in one place.
- routers/threads.py: ThreadCreateRequest + ThreadPatchRequest strip
  server-reserved metadata keys (owner_id, user_id) via Pydantic
  field_validator so a forged value can never round-trip back to other
  clients reading the same thread. The actual ownership invariant stays
  on the threads_meta row; this closes the metadata-blob echo gap.
- authz.py + thread_meta/sql.py: require_permission gains a require_existing
  flag plumbed through check_access(require_existing=True). Destructive
  routes (DELETE/PATCH/state-update/runs/feedback) now treat a missing
  thread_meta row as 404 instead of "untracked legacy thread, allow",
  closing the cross-user delete-idempotence gap where any user could
  successfully DELETE another user's deleted thread.
- repositories/sqlite.py + base.py: update_user raises UserNotFoundError
  on a vanished row instead of silently returning the input. Concurrent
  delete during password reset can no longer look like a successful update.
- runtime/user_context.py: resolve_owner_id() coerces User.id (UUID) to
  str at the contextvar boundary so SQLAlchemy String(64) columns can
  bind it. The whole 2.0-rc isolation pipeline was previously broken
  end-to-end (POST /api/threads → 500 "type 'UUID' is not supported").
- persistence/engine.py: SQLAlchemy listener enables PRAGMA journal_mode=WAL,
  synchronous=NORMAL, foreign_keys=ON on every new SQLite connection.
  TC-UPG-06 in the test plan expects WAL; previous code shipped with the
  default 'delete' journal.
- auth_middleware.py: stamp request.state.auth = AuthContext(...) so
  @require_permission's short-circuit fires; previously every isolation
  request did a duplicate JWT decode + users SELECT. Also unifies the
  401 payload through AuthErrorResponse(...).model_dump().
- app.py: _ensure_admin_user restructure removes the noqa F821 scoping
  bug where 'password' was referenced outside the branch that defined it.
  New _announce_credentials helper absorbs the duplicate log block in
  the fresh-admin and reset-admin branches.

* fix(frontend+nginx): rollout CSRF on every state-changing client path

The frontend was 100% broken in gateway-pro mode for any user trying to
open a specific chat thread. Three cumulative bugs each silently
masked the next.

LangGraph SDK CSRF gap (api-client.ts)
- The Client constructor took only apiUrl, no defaultHeaders, no fetch
  interceptor. The SDK's internal fetch never sent X-CSRF-Token, so
  every state-changing /api/langgraph-compat/* call (runs/stream,
  threads/search, threads/{tid}/history, ...) hit CSRFMiddleware and
  got 403 before reaching the auth check. UI symptom: empty thread page
  with no error message; the SPA's hooks swallowed the rejection.
- Fix: pass an onRequest hook that injects X-CSRF-Token from the
  csrf_token cookie per request. Reading the cookie per call (not at
  construction time) handles login / logout / password-change cookie
  rotation transparently. The SDK's prepareFetchOptions calls
  onRequest for both regular requests AND streaming/SSE/reconnect, so
  the same hook covers runs.stream and runs.joinStream.

Raw fetch CSRF gap (7 files)
- Audit: 11 frontend fetch sites, only 2 included CSRF (login/setup +
  account-settings change-password). The other 7 routed through raw
  fetch() with no header — suggestions, memory, agents, mcp, skills,
  uploads, and the local thread cleanup hook all 403'd silently.
- Fix: enhance fetcher.ts:fetchWithAuth to auto-inject X-CSRF-Token on
  POST/PUT/DELETE/PATCH from a single shared readCsrfCookie() helper.
  Convert all 7 raw fetch() callers to fetchWithAuth so the contract
  is centrally enforced. api-client.ts and fetcher.ts share
  readCsrfCookie + STATE_CHANGING_METHODS to avoid drift.

nginx routing + buffering (nginx.local.conf)
- The auth feature shipped without updating the nginx config: per-API
  explicit location blocks but no /api/v1/auth/, /api/feedback, /api/runs.
  The frontend's client-side fetches to /api/v1/auth/login/local 404'd
  from the Next.js side because nginx routed /api/* to the frontend.
- Fix: add catch-all `location /api/` that proxies to the gateway.
  nginx longest-prefix matching keeps the explicit blocks (/api/models,
  /api/threads regex, /api/langgraph/, ...) winning for their paths.
- Fix: disable proxy_buffering + proxy_request_buffering for the
  frontend `location /` block. Without it, nginx tries to spool large
  Next.js chunks into /var/lib/nginx/proxy (root-owned) and fails with
  Permission denied → ERR_INCOMPLETE_CHUNKED_ENCODING → ChunkLoadError.

* test(auth): release-validation test infra and new coverage

Test fixtures and unit tests added during the validation pass.

Router test helpers (NEW: tests/_router_auth_helpers.py)
- make_authed_test_app(): builds a FastAPI test app with a stub
  middleware that stamps request.state.user + request.state.auth and a
  permissive thread_meta_repo mock. TestClient-based router tests
  (test_artifacts_router, test_threads_router) use it instead of bare
  FastAPI() so the new @require_permission(owner_check=True) decorators
  short-circuit cleanly.
- call_unwrapped(): walks the __wrapped__ chain to invoke the underlying
  handler without going through the authz wrappers. Direct-call tests
  (test_uploads_router) use it. Typed with ParamSpec so the wrapped
  signature flows through.

Backend test additions
- test_auth.py: 7 tests for the new _get_client_ip trust model (no
  proxy / trusted proxy / untrusted peer / XFF rejection / invalid
  CIDR / no client). 5 tests for the password blocklist (literal,
  case-insensitive, strong password accepted, change-password binding,
  short-password length-check still fires before blocklist).
  test_update_user_raises_when_row_concurrently_deleted: closes a
  shipped-without-coverage gap on the new UserNotFoundError contract.
- test_thread_meta_repo.py: 4 tests for check_access(require_existing=True)
  — strict missing-row denial, strict owner match, strict owner mismatch,
  strict null-owner still allowed (shared rows survive the tightening).
- test_ensure_admin.py: 3 tests for _migrate_orphaned_threads /
  _iter_store_items pagination, covering the TC-UPG-02 upgrade story
  end-to-end via mock store. Closes the gap where the cursor pagination
  was untested even though the previous PR rewrote it.
- test_threads_router.py: 5 tests for _strip_reserved_metadata
  (owner_id removal, user_id removal, safe-keys passthrough, empty
  input, both-stripped).
- test_auth_type_system.py: replace "password123" fixtures with
  Tr0ub4dor3a / AnotherStr0ngPwd! so the new password blocklist
  doesn't reject the test data.

* docs(auth): refresh TC-DOCKER-05 + document Docker validation gap

- AUTH_TEST_PLAN.md TC-DOCKER-05: the previous expectation
  ("admin password visible in docker logs") was stale after the simplify
  pass that moved credentials to a 0600 file. The grep "Password:" check
  would have silently failed and given a false sense of coverage. New
  expectation matches the actual file-based path: 0600 file in
  DEER_FLOW_HOME, log shows the path (not the secret), reverse-grep
  asserts no leaked password in container logs.
- NEW: docs/AUTH_TEST_DOCKER_GAP.md documents the only un-executed
  block in the test plan (TC-DOCKER-01..06). Reason: sg_dev validation
  host has no Docker daemon installed. The doc maps each Docker case
  to an already-validated bare-metal equivalent (TC-1.1, TC-REENT-01,
  TC-API-02 etc.) so the gap is auditable, and includes pre-flight
  reproduction steps for whoever has Docker available.

---------

Co-authored-by: greatmengqi <chenmengqi.0376@bytedance.com>
2026-04-26 11:08:11 +08:00
rayhpeng
d8ecaf46c9 feat(persistence): add unified persistence layer with event store, token tracking, and feedback (#1930)
* feat(persistence): add SQLAlchemy 2.0 async ORM scaffold

Introduce a unified database configuration (DatabaseConfig) that
controls both the LangGraph checkpointer and the DeerFlow application
persistence layer from a single `database:` config section.

New modules:
- deerflow.config.database_config — Pydantic config with memory/sqlite/postgres backends
- deerflow.persistence — async engine lifecycle, DeclarativeBase with to_dict mixin, Alembic skeleton
- deerflow.runtime.runs.store — RunStore ABC + MemoryRunStore implementation

Gateway integration initializes/tears down the persistence engine in
the existing langgraph_runtime() context manager. Legacy checkpointer
config is preserved for backward compatibility.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(persistence): add RunEventStore ABC + MemoryRunEventStore

Phase 2-A prerequisite for event storage: adds the unified run event
stream interface (RunEventStore) with an in-memory implementation,
RunEventsConfig, gateway integration, and comprehensive tests (27 cases).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(persistence): add ORM models, repositories, DB/JSONL event stores, RunJournal, and API endpoints

Phase 2-B: run persistence + event storage + token tracking.

- ORM models: RunRow (with token fields), ThreadMetaRow, RunEventRow
- RunRepository implements RunStore ABC via SQLAlchemy ORM
- ThreadMetaRepository with owner access control
- DbRunEventStore with trace content truncation and cursor pagination
- JsonlRunEventStore with per-run files and seq recovery from disk
- RunJournal (BaseCallbackHandler) captures LLM/tool/lifecycle events,
  accumulates token usage by caller type, buffers and flushes to store
- RunManager now accepts optional RunStore for persistent backing
- Worker creates RunJournal, writes human_message, injects callbacks
- Gateway deps use factory functions (RunRepository when DB available)
- New endpoints: messages, run messages, run events, token-usage
- ThreadCreateRequest gains assistant_id field
- 92 tests pass (33 new), zero regressions

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(persistence): add user feedback + follow-up run association

Phase 2-C: feedback and follow-up tracking.

- FeedbackRow ORM model (rating +1/-1, optional message_id, comment)
- FeedbackRepository with CRUD, list_by_run/thread, aggregate stats
- Feedback API endpoints: create, list, stats, delete
- follow_up_to_run_id in RunCreateRequest (explicit or auto-detected
  from latest successful run on the thread)
- Worker writes follow_up_to_run_id into human_message event metadata
- Gateway deps: feedback_repo factory + getter
- 17 new tests (14 FeedbackRepository + 3 follow-up association)
- 109 total tests pass, zero regressions

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* test+config: comprehensive Phase 2 test coverage + deprecate checkpointer config

- config.example.yaml: deprecate standalone checkpointer section, activate
  unified database:sqlite as default (drives both checkpointer + app data)
- New: test_thread_meta_repo.py (14 tests) — full ThreadMetaRepository coverage
  including check_access owner logic, list_by_owner pagination
- Extended test_run_repository.py (+4 tests) — completion preserves fields,
  list ordering desc, limit, owner_none returns all
- Extended test_run_journal.py (+8 tests) — on_chain_error, track_tokens=false,
  middleware no ai_message, unknown caller tokens, convenience fields,
  tool_error, non-summarization custom event
- Extended test_run_event_store.py (+7 tests) — DB batch seq continuity,
  make_run_event_store factory (memory/db/jsonl/fallback/unknown)
- Extended test_phase2b_integration.py (+4 tests) — create_or_reject persists,
  follow-up metadata, summarization in history, full DB-backed lifecycle
- Fixed DB integration test to use proper fake objects (not MagicMock)
  for JSON-serializable metadata
- 157 total Phase 2 tests pass, zero regressions

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* config: move default sqlite_dir to .deer-flow/data

Keep SQLite databases alongside other DeerFlow-managed data
(threads, memory) under the .deer-flow/ directory instead of a
top-level ./data folder.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(persistence): remove UTFJSON, use engine-level json_serializer + datetime.now()

- Replace custom UTFJSON type with standard sqlalchemy.JSON in all ORM
  models. Add json_serializer=json.dumps(ensure_ascii=False) to all
  create_async_engine calls so non-ASCII text (Chinese etc.) is stored
  as-is in both SQLite and Postgres.
- Change ORM datetime defaults from datetime.now(UTC) to datetime.now(),
  remove UTC imports.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(gateway): simplify deps.py with getter factory + inline repos

- Replace 6 identical getter functions with _require() factory.
- Inline 3 _make_*_repo() factories into langgraph_runtime(), call
  get_session_factory() once instead of 3 times.
- Add thread_meta upsert in start_run (services.py).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(docker): add UV_EXTRAS build arg for optional dependencies

Support installing optional dependency groups (e.g. postgres) at
Docker build time via UV_EXTRAS build arg:
  UV_EXTRAS=postgres docker compose build

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(journal): fix flush, token tracking, and consolidate tests

RunJournal fixes:
- _flush_sync: retain events in buffer when no event loop instead of
  dropping them; worker's finally block flushes via async flush().
- on_llm_end: add tool_calls filter and caller=="lead_agent" guard for
  ai_message events; mark message IDs for dedup with record_llm_usage.
- worker.py: persist completion data (tokens, message count) to RunStore
  in finally block.

Model factory:
- Auto-inject stream_usage=True for BaseChatOpenAI subclasses with
  custom api_base, so usage_metadata is populated in streaming responses.

Test consolidation:
- Delete test_phase2b_integration.py (redundant with existing tests).
- Move DB-backed lifecycle test into test_run_journal.py.
- Add tests for stream_usage injection in test_model_factory.py.
- Clean up executor/task_tool dead journal references.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(events): widen content type to str|dict in all store backends

Allow event content to be a dict (for structured OpenAI-format messages)
in addition to plain strings. Dict values are JSON-serialized for the DB
backend and deserialized on read; memory and JSONL backends handle dicts
natively. Trace truncation now serializes dicts to JSON before measuring.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(events): use metadata flag instead of heuristic for dict content detection

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(converters): add LangChain-to-OpenAI message format converters

Pure functions langchain_to_openai_message, langchain_to_openai_completion,
langchain_messages_to_openai, and _infer_finish_reason for converting
LangChain BaseMessage objects to OpenAI Chat Completions format, used by
RunJournal for event storage. 15 unit tests added.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(converters): handle empty list content as null, clean up test

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(events): human_message content uses OpenAI user message format

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(events): ai_message uses OpenAI format, add ai_tool_call message event

- ai_message content now uses {"role": "assistant", "content": "..."} format
- New ai_tool_call message event emitted when lead_agent LLM responds with tool_calls
- ai_tool_call uses langchain_to_openai_message converter for consistent format
- Both events include finish_reason in metadata ("stop" or "tool_calls")

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(events): add tool_result message event with OpenAI tool message format

Cache tool_call_id from on_tool_start keyed by run_id as fallback for on_tool_end,
then emit a tool_result message event (role=tool, tool_call_id, content) after each
successful tool completion.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(events): summary content uses OpenAI system message format

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(events): replace llm_start/llm_end with llm_request/llm_response in OpenAI format

Add on_chat_model_start to capture structured prompt messages as llm_request events.
Replace llm_end trace events with llm_response using OpenAI Chat Completions format.
Track llm_call_index to pair request/response events.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(events): add record_middleware method for middleware trace events

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* test(events): add full run sequence integration test for OpenAI content format

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(events): align message events with checkpoint format and add middleware tag injection

- Message events (ai_message, ai_tool_call, tool_result, human_message) now use
  BaseMessage.model_dump() format, matching LangGraph checkpoint values.messages
- on_tool_end extracts tool_call_id/name/status from ToolMessage objects
- on_tool_error now emits tool_result message events with error status
- record_middleware uses middleware:{tag} event_type and middleware category
- Summarization custom events use middleware:summarize category
- TitleMiddleware injects middleware:title tag via get_config() inheritance
- SummarizationMiddleware model bound with middleware:summarize tag
- Worker writes human_message using HumanMessage.model_dump()

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(threads): switch search endpoint to threads_meta table and sync title

- POST /api/threads/search now queries threads_meta table directly,
  removing the two-phase Store + Checkpointer scan approach
- Add ThreadMetaRepository.search() with metadata/status filters
- Add ThreadMetaRepository.update_display_name() for title sync
- Worker syncs checkpoint title to threads_meta.display_name on run completion
- Map display_name to values.title in search response for API compatibility

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(threads): history endpoint reads messages from event store

- POST /api/threads/{thread_id}/history now combines two data sources:
  checkpointer for checkpoint_id, metadata, title, thread_data;
  event store for messages (complete history, not truncated by summarization)
- Strip internal LangGraph metadata keys from response
- Remove full channel_values serialization in favor of selective fields

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix: remove duplicate optional-dependencies header in pyproject.toml

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(middleware): pass tagged config to TitleMiddleware ainvoke call

Without the config, the middleware:title tag was not injected,
causing the LLM response to be recorded as a lead_agent ai_message
in run_events.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix: resolve merge conflict in .env.example

Keep both DATABASE_URL (from persistence-scaffold) and WECOM
credentials (from main) after the merge.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(persistence): address review feedback on PR #1851

- Fix naive datetime.now() → datetime.now(UTC) in all ORM models
- Fix seq race condition in DbRunEventStore.put() with FOR UPDATE
  and UNIQUE(thread_id, seq) constraint
- Encapsulate _store access in RunManager.update_run_completion()
- Deduplicate _store.put() logic in RunManager via _persist_to_store()
- Add update_run_completion to RunStore ABC + MemoryRunStore
- Wire follow_up_to_run_id through the full create path
- Add error recovery to RunJournal._flush_sync() lost-event scenario
- Add migration note for search_threads breaking change
- Fix test_checkpointer_none_fix mock to set database=None

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* chore: update uv.lock

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(persistence): address 22 review comments from CodeQL, Copilot, and Code Quality

Bug fixes:
- Sanitize log params to prevent log injection (CodeQL)
- Reset threads_meta.status to idle/error when run completes
- Attach messages only to latest checkpoint in /history response
- Write threads_meta on POST /threads so new threads appear in search

Lint fixes:
- Remove unused imports (journal.py, migrations/env.py, test_converters.py)
- Convert lambda to named function (engine.py, Ruff E731)
- Remove unused logger definitions in repos (Ruff F841)
- Add logging to JSONL decode errors and empty except blocks
- Separate assert side-effects in tests (CodeQL)
- Remove unused local variables in tests (Ruff F841)
- Fix max_trace_content truncation to use byte length, not char length

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* style: apply ruff format to persistence and runtime files

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* Potential fix for pull request finding 'Statement has no effect'

Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com>

* refactor(runtime): introduce RunContext to reduce run_agent parameter bloat

Extract checkpointer, store, event_store, run_events_config, thread_meta_repo,
and follow_up_to_run_id into a frozen RunContext dataclass. Add get_run_context()
in deps.py to build the base context from app.state singletons. start_run() uses
dataclasses.replace() to enrich per-run fields before passing ctx to run_agent.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(gateway): move sanitize_log_param to app/gateway/utils.py

Extract the log-injection sanitizer from routers/threads.py into a shared
utils module and rename to sanitize_log_param (public API). Eliminates the
reverse service → router import in services.py.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* perf: use SQL aggregation for feedback stats and thread token usage

Replace Python-side counting in FeedbackRepository.aggregate_by_run with
a single SELECT COUNT/SUM query. Add RunStore.aggregate_tokens_by_thread
abstract method with SQL GROUP BY implementation in RunRepository and
Python fallback in MemoryRunStore. Simplify the thread_token_usage
endpoint to delegate to the new method, eliminating the limit=10000
truncation risk.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* docs: annotate DbRunEventStore.put() as low-frequency path

Add docstring clarifying that put() opens a per-call transaction with
FOR UPDATE and should only be used for infrequent writes (currently
just the initial human_message event). High-throughput callers should
use put_batch() instead.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(threads): fall back to Store search when ThreadMetaRepository is unavailable

When database.backend=memory (default) or no SQL session factory is
configured, search_threads now queries the LangGraph Store instead of
returning 503. Returns empty list if neither Store nor repo is available.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(persistence): introduce ThreadMetaStore ABC for backend-agnostic thread metadata

Add ThreadMetaStore abstract base class with create/get/search/update/delete
interface. ThreadMetaRepository (SQL) now inherits from it. New
MemoryThreadMetaStore wraps LangGraph BaseStore for memory-mode deployments.

deps.py now always provides a non-None thread_meta_repo, eliminating all
`if thread_meta_repo is not None` guards in services.py, worker.py, and
routers/threads.py. search_threads no longer needs a Store fallback branch.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(history): read messages from checkpointer instead of RunEventStore

The /history endpoint now reads messages directly from the
checkpointer's channel_values (the authoritative source) instead of
querying RunEventStore.list_messages(). The RunEventStore API is
preserved for other consumers.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(persistence): address new Copilot review comments

- feedback.py: validate thread_id/run_id before deleting feedback
- jsonl.py: add path traversal protection with ID validation
- run_repo.py: parse `before` to datetime for PostgreSQL compat
- thread_meta_repo.py: fix pagination when metadata filter is active
- database_config.py: use resolve_path for sqlite_dir consistency

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* Implement skill self-evolution and skill_manage flow (#1874)

* chore: ignore .worktrees directory

* Add skill_manage self-evolution flow

* Fix CI regressions for skill_manage

* Address PR review feedback for skill evolution

* fix(skill-evolution): preserve history on delete

* fix(skill-evolution): tighten scanner fallbacks

* docs: add skill_manage e2e evidence screenshot

* fix(skill-manage): avoid blocking fs ops in session runtime

---------

Co-authored-by: Willem Jiang <willem.jiang@gmail.com>

* fix(config): resolve sqlite_dir relative to CWD, not Paths.base_dir

resolve_path() resolves relative to Paths.base_dir (.deer-flow),
which double-nested the path to .deer-flow/.deer-flow/data/app.db.
Use Path.resolve() (CWD-relative) instead.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* Feature/feishu receive file (#1608)

* feat(feishu): add channel file materialization hook for inbound messages

- Introduce Channel.receive_file(msg, thread_id) as a base method for file materialization; default is no-op.
- Implement FeishuChannel.receive_file to download files/images from Feishu messages, save to sandbox, and inject virtual paths into msg.text.
- Update ChannelManager to call receive_file for any channel if msg.files is present, enabling downstream model access to user-uploaded files.
- No impact on Slack/Telegram or other channels (they inherit the default no-op).

* style(backend): format code with ruff for lint compliance

- Auto-formatted packages/harness/deerflow/agents/factory.py and tests/test_create_deerflow_agent.py using `ruff format`
- Ensured both files conform to project linting standards
- Fixes CI lint check failures caused by code style issues

* fix(feishu): handle file write operation asynchronously to prevent blocking

* fix(feishu): rename GetMessageResourceRequest to _GetMessageResourceRequest and remove redundant code

* test(feishu): add tests for receive_file method and placeholder replacement

* fix(manager): remove unnecessary type casting for channel retrieval

* fix(feishu): update logging messages to reflect resource handling instead of image

* fix(feishu): sanitize filename by replacing invalid characters in file uploads

* fix(feishu): improve filename sanitization and reorder image key handling in message processing

* fix(feishu): add thread lock to prevent filename conflicts during file downloads

* fix(test): correct bad merge in test_feishu_parser.py

* chore: run ruff and apply formatting cleanup
fix(feishu): preserve rich-text attachment order and improve fallback filename handling

* fix(docker): restore gateway env vars and fix langgraph empty arg issue (#1915)

Two production docker-compose.yaml bugs prevent `make up` from working:

1. Gateway missing DEER_FLOW_CONFIG_PATH and DEER_FLOW_EXTENSIONS_CONFIG_PATH
   environment overrides. Added in fb2d99f (#1836) but accidentally reverted
   by ca2fb95 (#1847). Without them, gateway reads host paths from .env via
   env_file, causing FileNotFoundError inside the container.

2. Langgraph command fails when LANGGRAPH_ALLOW_BLOCKING is unset (default).
   Empty $${allow_blocking} inserts a bare space between flags, causing
   ' --no-reload' to be parsed as unexpected extra argument. Fix by building
   args string first and conditionally appending --allow-blocking.

Co-authored-by: cooper <cooperfu@tencent.com>

* fix(frontend): resolve invalid HTML nesting and tabnabbing vulnerabilities (#1904)

* fix(frontend): resolve invalid HTML nesting and tabnabbing vulnerabilities

Fix `<button>` inside `<a>` invalid HTML in artifact components and add
missing `noopener,noreferrer` to `window.open` calls to prevent reverse
tabnabbing.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix(frontend): address Copilot review on tabnabbing and double-tab-open

Remove redundant parent onClick on web_fetch ChainOfThoughtStep to
prevent opening two tabs on link click, and explicitly null out
window.opener after window.open() for defensive tabnabbing hardening.

---------

Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>

* refactor(persistence): organize entities into per-entity directories

Restructure the persistence layer from horizontal "models/ + repositories/"
split into vertical entity-aligned directories. Each entity (thread_meta,
run, feedback) now owns its ORM model, abstract interface (where applicable),
and concrete implementations under a single directory with an aggregating
__init__.py for one-line imports.

Layout:
  persistence/thread_meta/{base,model,sql,memory}.py
  persistence/run/{model,sql}.py
  persistence/feedback/{model,sql}.py

models/__init__.py is kept as a facade so Alembic autogenerate continues to
discover all ORM tables via Base.metadata. RunEventRow remains under
models/run_event.py because its storage implementation lives in
runtime/events/store/db.py and has no matching repository directory.

The repositories/ directory is removed entirely. All call sites in
gateway/deps.py and tests are updated to import from the new entity
packages, e.g.:

    from deerflow.persistence.thread_meta import ThreadMetaRepository
    from deerflow.persistence.run import RunRepository
    from deerflow.persistence.feedback import FeedbackRepository

Full test suite passes (1690 passed, 14 skipped).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix(gateway): sync thread rename and delete through ThreadMetaStore

The POST /threads/{id}/state endpoint previously synced title changes
only to the LangGraph Store via _store_upsert. In sqlite mode the search
endpoint reads from the ThreadMetaRepository SQL table, so renames never
appeared in /threads/search until the next agent run completed (worker.py
syncs title from checkpoint to thread_meta in its finally block).

Likewise the DELETE /threads/{id} endpoint cleaned up the filesystem,
Store, and checkpointer but left the threads_meta row orphaned in sqlite,
so deleted threads kept appearing in /threads/search.

Fix both endpoints by routing through the ThreadMetaStore abstraction
which already has the correct sqlite/memory implementations wired up by
deps.py. The rename path now calls update_display_name() and the delete
path calls delete() — both work uniformly across backends.

Verified end-to-end with curl in gateway mode against sqlite backend.
Existing test suite (1690 passed) and focused router/repo tests pass.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor(gateway): route all thread metadata access through ThreadMetaStore

Following the rename/delete bug fix in PR1, migrate the remaining direct
LangGraph Store reads/writes in the threads router and services to the
ThreadMetaStore abstraction so that the sqlite and memory backends behave
identically and the legacy dual-write paths can be removed.

Migrated endpoints (threads.py):
- create_thread: idempotency check + write now use thread_meta_repo.get/create
  instead of dual-writing the LangGraph Store and the SQL row.
- get_thread: reads from thread_meta_repo.get; the checkpoint-only fallback
  for legacy threads is preserved.
- patch_thread: replaced _store_get/_store_put with thread_meta_repo.update_metadata.
- delete_thread_data: dropped the legacy store.adelete; thread_meta_repo.delete
  already covers it.

Removed dead code (services.py):
- _upsert_thread_in_store — redundant with the immediately following
  thread_meta_repo.create() call.
- _sync_thread_title_after_run — worker.py's finally block already syncs
  the title via thread_meta_repo.update_display_name() after each run.

Removed dead code (threads.py):
- _store_get / _store_put / _store_upsert helpers (no remaining callers).
- THREADS_NS constant.
- get_store import (router no longer touches the LangGraph Store directly).

New abstract method:
- ThreadMetaStore.update_metadata(thread_id, metadata) merges metadata into
  the thread's metadata field. Implemented in both ThreadMetaRepository (SQL,
  read-modify-write inside one session) and MemoryThreadMetaStore. Three new
  unit tests cover merge / empty / nonexistent behaviour.

Net change: -134 lines. Full test suite: 1693 passed, 14 skipped.
Verified end-to-end with curl in gateway mode against sqlite backend
(create / patch / get / rename / search / delete).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com>
Co-authored-by: DanielWalnut <45447813+hetaoBackend@users.noreply.github.com>
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
Co-authored-by: JilongSun <965640067@qq.com>
Co-authored-by: jie <49781832+stan-fu@users.noreply.github.com>
Co-authored-by: cooper <cooperfu@tencent.com>
Co-authored-by: yangzheli <43645580+yangzheli@users.noreply.github.com>
2026-04-26 11:05:47 +08:00
JerryChaox
4e72410154
fix(gateway): bound lifespan shutdown hooks to prevent worker hang under uvicorn reload (#2331)
* fix(gateway): bound lifespan shutdown hooks to prevent worker hang

Gateway worker can hang indefinitely in `uvicorn --reload` mode with
the listening socket still bound — all /api/* requests return 504,
and SIGKILL is the only recovery.

Root cause (py-spy dump from a reproduction showed 16+ stacked frames
of signal_handler -> Event.set -> threading.Lock.__enter__ on the
main thread): CPython's `threading.Event` uses `Condition(Lock())`
where the inner Lock is non-reentrant. uvicorn's BaseReload signal
handler calls `should_exit.set()` directly from signal context; if a
second signal (SIGTERM/SIGHUP from the reload supervisor, or
watchfiles-triggered reload) arrives while the first handler holds
the Lock, the reentrant call deadlocks on itself.

The reload supervisor keeps sending those signals only when the
worker fails to exit promptly. DeerFlow's lifespan currently awaits
`stop_channel_service()` with no timeout; if a channel's `stop()`
stalls (e.g. Feishu/Slack WebSocket waiting for an ack), the worker
can't exit, the supervisor keeps signaling, and the deadlock becomes
reachable.

This is a defense-in-depth fix — it does not repair the upstream
uvicorn/CPython issue, but it ensures DeerFlow's lifespan exits
within a bounded window so the supervisor has no reason to keep
firing signals. No behavior change on the happy path.

Wraps the shutdown hook in `asyncio.wait_for(timeout=5.0)` and logs
a warning on timeout before proceeding to worker exit.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* Update backend/app/gateway/app.py

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

* style: apply make format (ruff) to test assertions

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
2026-04-23 19:41:26 +08:00
rayhpeng
34e835bc33
feat(gateway): implement LangGraph Platform API in Gateway, replace langgraph-cli (#1403)
* feat(gateway): implement LangGraph Platform API in Gateway, replace langgraph-cli

Implement all core LangGraph Platform API endpoints in the Gateway,
allowing it to fully replace the langgraph-cli dev server for local
development. This eliminates a heavyweight dependency and simplifies
the development stack.

Changes:
- Add runs lifecycle endpoints (create, stream, wait, cancel, join)
- Add threads CRUD and search endpoints
- Add assistants compatibility endpoints (search, get, graph, schemas)
- Add StreamBridge (in-memory pub/sub for SSE) and async provider
- Add RunManager with atomic create_or_reject (eliminates TOCTOU race)
- Add worker with interrupt/rollback cancel actions and runtime context injection
- Route /api/langgraph/* to Gateway in nginx config
- Skip langgraph-cli startup by default (SKIP_LANGGRAPH_SERVER=0 to restore)
- Add unit tests for RunManager, SSE format, and StreamBridge

* fix: drain bridge queue on client disconnect to prevent backpressure

When on_disconnect=continue, keep consuming events from the bridge
without yielding, so the worker is not blocked by a full queue.
Only on_disconnect=cancel breaks out immediately.

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

* fix: remove pytest import

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

* fix: Fix default stream_mode to ["values", "messages-tuple"]

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

* fix: Remove unused if_exists field from ThreadCreateRequest

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

* fix: address review comments on gateway LangGraph API

- Mount runs.py router in app.py (missing include_router)
- Normalize interrupt_before/after "*" to node list before run_agent()
- Use entry.id for SSE event ID instead of counter
- Drain bridge queue on disconnect when on_disconnect=continue
- Reuse serialization helper in wait_run() for consistent wire format
- Reject unsupported multitask_strategy with 400
- Remove SKIP_LANGGRAPH_SERVER fallback, always use Gateway

* feat: extract app.state access into deps.py

Encapsulate read/write operations for singleton objects (RunManager,
StreamBridge, checkpointer) held in app.state into a shared utility,
reducing repeated access patterns across router modules.

* feat: extract deerflow.runtime.serialization module with tests

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor: replace duplicated serialization with deerflow.runtime.serialization

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat: extract app/gateway/services.py with run lifecycle logic

Create a service layer that centralizes SSE formatting, input/config
normalization, and run lifecycle management. Router modules will delegate
to these functions instead of using private cross-imported helpers.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* refactor: wire routers to use services layer, remove cross-module private imports

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* style: apply ruff formatting to refactored files

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat(runtime): support LangGraph dev server and add compat route

- Enable official LangGraph dev server for local development workflow
- Decouple runtime components from agents package for better separation
- Provide gateway-backed fallback route when dev server is skipped
- Simplify lifecycle management using context manager in gateway

* feat(runtime): add Store providers with auto-backend selection

- Add async_provider.py and provider.py under deerflow/runtime/store/
- Support memory, sqlite, postgres backends matching checkpointer config
- Integrate into FastAPI lifespan via AsyncExitStack in deps.py
- Replace hardcoded InMemoryStore with config-driven factory

* refactor(gateway): migrate thread management from checkpointer to Store and resolve multiple endpoint failures

- Add Store-backed CRUD helpers (_store_get, _store_put, _store_upsert)
- Replace checkpoint-scanning search with two-phase strategy:
  phase 1 reads Store (O(threads)), phase 2 backfills from checkpointer
  for legacy/LangGraph Server threads with lazy migration
- Extend Store record schema with values field for title persistence
- Sync thread title from checkpoint to Store after run completion
- Fix /threads/{id}/runs/{run_id}/stream 405 by accepting both
  GET and POST methods; POST handles interrupt/rollback actions
- Fix /threads/{id}/state 500 by separating read_config and
  write_config, adding checkpoint_ns to configurable, and
  shallow-copying checkpoint/metadata before mutation
- Sync title to Store on state update for immediate search reflection
- Move _upsert_thread_in_store into services.py, remove duplicate logic
- Add _sync_thread_title_after_run: await run task, read final
  checkpoint title, write back to Store record
- Spawn title sync as background task from start_run when Store exists

* refactor(runtime): deduplicate store and checkpointer provider logic

Extract _ensure_sqlite_parent_dir() helper into checkpointer/provider.py
and use it in all three places that previously inlined the same mkdir logic.
Consolidate duplicate error constants in store/async_provider.py by importing
from store/provider.py instead of redefining them.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* refactor(runtime): move SQLite helpers to runtime/store, checkpointer imports from store

_resolve_sqlite_conn_str and _ensure_sqlite_parent_dir now live in
runtime/store/provider.py. agents/checkpointer/provider and
agents/checkpointer/async_provider import from there, reversing the
previous dependency direction (store → checkpointer becomes
checkpointer → store).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* refactor(runtime): extract SQLite helpers into runtime/store/_sqlite_utils.py

Move resolve_sqlite_conn_str and ensure_sqlite_parent_dir out of
checkpointer/provider.py into a dedicated _sqlite_utils module.
Functions are now public (no underscore prefix), making cross-module
imports semantically correct. All four provider files import from
the single shared location.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(gateway): use adelete_thread to fully remove thread checkpoints on delete

AsyncSqliteSaver has no adelete method — the previous hasattr check
always evaluated to False, silently leaving all checkpoint rows in the
database. Switch to adelete_thread(thread_id) which deletes every
checkpoint and pending-write row for the thread across all namespaces
(including sub-graph checkpoints).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(gateway): remove dead bridge_cm/ckpt_cm code and fix StrEnum lint

app.py had unreachable code after the async-with lifespan refactor:
bridge_cm and ckpt_cm were referenced but never defined (F821), and
the channel service startup/shutdown was outside the langgraph_runtime
block so it never ran. Move channel service lifecycle inside the
async-with block where it belongs.

Replace str+Enum inheritance in RunStatus and DisconnectMode with
StrEnum as suggested by UP042.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* style: format with ruff

---------

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
Co-authored-by: JeffJiang <for-eleven@hotmail.com>
Co-authored-by: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-03-30 16:02:23 +08:00
amdoi7.
8b0f3fe233
fix(threads): clean up local thread data after thread deletion (#1262)
* fix(threads): clean up local thread data after thread deletion

Delete DeerFlow-managed thread directories after the web UI removes a LangGraph thread.
This keeps local thread data in sync with conversation deletion and adds regression coverage for the cleanup flow.

* fix(threads): address thread cleanup review feedback

Encode thread cleanup URLs in the web client, keep cache updates explicit when no thread search data is cached, and return a generic 500 response from the cleanup endpoint while documenting the sanitized error behavior.

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Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
2026-03-24 00:36:08 +08:00
DanielWalnut
76803b826f
refactor: split backend into harness (deerflow.*) and app (app.*) (#1131)
* refactor: extract shared utils to break harness→app cross-layer imports

Move _validate_skill_frontmatter to src/skills/validation.py and
CONVERTIBLE_EXTENSIONS + convert_file_to_markdown to src/utils/file_conversion.py.
This eliminates the two reverse dependencies from client.py (harness layer)
into gateway/routers/ (app layer), preparing for the harness/app package split.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* refactor: split backend/src into harness (deerflow.*) and app (app.*)

Physically split the monolithic backend/src/ package into two layers:

- **Harness** (`packages/harness/deerflow/`): publishable agent framework
  package with import prefix `deerflow.*`. Contains agents, sandbox, tools,
  models, MCP, skills, config, and all core infrastructure.

- **App** (`app/`): unpublished application code with import prefix `app.*`.
  Contains gateway (FastAPI REST API) and channels (IM integrations).

Key changes:
- Move 13 harness modules to packages/harness/deerflow/ via git mv
- Move gateway + channels to app/ via git mv
- Rename all imports: src.* → deerflow.* (harness) / app.* (app layer)
- Set up uv workspace with deerflow-harness as workspace member
- Update langgraph.json, config.example.yaml, all scripts, Docker files
- Add build-system (hatchling) to harness pyproject.toml
- Add PYTHONPATH=. to gateway startup commands for app.* resolution
- Update ruff.toml with known-first-party for import sorting
- Update all documentation to reflect new directory structure

Boundary rule enforced: harness code never imports from app.
All 429 tests pass. Lint clean.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* chore: add harness→app boundary check test and update docs

Add test_harness_boundary.py that scans all Python files in
packages/harness/deerflow/ and fails if any `from app.*` or
`import app.*` statement is found. This enforces the architectural
rule that the harness layer never depends on the app layer.

Update CLAUDE.md to document the harness/app split architecture,
import conventions, and the boundary enforcement test.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* feat: add config versioning with auto-upgrade on startup

When config.example.yaml schema changes, developers' local config.yaml
files can silently become outdated. This adds a config_version field and
auto-upgrade mechanism so breaking changes (like src.* → deerflow.*
renames) are applied automatically before services start.

- Add config_version: 1 to config.example.yaml
- Add startup version check warning in AppConfig.from_file()
- Add scripts/config-upgrade.sh with migration registry for value replacements
- Add `make config-upgrade` target
- Auto-run config-upgrade in serve.sh and start-daemon.sh before starting services
- Add config error hints in service failure messages

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix comments

* fix: update src.* import in test_sandbox_tools_security to deerflow.*

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix: handle empty config and search parent dirs for config.example.yaml

Address Copilot review comments on PR #1131:
- Guard against yaml.safe_load() returning None for empty config files
- Search parent directories for config.example.yaml instead of only
  looking next to config.yaml, fixing detection in common setups

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix: correct skills root path depth and config_version type coercion

- loader.py: fix get_skills_root_path() to use 5 parent levels (was 3)
  after harness split, file lives at packages/harness/deerflow/skills/
  so parent×3 resolved to backend/packages/harness/ instead of backend/
- app_config.py: coerce config_version to int() before comparison in
  _check_config_version() to prevent TypeError when YAML stores value
  as string (e.g. config_version: "1")
- tests: add regression tests for both fixes

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix: update test imports from src.* to deerflow.*/app.* after harness refactor

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

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Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
2026-03-14 22:55:52 +08:00