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11 Commits
| Author | SHA1 | Message | Date | |
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AnoobFeng
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5acd0b3ba8
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fix(gateway): offload gateway upload file IO (#3935)
* fix(gateway): offload gateway upload file IO Move Gateway upload router filesystem work off the asyncio event loop by using a dedicated ContextVar-preserving file IO executor. Use async sandbox acquisition for non-mounted sandbox uploads and offload remote sandbox sync together with host file reads. Add blocking-IO regression coverage for upload, list, delete, and remote sandbox sync paths. * fix(gateway): align file IO worker env var prefix Rename the file IO executor worker-count environment variable from DEERFLOW_FILE_IO_WORKERS to DEER_FLOW_FILE_IO_WORKERS to match the repo's existing runtime configuration prefix convention. |
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DanielWalnut
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25ea6970a6
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feat(runtime): implement goal continuations (#3858)
* implement goal continuations * fix(goal): address review findings for goal continuations - goal: key the no-progress breaker on a signature of the latest visible assistant evidence instead of the evaluator's volatile free-text, so it actually fires on stalled turns; thread the signature through every worker persist / no-progress call site - goal: align _stand_down_reason default caps with should_continue_goal (8 / 2) so the two gate functions agree on goals missing the fields - runtime: offload the synchronous checkpointer fallback via asyncio.to_thread (goal.py + worker.py) to keep blocking IO off the loop - frontend: i18n the GoalStatus "Goal" label (goalLabel in en/zh/types) - frontend: extract pure composer helpers into input-box-helpers.ts with unit tests (parseGoalCommand, readGoalResponseError, skill suggestions) - tests: cover the evidence-based no-progress and default-cap behavior - docs: align backend/AGENTS.md goal paragraph with actual behavior - e2e: prettier-format chat.spec.ts (fixes the lint-frontend CI failure) Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * feat(frontend): hide goal continuation counter until the agent continues The goal status bar rendered a raw "0/8" before any auto-continuation, which read as a mysterious score. Now the counter is hidden until continuation_count > 0, then shows "Continuing N/M" with a tooltip explaining the auto-continuation cap. - Extract getGoalContinuationDisplay into a pure helper (hides at 0) + unit tests - Add goalContinuing / goalContinuationTooltip i18n keys (en/zh/types) Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(goal): address review findings for goal continuations Frontend correctness - Fix the optimistic /goal result permanently shadowing server goal state: the streamed continuation counter never surfaced for a goal set in-session. Extract a shared useActiveGoal hook (used by both chat pages) that reconciles the optimistic copy with server state via a goalReconciliationKey, de-duping the copy-pasted goal block across the two pages. - Stop /goal status|clear failures from escaping handleSubmit as unhandled rejections (handleGoalCommand now returns success; the run only starts when a goal was actually saved). - Use a function replacer for the goal-status toast so an objective containing $&/$1 isn't treated as a replacement pattern. Backend cleanliness / correctness - De-duplicate four byte-identical helpers (_call_checkpointer_method, _message_type, _additional_kwargs, _is_visible_message) by importing them from runtime.goal instead of re-defining them in the run worker. - Remove the dead `checkpoint_tuple.tasks` durability guard (CheckpointTuple has no tasks field) and document that pending_writes is the durability signal. - Decompose the 176-line _prepare_goal_continuation_input: extract _reread_goal_and_checkpoint and a _persist closure so the thread-unchanged guard and stand-down persistence aren't open-coded three times. Document the last-writer-wins write-window limitation as a follow-up. - Add a shared parse_goal_command helper and use it from the TUI and IM-channel /goal handlers (one place for the status/clear/set semantics). Tests - Restore the 11 command-registry tests dropped by the previous goal change (filter_commands ranking/description, build_registry builtins/skills, resolve cases) alongside the new goal tests. - Add coverage for the IM-channel _handle_goal_command, the TUI _handle_goal handler, parse_goal_command, and goalReconciliationKey. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix goal review feedback * fix goal continuation checkpoint races * prioritize goal commands while streaming Route composer submits through a shared helper so /goal commands can be handled before the streaming stop shortcut, while ordinary streaming submits still stop the active run. Testing: cd frontend && pnpm exec rstest run tests/unit/components/workspace/input-box-helpers.test.ts tests/unit/components/workspace/goal-status-helpers.test.ts; cd frontend && pnpm check * preserve goal status during clarification Keep omitted stream goal fields distinct from explicit null clears so clarification interrupts do not hide an active thread goal that is still present in the checkpoint. Testing: pnpm exec rstest run tests/unit/components/workspace/use-active-goal.test.ts tests/unit/components/workspace/input-box-helpers.test.ts tests/unit/components/workspace/goal-status-helpers.test.ts; pnpm check; git diff --check * style: format active goal hook Run Prettier on use-active-goal.ts to satisfy the frontend lint workflow formatting gate. Testing: pnpm format; pnpm exec rstest run tests/unit/components/workspace/use-active-goal.test.ts tests/unit/components/workspace/input-box-helpers.test.ts tests/unit/components/workspace/goal-status-helpers.test.ts; pnpm check; git diff --check * fix goal review followups --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> |
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Syed Osama Ali Shah
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d9305989f3
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fix: don't flag outline as truncated at exactly MAX_OUTLINE_ENTRIES headings (#3856)
extract_outline appended the {truncated: True} sentinel as soon as len(outline) >= MAX_OUTLINE_ENTRIES, i.e. right after the 50th heading, before knowing whether a 51st exists. A document with exactly 50 headings was therefore reported as truncated, and uploads_middleware injected a misleading 'showing first 50 headings' hint into the agent's context. Use a lookahead: only mark truncated once a heading beyond the limit is actually seen, then drop that extra entry. Adds an exact-boundary regression test.
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Eilen Shin
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cc1df2d038
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refactor: share one message->text helper for journal + thread messages (#3747)
Part of #3742. RunJournal._message_text and the gateway thread-messages helper (thread_runs._message_text) reimplemented the same 'extract display text from a message' logic — str / list of string|{text}|nested{content} blocks joined without a separator / mapping with text|content key. They differed only in two ways: journal reads a BaseMessage attribute while thread_runs reads dict-shaped run_events rows, and journal falls back to message.text. Add deerflow.utils.messages.message_to_text(message, *, text_attribute_fallback=False) that handles both message shapes (attribute or mapping content access) and gates the .text fallback behind a flag, and have both call sites delegate. journal passes text_attribute_fallback=True; thread_runs uses the default. Behavior is unchanged at both sites. Verified behavior-preserving with an equivalence harness running both original implementations vs the shared helper over 98 inputs (BaseMessage and dict messages; str/list/mapping/None/numeric content; mixed blocks; .text attribute present/absent/non-str) -> 0 mismatches. Added tests/test_utils_messages.py; the journal last_ai_message extraction tests still pass. |
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DanielWalnut
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16391e35ab
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fix(skills): harden slash skill activation across chat channels (#3466)
* support slash skill activation * format slash skill activation * Preserve slash skill activation with uploads * Address slash skill review feedback * Address slash skill follow-up review * Fix lazy slash skill storage resolution * Keep slash skill activation out of system prompt * Address slash skill review issues * fix: harden slash skill command handling * feat(frontend): add slash skill autocomplete * fix: address slash skill review feedback * fix: preserve slash skill text for IM uploads |
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Xinmin Zeng
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ca3332f8bf
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fix(gateway): return ISO 8601 timestamps from threads endpoints (#2599)
* fix(gateway): return ISO 8601 timestamps from threads endpoints (#2594) ThreadResponse documents created_at / updated_at as ISO timestamps, matching the LangGraph Platform schema (langgraph_sdk.schema.Thread exposes them as datetime, JSON-encoded as ISO 8601). The gateway threads router was instead emitting str(time.time()) — unix-second floats — breaking frontend new Date() parsing and producing a mixed ISO/unix wire format that also corrupted the search sort order. Centralize timestamp generation in deerflow.utils.time: - now_iso() — datetime.now(UTC).isoformat() - coerce_iso(x) — heals legacy unix-timestamp strings on read so the store converges to ISO without a one-shot migration threads.py: replace 6 time.time() call sites with now_iso(); wrap all read paths and Phase-2 checkpoint metadata with coerce_iso(); _store_upsert opportunistically heals legacy created_at on update; drop unused time import. thread_runs.py: reuse now_iso() instead of a private duplicate _now_iso(), preventing future drift between the two timestamp call sites. Tests: 9 unit tests for the helper; 5 integration tests pinning the ISO contract for create/get/patch/search and the legacy-healing path on the internal store upsert. Full suite: 2144 passed, 15 skipped, 0 failed. Closes #2594 * fix(gateway): coerce checkpoint metadata timestamps to ISO on read After the merge with main, three additional read paths in ``threads.py`` were still emitting raw ``str(metadata.get("created_at", ""))`` — ``get_thread_state``, ``update_thread_state``, and ``get_thread_history``. Same root cause as #2594: when the checkpoint metadata's ``created_at`` is a unix-second float (legacy data, or a checkpoint written by an older Gateway version), ``str(float)`` produces ``"1777252410.411327"`` and the frontend's ``new Date(...)`` returns ``Invalid Date``. The fix on the ``/threads/{id}`` GET path was already in place; these three sibling endpoints needed the same treatment. All four call sites now flow through ``coerce_iso``, so: - legacy float metadata heals to ISO on the way out, - ISO metadata passes through unchanged, - ``datetime`` instances (which the new ``coerce_iso`` branch handles explicitly) emit with the ``T`` separator instead of falling through to the space-separated ``str(datetime)`` form. Coverage added for the two endpoints not already pinned by the merge: - ``test_get_thread_state_returns_iso_for_legacy_checkpoint_metadata`` - ``test_get_thread_history_returns_iso_for_legacy_checkpoint_metadata`` Both pre-seed a checkpoint whose metadata carries the literal float from the issue body and assert the wire format is ISO. |
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Hinotobi
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80e210f5bb
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[security] fix(uploads): require explicit opt-in for host-side document conversion (#2332)
* fix: disable host-side upload conversion by default * fix: address PR review comments on upload conversion gate |
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SHIYAO ZHANG
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163121d327
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fix(uploads): handle split-bold headings and ** ** artefacts in extract_outline (#1838)
* feat(uploads): guide agent to use grep/glob/read_file for uploaded documents Add workflow guidance to the <uploaded_files> context block so the agent knows to use grep and glob (added in #1784) alongside read_file when working with uploaded documents, rather than falling back to web search. This is the final piece of the three-PR PDF agentic search pipeline: - PR1 (#1727): pymupdf4llm converter produces structured Markdown with headings - PR2 (#1738): document outline injected into agent context with line numbers - PR3 (this): agent guided to use outline + grep + read_file workflow * feat(uploads): add file-first priority and fallback guidance to uploaded_files context * fix(uploads): handle split-bold headings and ** ** artefacts in extract_outline - Add _clean_bold_title() to merge adjacent bold spans (** **) produced by pymupdf4llm when bold text crosses span boundaries - Add _SPLIT_BOLD_HEADING_RE (Style 3) to recognise **<num>** **<title>** headings common in academic papers; excludes pure-number table headers and rows with more than 4 bold blocks - When outline is empty, read first 5 non-empty lines of the .md as a content preview and surface a grep hint in the agent context - Update _format_file_entry to render the preview + grep hint instead of silently omitting the outline section - Add 3 new extract_outline tests and 2 new middleware tests (65 total) * fix(uploads): address Copilot review comments on extract_outline regex - Replace ASCII [A-Za-z] guard with negative lookahead to support non-ASCII titles (e.g. **1** **概述**); pure-numeric/punctuation blocks still excluded - Replace .+ with [^*]+ and cap repetition at {0,2} (four blocks total) to keep _SPLIT_BOLD_HEADING_RE linear and avoid ReDoS on malformed input - Remove now-redundant len(blocks) <= 4 code-level check (enforced by regex) - Log debug message with exc_info when preview extraction fails |
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SHIYAO ZHANG
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ddfc988bef
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feat(uploads): add pymupdf4llm PDF converter with auto-fallback and async offload (#1727)
* feat(uploads): add pymupdf4llm PDF converter with auto-fallback and async offload - Introduce pymupdf4llm as an optional PDF converter with better heading detection and table preservation than MarkItDown - Auto mode: prefer pymupdf4llm when installed; fall back to MarkItDown when output is suspiciously sparse (image-based / scanned PDFs) - Sparsity check uses chars-per-page (< 50 chars/page) rather than an absolute threshold, correctly handling both short and long documents - Large files (> 1 MB) are offloaded to asyncio.to_thread() to avoid blocking the event loop (related: #1569) - Add UploadsConfig with pdf_converter field (auto/pymupdf4llm/markitdown) - Add pymupdf4llm as optional dependency: pip install deerflow-harness[pymupdf] - Add 14 unit tests covering sparsity heuristic, routing logic, and async path * fix(uploads): address Copilot review comments on PDF converter - Fix docstring: MIN_CHARS_PYMUPDF -> _MIN_CHARS_PER_PAGE (typo) - Fix file handle leak: wrap pymupdf.open in try/finally to ensure doc.close() - Fix silent fallback gap: _convert_pdf_with_pymupdf4llm now catches all conversion exceptions (not just ImportError), so encrypted/corrupt PDFs fall back to MarkItDown instead of propagating - Tighten type: pdf_converter field changed from str to Literal[auto|pymupdf4llm|markitdown] - Normalize config value: _get_pdf_converter() strips and lowercases the raw config string, warns and falls back to 'auto' on unknown values |
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SHIYAO ZHANG
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5ff230eafd
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feat(uploads): inject document outline into agent context for converted files (#1738)
* feat(uploads): inject document outline into agent context for converted files
Extract headings from converted .md files and inject them into the
<uploaded_files> context block so the agent can navigate large documents
by line number before reading.
- Add `extract_outline()` to `file_conversion.py`: recognises standard
Markdown headings (#/##/###) and SEC-style bold structural headings
(**ITEM N. BUSINESS**, **PART II**); caps at 50 entries; excludes
cover-page boilerplate (WASHINGTON DC, CURRENT REPORT, SIGNATURES)
- Add `_extract_outline_for_file()` helper in `uploads_middleware.py`:
looks for a sibling `.md` file produced by the conversion pipeline
- Update `UploadsMiddleware._create_files_message()` to render the outline
under each file entry with `L{line}: {title}` format and a `read_file`
prompt for range-based reading
- Tests: 10 new tests for `extract_outline()`, 4 new tests for outline
injection in `UploadsMiddleware`; existing test updated for new `outline`
field in `uploaded_files` state
Partially addresses #1647 (agent ignores uploaded files).
* fix(uploads): stream outline file reads and strip inline bold from heading titles
- Switch extract_outline() from read_text().splitlines() to open()+line iteration
so large converted documents are not loaded into memory on every agent turn;
exits as soon as MAX_OUTLINE_ENTRIES is reached (Copilot suggestion)
- Strip **...** wrapper from standard Markdown heading titles before appending
to outline so agent context stays clean (e.g. "## **Overview**" → "Overview")
(Copilot suggestion)
- Remove unused pathlib.Path import and fix import sort order in test_file_conversion.py
to satisfy ruff CI lint
* fix(uploads): show truncation hint when outline exceeds MAX_OUTLINE_ENTRIES
When extract_outline() hits the cap it now appends a sentinel entry
{"truncated": True} instead of silently dropping the rest of the headings.
UploadsMiddleware reads the sentinel and renders a hint line:
... (showing first 50 headings; use `read_file` to explore further)
Without this the agent had no way to know the outline was incomplete and
would treat the first 50 headings as the full document structure.
* fix(uploads): fall back to configurable.thread_id when runtime.context lacks thread_id
runtime.context does not always carry thread_id (depends on LangGraph
invocation path). ThreadDataMiddleware already falls back to
get_config().configurable.thread_id — apply the same pattern so
UploadsMiddleware can resolve the uploads directory and attach outlines
in all invocation paths.
* style: apply ruff format
---------
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
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DanielWalnut
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76803b826f
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refactor: split backend into harness (deerflow.*) and app (app.*) (#1131)
* refactor: extract shared utils to break harness→app cross-layer imports Move _validate_skill_frontmatter to src/skills/validation.py and CONVERTIBLE_EXTENSIONS + convert_file_to_markdown to src/utils/file_conversion.py. This eliminates the two reverse dependencies from client.py (harness layer) into gateway/routers/ (app layer), preparing for the harness/app package split. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * refactor: split backend/src into harness (deerflow.*) and app (app.*) Physically split the monolithic backend/src/ package into two layers: - **Harness** (`packages/harness/deerflow/`): publishable agent framework package with import prefix `deerflow.*`. Contains agents, sandbox, tools, models, MCP, skills, config, and all core infrastructure. - **App** (`app/`): unpublished application code with import prefix `app.*`. Contains gateway (FastAPI REST API) and channels (IM integrations). Key changes: - Move 13 harness modules to packages/harness/deerflow/ via git mv - Move gateway + channels to app/ via git mv - Rename all imports: src.* → deerflow.* (harness) / app.* (app layer) - Set up uv workspace with deerflow-harness as workspace member - Update langgraph.json, config.example.yaml, all scripts, Docker files - Add build-system (hatchling) to harness pyproject.toml - Add PYTHONPATH=. to gateway startup commands for app.* resolution - Update ruff.toml with known-first-party for import sorting - Update all documentation to reflect new directory structure Boundary rule enforced: harness code never imports from app. All 429 tests pass. Lint clean. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * chore: add harness→app boundary check test and update docs Add test_harness_boundary.py that scans all Python files in packages/harness/deerflow/ and fails if any `from app.*` or `import app.*` statement is found. This enforces the architectural rule that the harness layer never depends on the app layer. Update CLAUDE.md to document the harness/app split architecture, import conventions, and the boundary enforcement test. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * feat: add config versioning with auto-upgrade on startup When config.example.yaml schema changes, developers' local config.yaml files can silently become outdated. This adds a config_version field and auto-upgrade mechanism so breaking changes (like src.* → deerflow.* renames) are applied automatically before services start. - Add config_version: 1 to config.example.yaml - Add startup version check warning in AppConfig.from_file() - Add scripts/config-upgrade.sh with migration registry for value replacements - Add `make config-upgrade` target - Auto-run config-upgrade in serve.sh and start-daemon.sh before starting services - Add config error hints in service failure messages Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * fix comments * fix: update src.* import in test_sandbox_tools_security to deerflow.* Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * fix: handle empty config and search parent dirs for config.example.yaml Address Copilot review comments on PR #1131: - Guard against yaml.safe_load() returning None for empty config files - Search parent directories for config.example.yaml instead of only looking next to config.yaml, fixing detection in common setups Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * fix: correct skills root path depth and config_version type coercion - loader.py: fix get_skills_root_path() to use 5 parent levels (was 3) after harness split, file lives at packages/harness/deerflow/skills/ so parent×3 resolved to backend/packages/harness/ instead of backend/ - app_config.py: coerce config_version to int() before comparison in _check_config_version() to prevent TypeError when YAML stores value as string (e.g. config_version: "1") - tests: add regression tests for both fixes Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> * fix: update test imports from src.* to deerflow.*/app.* after harness refactor Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com> |