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10 Commits
| Author | SHA1 | Message | Date | |
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georgelichen
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24001e80b7
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fix(skills): safely tokenize portable allowed-tools patterns (#4984)
* fix(skills): accept portable frontmatter forms * fix(skills): normalize portable tool names * Safely preserve parenthesized portable skill tool patterns Portable Agent Skills declarations such as Bash(tvly *) contain spaces inside a command pattern. Keep those patterns as single literal entries while preserving exact names from the existing YAML-list form, so skill loading no longer fragments valid metadata or rewrites mixed-case MCP tools. Constraint: DeerFlow's current skill policy matches exact tool names and does not inspect Bash arguments Constraint: Agent Skills scalar syntax uses whitespace-separated entries with parenthesized command patterns Rejected: raw.split() | fragments Bash(tvly *) into unrelated tool names Rejected: normalize YAML-list entries | breaks case-sensitive MCP/runtime tool names Rejected: map Bash(...) to bash | broadens command-scoped declarations into unrestricted shell access Confidence: high Scope-risk: narrow Reversibility: clean Directive: Keep Bash(...) entries literal and inactive until DeerFlow has an explicit command-pattern authorization model Tested: 175 focused parser, validation, installer, review, loader, and tool-policy tests; Ruff check and format; compileall; git diff --check Not-tested: Full backend suite stopped at pre-existing Windows mode assertion test_runtime_config_store_file_is_owner_only Related: #4912 * Preserve exact custom tool names in portable skill parsing Portable scalar frontmatter needs alias normalization for known DeerFlow-compatible names, but generic case conversion corrupts MCP and custom tool identifiers. The tokenizer also treated quoted or escaped parentheses as structural delimiters, rejecting valid command patterns. Preserve unknown names and parse quoted or escaped patterns without broadening Bash(...) into bash. Constraint: Runtime skill policy uses exact tool-name matching Constraint: Parenthesized patterns remain literal because argument-level authorization is not implemented Rejected: Generic CamelCase-to-snake_case for every scalar | rewrites custom/MCP names Rejected: Map Bash(...) to bash | broadens command-scoped declarations into unrestricted shell access Confidence: high Scope-risk: narrow Reversibility: clean Directive: Add an explicit alias before supporting another portable tool name; keep command-pattern authorization separate Tested: 225 skills tests passed, 1 skipped; Ruff check; Ruff format --check; compileall; git diff --check Not-tested: Full backend suite remains affected by unrelated Windows permissions/path and missing Lark CLI tests Related: #4984; #4912 * Preserve case-sensitive exact tool authorities Case-folding a scalar declaration before alias lookup can turn literal write into write_file, substituting a different runtime authority. Keep exact portable spellings as aliases and preserve lowercase, custom, and MCP names; strengthen activation coverage for spaced Bash patterns and command fragments. Constraint: Runtime skill policy uses exact tool-name matching Constraint: Bash(...) remains literal and inactive because command-pattern authorization is not implemented Rejected: Case-insensitive alias lookup | maps lowercase runtime tools onto built-in authorities Rejected: Broaden the parser into command-pattern authorization | outside this PR's scope Confidence: high Scope-risk: narrow Reversibility: clean Directive: Add aliases only for documented portable spellings; preserve all other scalar names verbatim Tested: 226 skills tests passed, 1 skipped; Ruff check; Ruff format --check; compileall; git diff --check Not-tested: Full backend suite remains affected by unrelated Windows permissions/path and missing Lark CLI tests; GitNexus index refresh remains stale Related: #4984; #5016297602 * Support portable Glob and Grep skill aliases Portable Agent Skills commonly declare Glob and Grep, but DeerFlow exposes the runtime tools as glob and grep. Add explicit exact-spelling aliases and activation coverage so imported skills retain search-tool access without broad normalization. Constraint: Runtime skill policy uses exact tool-name matching Constraint: Alias conversion is limited to documented portable spellings Rejected: Case-fold all scalar names | can substitute custom or MCP authorities Rejected: Map arbitrary names by convention | breaks exact runtime compatibility Confidence: high Scope-risk: narrow Reversibility: clean Directive: Keep the alias table explicit and preserve unknown scalar names verbatim Tested: 228 skills tests passed, 1 skipped; Ruff check; Ruff format --check; compileall; git diff --check Not-tested: Full backend suite has unrelated environment failures on Windows; GitNexus index reports stale line mappings Related: #4984; #5026257899 --------- Co-authored-by: kriptoburak <kriptoburak@users.noreply.github.com> |
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georgelichen
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641a4147e7
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fix(skills): parse Responses API content blocks in moderation scanner (#4936)
* Fix skill moderation parsing for Responses API content blocks Normalize LangChain Responses API text blocks before parsing the security moderation decision, while preserving the existing fail-closed behavior for unavailable or invalid moderation results. Add regression coverage for mixed content blocks and document the compatibility boundary. Constraint: Responses API AIMessage content is list-shaped while Chat Completions content is string-shaped Rejected: Disable security scanning | would weaken the skill write safety boundary Confidence: high Scope-risk: narrow Reversibility: clean Directive: Keep moderation parsing provider-format tolerant without including reasoning or tool blocks in the decision payload Tested: 27 security scanner tests; ruff check; ruff format check Not-tested: Live moderation request against the configured external endpoint * Reuse shared LLM response text normalization Route skill moderation responses through the existing provider-format normalizer so only text and output_text blocks participate in JSON parsing. Strengthen regression coverage with reasoning and tool blocks that contain misleading text fields.\n\nConstraint: Responses API content is shared across multiple harness consumers\nRejected: Keep a private normalizer | duplicated provider-shape policy diverges and can reintroduce reasoning-block contamination\nConfidence: high\nScope-risk: narrow\nReversibility: clean\nDirective: Extend the shared normalizer when a new provider content shape is verified; do not add divergent local parsers\nTested: 118 related backend tests; regression test red against the previous parser; Ruff check and format check\nNot-tested: Live GitHub CLA status refresh * Restore trusted external skill package loading Skill discovery follows one-level package-directory symlinks, but activation path validation rejected the resolved external path. Restore that compatibility for configured custom-skill category roots while keeping file-level symlinks and deeper escapes blocked. Add regression coverage for local and user-scoped storage plus slash activation, and document the boundary. Constraint: Existing skill discovery follows directory symlinks and operator-managed external packages must remain loadable Rejected: Allow arbitrary resolved paths | would weaken the skill path trust boundary Confidence: high Scope-risk: moderate Directive: Keep the final SKILL.md file symlink-free and preserve one-level category-root validation Tested: 79 targeted skill storage, loader, slash activation, and user-scoped tests passed; Ruff check and format check passed; GitNexus staged change detection reported low risk Not-tested: Real symlink activation on this Windows host lacks SeCreateSymbolicLinkPrivilege and is skipped Related: Skill projection copies sources into sandbox-visible views * Exercise real filesystem symlink boundaries in skill storage tests Replace global Path.resolve/is_symlink mocks with real directory and file symlinks, preserving the Windows privilege skip. Add regression coverage for deeper custom-root escapes and symlinks under non-custom categories so the one-level allowance remains explicit. Constraint: Symlink creation requires SeCreateSymbolicLinkPrivilege on some Windows runners Rejected: Keep global path-method mocks | they validate the mock behavior rather than filesystem semantics Confidence: high Scope-risk: narrow Reversibility: clean Directive: Keep security-boundary tests on real filesystem primitives; skip only when the runner lacks symlink privilege Tested: 76 targeted loader/storage/slash tests; Ruff check; Ruff format check Not-tested: Windows symlink-enabled execution on this host Related: #4936 * Pin the actual nested symlink escape boundary Place the second symlink below a real custom package directory so the test reaches the one-level relative-parent guard instead of returning early on a non-symlink parent. Keep the public-category rejection coverage unchanged. Constraint: The security boundary depends on both symlink depth and category root Rejected: Link the outer package directory directly | the parent is not a symlink at validation time, so the depth guard is never evaluated Confidence: high Scope-risk: narrow Reversibility: clean Directive: Keep this regression tied to the exact relative_parent.parts depth check Tested: Targeted storage, loader, and slash suites; GitNexus staged detection Not-tested: Symlink-enabled execution on this Windows host Related: #4936 * Make the nested symlink regression reach the depth guard The test now validates the SKILL.md directly through the nested symlink, so the symlink is the immediate parent and the relative-parent depth check is executed. Constraint: Windows test execution may skip when symlink privilege is unavailable Rejected: Keep the extra nested path segment | it bypasses the symlink-depth guard through an early return Confidence: high Scope-risk: narrow Reversibility: clean Directive: Mutation tests must fail when the depth restriction is removed Tested: Targeted test (skipped on this Windows host without symlink privilege); Ruff check and format check Not-tested: Real symlink execution on Windows; Linux CI will exercise the case Related: #4936 * Keep sandbox projections fresh for linked external skill packages The storage layer intentionally accepts one-level custom package-directory symlinks, but projection freshness previously hashed only the link inode. Follow the permitted target tree during custom and legacy source-signature scans so edits to SKILL.md, scripts, references, or assets trigger a rebuild before sandbox use. Constraint: Preserve the existing one-level custom/legacy symlink boundary and do not follow public, integration, nested, or file symlinks Rejected: Invalidate projections only from /api/skills/reload | sandbox acquisition must also detect edits made directly in external targets Confidence: high Scope-risk: narrow Reversibility: clean Directive: Keep target-tree traversal limited to the storage paths that explicitly permit external package-directory links Tested: 77 projection, user-scoped storage, and lifecycle tests passed; Ruff check and format check passed; git diff --check passed; GitNexus staged detection reported low risk Not-tested: Real external symlink execution on this Windows host without SeCreateSymbolicLinkPrivilege; existing tests skip that platform limitation |
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Huixin615
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65afc9b1d2
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fix(skills): apply allowed-tools only to active skills (#4098)
* fix(skills): scope allowed-tools to active skills * fix(skills): tolerate stale active skill paths * chore: retrigger CI * fix(skills): document policy activation limits * perf(skills): reuse per-step tool policy decisions * fix(skills): harden runtime tool policy contracts * fix(skills): redact cached policy decisions * fix(skills): make slash tool policy authoritative * fix(skills): preserve policy-safe discovery tools * test(skills): cover explicit task delegation policy |
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Nan Gao
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f80ac961ec
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fix(harness): restore legacy skills path fallback (#2694) (#2696)
* fix(harness): restore legacy skills path fallback (#2694) * fix(format): make format * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> |
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Nan Gao
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c09c334544
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fix(harness): resolve runtime paths from project root (#2642)
* fix(harness): resolve runtime paths from project root * docs(config): update * fix(config): address runtime path review feedback * test(config): fix skills path e2e root * test(config): cover legacy config fallback when project root lacks config files Verifies that when DEER_FLOW_PROJECT_ROOT is unset and cwd has no config.yaml/extensions_config.json, AppConfig and ExtensionsConfig fall back to the legacy backend/repo-root candidates — the backward-compat path requested in PR #2642 review. --------- Co-authored-by: Willem Jiang <willem.jiang@gmail.com> |
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Xun
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1ad1420e31
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refactor(skills): Unified skill storage capability (#2613) | ||
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DanielWalnut
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888f7bfb9d
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Implement skill self-evolution and skill_manage flow (#1874)
* chore: ignore .worktrees directory * Add skill_manage self-evolution flow * Fix CI regressions for skill_manage * Address PR review feedback for skill evolution * fix(skill-evolution): preserve history on delete * fix(skill-evolution): tighten scanner fallbacks * docs: add skill_manage e2e evidence screenshot * fix(skill-manage): avoid blocking fs ops in session runtime --------- Co-authored-by: Willem Jiang <willem.jiang@gmail.com> |
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DanielWalnut
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d119214fee
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feat(harness): integration ACP agent tool (#1344)
* refactor: extract shared utils to break harness→app cross-layer imports Move _validate_skill_frontmatter to src/skills/validation.py and CONVERTIBLE_EXTENSIONS + convert_file_to_markdown to src/utils/file_conversion.py. This eliminates the two reverse dependencies from client.py (harness layer) into gateway/routers/ (app layer), preparing for the harness/app package split. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * refactor: split backend/src into harness (deerflow.*) and app (app.*) Physically split the monolithic backend/src/ package into two layers: - **Harness** (`packages/harness/deerflow/`): publishable agent framework package with import prefix `deerflow.*`. Contains agents, sandbox, tools, models, MCP, skills, config, and all core infrastructure. - **App** (`app/`): unpublished application code with import prefix `app.*`. Contains gateway (FastAPI REST API) and channels (IM integrations). Key changes: - Move 13 harness modules to packages/harness/deerflow/ via git mv - Move gateway + channels to app/ via git mv - Rename all imports: src.* → deerflow.* (harness) / app.* (app layer) - Set up uv workspace with deerflow-harness as workspace member - Update langgraph.json, config.example.yaml, all scripts, Docker files - Add build-system (hatchling) to harness pyproject.toml - Add PYTHONPATH=. to gateway startup commands for app.* resolution - Update ruff.toml with known-first-party for import sorting - Update all documentation to reflect new directory structure Boundary rule enforced: harness code never imports from app. All 429 tests pass. Lint clean. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * chore: add harness→app boundary check test and update docs Add test_harness_boundary.py that scans all Python files in packages/harness/deerflow/ and fails if any `from app.*` or `import app.*` statement is found. This enforces the architectural rule that the harness layer never depends on the app layer. Update CLAUDE.md to document the harness/app split architecture, import conventions, and the boundary enforcement test. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * feat: add config versioning with auto-upgrade on startup When config.example.yaml schema changes, developers' local config.yaml files can silently become outdated. This adds a config_version field and auto-upgrade mechanism so breaking changes (like src.* → deerflow.* renames) are applied automatically before services start. - Add config_version: 1 to config.example.yaml - Add startup version check warning in AppConfig.from_file() - Add scripts/config-upgrade.sh with migration registry for value replacements - Add `make config-upgrade` target - Auto-run config-upgrade in serve.sh and start-daemon.sh before starting services - Add config error hints in service failure messages Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * fix comments * fix: update src.* import in test_sandbox_tools_security to deerflow.* Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * fix: handle empty config and search parent dirs for config.example.yaml Address Copilot review comments on PR #1131: - Guard against yaml.safe_load() returning None for empty config files - Search parent directories for config.example.yaml instead of only looking next to config.yaml, fixing detection in common setups Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * fix: correct skills root path depth and config_version type coercion - loader.py: fix get_skills_root_path() to use 5 parent levels (was 3) after harness split, file lives at packages/harness/deerflow/skills/ so parent×3 resolved to backend/packages/harness/ instead of backend/ - app_config.py: coerce config_version to int() before comparison in _check_config_version() to prevent TypeError when YAML stores value as string (e.g. config_version: "1") - tests: add regression tests for both fixes Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> * fix: update test imports from src.* to deerflow.*/app.* after harness refactor Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> * feat(harness): add tool-first ACP agent invocation (#37) * feat(harness): add tool-first ACP agent invocation * build(harness): make ACP dependency required * fix(harness): address ACP review feedback * feat(harness): decouple ACP agent workspace from thread data ACP agents (codex, claude-code) previously used per-thread workspace directories, causing path resolution complexity and coupling task execution to DeerFlow's internal thread data layout. This change: - Replace _resolve_cwd() with a fixed _get_work_dir() that always uses {base_dir}/acp-workspace/, eliminating virtual path translation and thread_id lookups - Introduce /mnt/acp-workspace virtual path for lead agent read-only access to ACP agent output files (same pattern as /mnt/skills) - Add security guards: read-only validation, path traversal prevention, command path allowlisting, and output masking for acp-workspace - Update system prompt and tool description to guide LLM: send self-contained tasks to ACP agents, copy results via /mnt/acp-workspace - Add 11 new security tests for ACP workspace path handling Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * refactor(prompt): inject ACP section only when ACP agents are configured The ACP agent guidance in the system prompt is now conditionally built by _build_acp_section(), which checks get_acp_agents() and returns an empty string when no ACP agents are configured. This avoids polluting the prompt with irrelevant instructions for users who don't use ACP. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * fix lint * fix(harness): address Copilot review comments on sandbox path handling and ACP tool - local_sandbox: fix path-segment boundary bug in _resolve_path (== or startswith +"/") and add lookahead in _resolve_paths_in_command regex to prevent /mnt/skills matching inside /mnt/skills-extra - local_sandbox_provider: replace print() with logger.warning(..., exc_info=True) - invoke_acp_agent_tool: guard getattr(option, "optionId") with None default + continue; move full prompt from INFO to DEBUG level (truncated to 200 chars) - sandbox/tools: fix _get_acp_workspace_host_path docstring to match implementation; remove misleading "read-only" language from validate_local_bash_command_paths Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> * fix(acp): thread-isolated workspaces, permission guardrail, and ContextVar registry P1.1 – ACP workspace thread isolation - Add `Paths.acp_workspace_dir(thread_id)` for per-thread paths - `_get_work_dir(thread_id)` in invoke_acp_agent_tool now uses `{base_dir}/threads/{thread_id}/acp-workspace/`; falls back to global workspace when thread_id is absent or invalid - `_invoke` extracts thread_id from `RunnableConfig` via `Annotated[RunnableConfig, InjectedToolArg]` - `sandbox/tools.py`: `_get_acp_workspace_host_path(thread_id)`, `_resolve_acp_workspace_path(path, thread_id)`, and all callers (`replace_virtual_paths_in_command`, `mask_local_paths_in_output`, `ls_tool`, `read_file_tool`) now resolve ACP paths per-thread P1.2 – ACP permission guardrail - New `auto_approve_permissions: bool = False` field in `ACPAgentConfig` - `_build_permission_response(options, *, auto_approve: bool)` now defaults to deny; only approves when `auto_approve=True` - Document field in `config.example.yaml` P2 – Deferred tool registry race condition - Replace module-level `_registry` global with `contextvars.ContextVar` - Each asyncio request context gets its own registry; worker threads inherit the context automatically via `loop.run_in_executor` - Expose `get_deferred_registry` / `set_deferred_registry` / `reset_deferred_registry` helpers Tests: 831 pass (57 for affected modules, 3 new tests) Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> * fix(sandbox): mount /mnt/acp-workspace in docker sandbox container The AioSandboxProvider was not mounting the ACP workspace into the sandbox container, so /mnt/acp-workspace was inaccessible when the lead agent tried to read ACP results in docker mode. Changes: - `ensure_thread_dirs`: also create `acp-workspace/` (chmod 0o777) so the directory exists before the sandbox container starts — required for Docker volume mounts - `_get_thread_mounts`: add read-only `/mnt/acp-workspace` mount using the per-thread host path (`host_paths.acp_workspace_dir(thread_id)`) - Update stale CLAUDE.md description (was "fixed global workspace") Tests: `test_aio_sandbox_provider.py` (4 new tests) Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> * fix(lint): remove unused imports in test_aio_sandbox_provider Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * fix config --------- Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com> |
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DanielWalnut
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76803b826f
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refactor: split backend into harness (deerflow.*) and app (app.*) (#1131)
* refactor: extract shared utils to break harness→app cross-layer imports Move _validate_skill_frontmatter to src/skills/validation.py and CONVERTIBLE_EXTENSIONS + convert_file_to_markdown to src/utils/file_conversion.py. This eliminates the two reverse dependencies from client.py (harness layer) into gateway/routers/ (app layer), preparing for the harness/app package split. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * refactor: split backend/src into harness (deerflow.*) and app (app.*) Physically split the monolithic backend/src/ package into two layers: - **Harness** (`packages/harness/deerflow/`): publishable agent framework package with import prefix `deerflow.*`. Contains agents, sandbox, tools, models, MCP, skills, config, and all core infrastructure. - **App** (`app/`): unpublished application code with import prefix `app.*`. Contains gateway (FastAPI REST API) and channels (IM integrations). Key changes: - Move 13 harness modules to packages/harness/deerflow/ via git mv - Move gateway + channels to app/ via git mv - Rename all imports: src.* → deerflow.* (harness) / app.* (app layer) - Set up uv workspace with deerflow-harness as workspace member - Update langgraph.json, config.example.yaml, all scripts, Docker files - Add build-system (hatchling) to harness pyproject.toml - Add PYTHONPATH=. to gateway startup commands for app.* resolution - Update ruff.toml with known-first-party for import sorting - Update all documentation to reflect new directory structure Boundary rule enforced: harness code never imports from app. All 429 tests pass. Lint clean. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * chore: add harness→app boundary check test and update docs Add test_harness_boundary.py that scans all Python files in packages/harness/deerflow/ and fails if any `from app.*` or `import app.*` statement is found. This enforces the architectural rule that the harness layer never depends on the app layer. Update CLAUDE.md to document the harness/app split architecture, import conventions, and the boundary enforcement test. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * feat: add config versioning with auto-upgrade on startup When config.example.yaml schema changes, developers' local config.yaml files can silently become outdated. This adds a config_version field and auto-upgrade mechanism so breaking changes (like src.* → deerflow.* renames) are applied automatically before services start. - Add config_version: 1 to config.example.yaml - Add startup version check warning in AppConfig.from_file() - Add scripts/config-upgrade.sh with migration registry for value replacements - Add `make config-upgrade` target - Auto-run config-upgrade in serve.sh and start-daemon.sh before starting services - Add config error hints in service failure messages Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * fix comments * fix: update src.* import in test_sandbox_tools_security to deerflow.* Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * fix: handle empty config and search parent dirs for config.example.yaml Address Copilot review comments on PR #1131: - Guard against yaml.safe_load() returning None for empty config files - Search parent directories for config.example.yaml instead of only looking next to config.yaml, fixing detection in common setups Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * fix: correct skills root path depth and config_version type coercion - loader.py: fix get_skills_root_path() to use 5 parent levels (was 3) after harness split, file lives at packages/harness/deerflow/skills/ so parent×3 resolved to backend/packages/harness/ instead of backend/ - app_config.py: coerce config_version to int() before comparison in _check_config_version() to prevent TypeError when YAML stores value as string (e.g. config_version: "1") - tests: add regression tests for both fixes Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> * fix: update test imports from src.* to deerflow.*/app.* after harness refactor Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com> |
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Xinmin Zeng
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7754c49217
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feat(skills): support recursive nested skill loading (#950)
* feat(skills): support recursive nested skill loading * Apply suggestions from code review Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com> --------- Co-authored-by: Willem Jiang <willem.jiang@gmail.com> Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com> |